-
2
-
-
84875609301
-
Spinal: Scalable protein interaction network alignment
-
A.E. Aladag, and C. Erten Spinal: scalable protein interaction network alignment Bioinformatics 29 7 2013 917 924
-
(2013)
Bioinformatics
, vol.29
, Issue.7
, pp. 917-924
-
-
Aladag, A.E.1
Erten, C.2
-
3
-
-
0036013593
-
Statistical mechanics of complex networks
-
R. Albert, and A.L. Barabási Statistical mechanics of complex networks Rev. Mod. Phys. 74 2002 47 97
-
(2002)
Rev. Mod. Phys.
, vol.74
, pp. 47-97
-
-
Albert, R.1
Barabási, A.L.2
-
4
-
-
84907030076
-
Alignment-free protein interaction network comparison
-
W. Ali, T. Rito, G. Reinert, F. Sun, and C.M. Deane Alignment-free protein interaction network comparison Bioinformatics 30 17 2014 i430 i437
-
(2014)
Bioinformatics
, vol.30
, Issue.17
, pp. i430-i437
-
-
Ali, W.1
Rito, T.2
Reinert, G.3
Sun, F.4
Deane, C.M.5
-
5
-
-
11344278195
-
A measure of similarity between graph vertices: Applications to synonym extraction and web searching
-
V. Blondel, A. Gajardo, M. Heymans, P. Senellart, and P.V. Dooren A measure of similarity between graph vertices: applications to synonym extraction and web searching SIAM Rev. 46 2004 647 666
-
(2004)
SIAM Rev.
, vol.46
, pp. 647-666
-
-
Blondel, V.1
Gajardo, A.2
Heymans, M.3
Senellart, P.4
Dooren, P.V.5
-
6
-
-
70349610382
-
-
Ludwig-Maximilians-Universität München, Fakultät für Mathematik, Informatik und Statistik Ph.D. thesis
-
M. Borgwardt Graph Kernels 2007 Ludwig-Maximilians-Universität München, Fakultät für Mathematik, Informatik und Statistik Ph.D. thesis
-
(2007)
Graph Kernels
-
-
Borgwardt, M.1
-
7
-
-
78049413398
-
A formal analysis of cytokine networks in chronic fatigue syndrome
-
G. Broderick, J. Fuite, A. Kreitz, S.D. Vernon, N. Klimas, and M.A. Fletcher A formal analysis of cytokine networks in chronic fatigue syndrome Brain Behav. Immun. 24 7 2010 1209 1217
-
(2010)
Brain Behav. Immun.
, vol.24
, Issue.7
, pp. 1209-1217
-
-
Broderick, G.1
Fuite, J.2
Kreitz, A.3
Vernon, S.D.4
Klimas, N.5
Fletcher, M.A.6
-
8
-
-
34248202971
-
What is the distance between graphs ?
-
H. Bunke What is the distance between graphs ? Bull. EATCS 20 1983 35 39
-
(1983)
Bull. EATCS
, vol.20
, pp. 35-39
-
-
Bunke, H.1
-
9
-
-
0031198630
-
On a relation between graph edit distance and maximum common subgraph
-
H. Bunke On a relation between graph edit distance and maximum common subgraph Pattern Recognit. Lett. 18 9 1997 689 694
-
(1997)
Pattern Recognit. Lett.
, vol.18
, Issue.9
, pp. 689-694
-
-
Bunke, H.1
-
10
-
-
0032024433
-
A graph distance metric based on the maximum common subgraph
-
H. Bunke A graph distance metric based on the maximum common subgraph Pattern Recognit. Lett. 19 3 1998 255 259
-
(1998)
Pattern Recognit. Lett.
, vol.19
, Issue.3
, pp. 255-259
-
-
Bunke, H.1
-
11
-
-
0033188822
-
Error correcting graph matching: On the influence of the underlying cost function
-
H. Bunke Error correcting graph matching: on the influence of the underlying cost function IEEE Trans. Pattern Anal. Mach. Intell. 21 9 1999 911 917
-
(1999)
IEEE Trans. Pattern Anal. Mach. Intell.
, vol.21
, Issue.9
, pp. 911-917
-
-
Bunke, H.1
-
13
-
-
23844449054
-
Graph matching: Theoretical foundations, algorithms, and applications
-
H. Bunke Graph matching: theoretical foundations, algorithms, and applications Proceedings of Vision Interface 2000 2000 82 88
-
(2000)
Proceedings of Vision Interface 2000
, pp. 82-88
-
-
Bunke, H.1
-
15
-
-
49849106755
-
Graph matching. Exact and error-tolerant methods and the automatic learning of edit costs
-
D. Cook, L.B. Holder, Wiley-Interscience
-
H. Bunke, and M. Neuhaus Graph matching. Exact and error-tolerant methods and the automatic learning of edit costs D. Cook, L.B. Holder, Mining Graph Data 2007 Wiley-Interscience 17 32
-
(2007)
Mining Graph Data
, pp. 17-32
-
-
Bunke, H.1
Neuhaus, M.2
-
19
-
-
0040400549
-
Which graphs are distance graphs ?
-
G. Chartrand, W. Goddard, M.A. Henning, L. Lesniak, H.C. Swart, and C.E. Wall Which graphs are distance graphs ? Ars Comb. 29A 1990 225 232
-
(1990)
Ars Comb.
, vol.29 A
, pp. 225-232
-
-
Chartrand, G.1
Goddard, W.2
Henning, M.A.3
Lesniak, L.4
Swart, H.C.5
Wall, C.E.6
-
21
-
-
84906243482
-
A comparison of algorithms for the pairwise alignment of biological networks
-
C. Clark, and J. Kalita A comparison of algorithms for the pairwise alignment of biological networks Bioinformatics 30 16 2014 2351 2359
-
(2014)
Bioinformatics
, vol.30
, Issue.16
, pp. 2351-2359
-
-
Clark, C.1
Kalita, J.2
-
25
-
-
44749091859
-
Information processing in complex networks: Graph entropy and information functionals
-
M. Dehmer Information processing in complex networks: graph entropy and information functionals Appl. Math. Comput. 201 2008 82 94
-
(2008)
Appl. Math. Comput.
, vol.201
, pp. 82-94
-
-
Dehmer, M.1
-
26
-
-
84964322615
-
Mining graph patterns in web-based systems: A conceptual view
-
A. Mehler, S. Sharoff, G. Rehm, M. Santini, Springer Berlin/New York
-
M. Dehmer, and F. Emmert-Streib Mining graph patterns in web-based systems: a conceptual view A. Mehler, S. Sharoff, G. Rehm, M. Santini, Genres on the Web: Computational Models and Empirical Studies 2010 Springer Berlin/New York 237 253
-
(2010)
Genres on the Web: Computational Models and Empirical Studies
, pp. 237-253
-
-
Dehmer, M.1
Emmert-Streib, F.2
-
27
-
-
49849085811
-
A new method of measuring similarity for a special class of directed graphs
-
M. Dehmer, and A. Mehler A new method of measuring similarity for a special class of directed graphs Tatra Mount. Math. Publ. 36 2007 39 59
-
(2007)
Tatra Mount. Math. Publ.
, vol.36
, pp. 39-59
-
-
Dehmer, M.1
Mehler, A.2
-
28
-
-
33750819438
-
A similarity measure for graphs with low computational complexity
-
M. Dehmer, F. Emmert-Streib, and J. Kilian A similarity measure for graphs with low computational complexity Appl. Math. Comput. 182 2006 447 459
-
(2006)
Appl. Math. Comput.
, vol.182
, pp. 447-459
-
-
Dehmer, M.1
Emmert-Streib, F.2
Kilian, J.3
-
29
-
-
49849088951
-
Graph-theoretical characterizations of generalized trees
-
M. Dehmer, A. Mehler, and F. Emmert-Streib Graph-theoretical characterizations of generalized trees Proceedings of the International Conference on Machine Learning: Models, Technologies & Applications (MLMTA'07), Las Vegas/USA, 2007 2007 113 117
-
(2007)
Proceedings of the International Conference on Machine Learning: Models, Technologies & Applications (MLMTA'07), Las Vegas/USA, 2007
, pp. 113-117
-
-
Dehmer, M.1
Mehler, A.2
Emmert-Streib, F.3
-
30
-
-
77949528269
-
A large scale analysis of information-theoretic network complexity measures using chemical structures
-
M. Dehmer, N. Barbarini, K. Varmuza, and A. Graber A large scale analysis of information-theoretic network complexity measures using chemical structures PLoS ONE 4 12 2009 e8057
-
(2009)
PLoS ONE
, vol.4
, Issue.12
, pp. e8057
-
-
Dehmer, M.1
Barbarini, N.2
Varmuza, K.3
Graber, A.4
-
31
-
-
84896716942
-
Large-scale evaluation of molecular descriptors by means of clustering
-
M. Dehmer, F. Emmert-Streib, and S. Tripathi Large-scale evaluation of molecular descriptors by means of clustering PLoS ONE 8 12 2013 e83956
-
(2013)
PLoS ONE
, vol.8
, Issue.12
, pp. e83956
-
-
Dehmer, M.1
Emmert-Streib, F.2
Tripathi, S.3
-
32
-
-
84899705018
-
Interrelations of graph distance measures based on topological indices
-
M. Dehmer, F. Emmert-Streib, and Y. Shi Interrelations of graph distance measures based on topological indices PLoS ONE 9 2014 e94985
-
(2014)
PLoS ONE
, vol.9
, pp. e94985
-
-
Dehmer, M.1
Emmert-Streib, F.2
Shi, Y.3
-
35
-
-
34548747580
-
The chronic fatigue syndrome: A comparative pathway analysis
-
F. Emmert-Streib The chronic fatigue syndrome: a comparative pathway analysis J. Comput. Biol. 14 7 2007 961 972
-
(2007)
J. Comput. Biol.
, vol.14
, Issue.7
, pp. 961-972
-
-
Emmert-Streib, F.1
-
36
-
-
34548747580
-
The chronic fatigue syndrome: A comparative pathway analysis
-
F. Emmert-Streib The chronic fatigue syndrome: a comparative pathway analysis J. Comput. Biol. 14 7 2007
-
(2007)
J. Comput. Biol.
, vol.14
, Issue.7
-
-
Emmert-Streib, F.1
-
38
-
-
79960325408
-
Networks for systems biology: Conceptual connection of data and function
-
F. Emmert-Streib, and M. Dehmer Networks for systems biology: conceptual connection of data and function IET Syst. Biol. 5 2011 185 207
-
(2011)
IET Syst. Biol.
, vol.5
, pp. 185-207
-
-
Emmert-Streib, F.1
Dehmer, M.2
-
39
-
-
84860700562
-
Exploring statistical and population aspects of network complexity
-
F. Emmert-Streib, and M. Dehmer Exploring statistical and population aspects of network complexity PLoS ONE 7 2012 e34523
-
(2012)
PLoS ONE
, vol.7
, pp. e34523
-
-
Emmert-Streib, F.1
Dehmer, M.2
-
40
-
-
49749142261
-
Classification of large graphs by a local tree decomposition
-
H.R.A. et al.
-
F. Emmert-Streib, M. Dehmer, and J. Kilian Classification of large graphs by a local tree decomposition H.R.A. et al., Proceedings of DMIN'05, International Conference on Data Mining, Las Vegas, USA 2006 200 207
-
(2006)
Proceedings of DMIN'05, International Conference on Data Mining, Las Vegas, USA
, pp. 200-207
-
-
Emmert-Streib, F.1
Dehmer, M.2
Kilian, J.3
-
41
-
-
84964371647
-
Detecting pathological pathways of the chronic fatigue syndrome by the comparison of networks
-
P. McConnell, S. Lin, A. Cuticcia, CreateSpace
-
F. Emmert-Streib, E.F. Glynn, C. Seidel, C.L. Bausch, and A. Mushegian Detecting pathological pathways of the chronic fatigue syndrome by the comparison of networks P. McConnell, S. Lin, A. Cuticcia, Methods of Microarray Data Analysis VI 2009 CreateSpace
-
(2009)
Methods of Microarray Data Analysis VI
-
-
Emmert-Streib, F.1
Glynn, E.F.2
Seidel, C.3
Bausch, C.L.4
Mushegian, A.5
-
44
-
-
0000673504
-
Multivariate generalizations of the Wald-Wolfowitz and Smirnov two-sample tests
-
J.H. Friedman, and L.C. Rafsky Multivariate generalizations of the Wald-Wolfowitz and Smirnov two-sample tests Ann. Stat. 7 4 1979 697 717
-
(1979)
Ann. Stat.
, vol.7
, Issue.4
, pp. 697-717
-
-
Friedman, J.H.1
Rafsky, L.C.2
-
45
-
-
55949083343
-
Neuroendocrine and immune network re-modeling in chronic fatigue syndrome: An exploratory analysis
-
J. Fuite, S. Vernon, and G. Broderick Neuroendocrine and immune network re-modeling in chronic fatigue syndrome: an exploratory analysis Genomics 92 2008 393 399
-
(2008)
Genomics
, vol.92
, pp. 393-399
-
-
Fuite, J.1
Vernon, S.2
Broderick, G.3
-
46
-
-
73749086870
-
A survey of graph edit distance
-
X. Gao, B. Xiao, D. Tao, and X. Li A survey of graph edit distance Pattern Anal. Appl. 13 1 2010 113 129 10.1007/s10044-008-0141-y
-
(2010)
Pattern Anal. Appl.
, vol.13
, Issue.1
, pp. 113-129
-
-
Gao, X.1
Xiao, B.2
Tao, D.3
Li, X.4
-
48
-
-
9444266406
-
On graph kernels: Hardness results and efficient alternatives
-
T. Gärtner, P.A. Flach, and S. Wrobel On graph kernels: hardness results and efficient alternatives COLT 2003 129 143
-
(2003)
COLT
, pp. 129-143
-
-
Gärtner, T.1
Flach, P.A.2
Wrobel, S.3
-
49
-
-
34248174738
-
Measuring the similarity of complex structures by means of graph grammars
-
D. Gernert Measuring the similarity of complex structures by means of graph grammars Bull. EATCS 7 1979 3 9
-
(1979)
Bull. EATCS
, vol.7
, pp. 3-9
-
-
Gernert, D.1
-
50
-
-
34248154611
-
Graph grammars which generate graphs with specified properties
-
D. Gernert Graph grammars which generate graphs with specified properties Bull. EATCS 13 1981 13 20
-
(1981)
Bull. EATCS
, vol.13
, pp. 13-20
-
-
Gernert, D.1
-
51
-
-
77950544798
-
A statistical framework for differential network analysis from microarray data
-
R. Gill, S. Datta, and S. Datta A statistical framework for differential network analysis from microarray data BMC Bioinformat. 11 1 2010 95
-
(2010)
BMC Bioinformat.
, vol.11
, Issue.1
, pp. 95
-
-
Gill, R.1
Datta, S.2
Datta, S.3
-
53
-
-
0003780715
-
-
Addison Wesley Publishing Company Reading, MA, USA
-
F. Harary Graph Theory 1969 Addison Wesley Publishing Company Reading, MA, USA
-
(1969)
Graph Theory
-
-
Harary, F.1
-
54
-
-
84907022389
-
Hubalign: An accurate and efficient method for global alignment of protein-protein interaction networks
-
S. Hashemifar, and J. Xu Hubalign: an accurate and efficient method for global alignment of protein-protein interaction networks Bioinformatics 30 17 2014 i438 i444
-
(2014)
Bioinformatics
, vol.30
, Issue.17
, pp. i438-i444
-
-
Hashemifar, S.1
Xu, J.2
-
55
-
-
84874289423
-
Graphlet-based measures are suitable for biological network comparison
-
W. Hayes, K. Sun, and N. Przulj Graphlet-based measures are suitable for biological network comparison Bioinformatics 29 4 2013 483 491
-
(2013)
Bioinformatics
, vol.29
, Issue.4
, pp. 483-491
-
-
Hayes, W.1
Sun, K.2
Przulj, N.3
-
58
-
-
43049099687
-
Graph-based representation for similarity retrieval of symbolic images
-
S.M. Hsieh, and C.C. Hsu Graph-based representation for similarity retrieval of symbolic images Data Knowl. Eng. 65 3 2008 401 418
-
(2008)
Data Knowl. Eng.
, vol.65
, Issue.3
, pp. 401-418
-
-
Hsieh, S.M.1
Hsu, C.C.2
-
59
-
-
84929142462
-
Localali: An evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks
-
J. Hu, and K. Reinert Localali: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks Bioinformatics 31 3 2014 363 372
-
(2014)
Bioinformatics
, vol.31
, Issue.3
, pp. 363-372
-
-
Hu, J.1
Reinert, K.2
-
62
-
-
33750816097
-
Graphmetriken und Distanzgraphen
-
F. Kaden Graphmetriken und Distanzgraphen ZKI-Inform. Akad. Wiss. DDR 2 82 1982 1 63
-
(1982)
ZKI-Inform. Akad. Wiss. DDR
, vol.2
, Issue.82
, pp. 1-63
-
-
Kaden, F.1
-
63
-
-
84892817305
-
Halbgeordnete Graphmengen und Graphmetriken
-
H. Sachs, Teubner Leipzig, DDR
-
F. Kaden Halbgeordnete Graphmengen und Graphmetriken H. Sachs, Graphs, Hypergraphs, and Applications 73 1985 Teubner Leipzig, DDR 92 95
-
(1985)
Graphs, Hypergraphs, and Applications
, vol.73
, pp. 92-95
-
-
Kaden, F.1
-
64
-
-
34248150773
-
Graphmetriken und Isometrieproblemezugehöriger Distanzgraphen
-
F. Kaden Graphmetriken und Isometrieproblemezugehöriger Distanzgraphen ZKI-Inform. Akad. Wiss. DDR 1986 1 100
-
(1986)
ZKI-Inform. Akad. Wiss. DDR
, pp. 1-100
-
-
Kaden, F.1
-
65
-
-
84925015929
-
Graph similarity and distances
-
Bodendiek R. Henn, Physica-Verlag
-
F. Kaden Graph similarity and distances Bodendiek R. Henn, Topics in Combinatorics and Graph Theory 1990 Physica-Verlag 397 404
-
(1990)
Topics in Combinatorics and Graph Theory
, pp. 397-404
-
-
Kaden, F.1
-
66
-
-
60849107715
-
A new graph-based method for pairwise global network alignment
-
G.W. Klau A new graph-based method for pairwise global network alignment BMC Bioinform. 10 1 2009
-
(2009)
BMC Bioinform.
, vol.10
, Issue.1
-
-
Klau, G.W.1
-
67
-
-
4243148480
-
Authoritative sources in a hyperlinked environment
-
J.M. Kleinberg Authoritative sources in a hyperlinked environment J. ACM 46 5 1999 604 632
-
(1999)
J. ACM
, vol.46
, Issue.5
, pp. 604-632
-
-
Kleinberg, J.M.1
-
68
-
-
33645985807
-
Pairwise alignment of protein interaction networks
-
M. Koyutürk, Y. Kim, U. Topkara, S. Subramaniam, W. Szpankowski, and A. Grama Pairwise alignment of protein interaction networks J. Comput. Biol. 13 2 2006 182 199
-
(2006)
J. Comput. Biol.
, vol.13
, Issue.2
, pp. 182-199
-
-
Koyutürk, M.1
Kim, Y.2
Topkara, U.3
Subramaniam, S.4
Szpankowski, W.5
Grama, A.6
-
69
-
-
77956576710
-
Topological network alignment uncovers biological function and phylogeny
-
O. Kuchaiev, T. Milenković, V. Memišević, W. Hayes, and N. Pržulj Topological network alignment uncovers biological function and phylogeny J. R. Soc. Interf. 7 50 2010 1341 1354
-
(2010)
J. R. Soc. Interf.
, vol.7
, Issue.50
, pp. 1341-1354
-
-
Kuchaiev, O.1
Milenković, T.2
Memišević, V.3
Hayes, W.4
Pržulj, N.5
-
70
-
-
0001116877
-
Binary codes capable of correcting deletions, insertions, and reversals
-
V.I. Levenstein Binary codes capable of correcting deletions, insertions, and reversals Sov. Phys. - Doklady 10 8 1966 707 710
-
(1966)
Sov. Phys. - Doklady
, vol.10
, Issue.8
, pp. 707-710
-
-
Levenstein, V.I.1
-
71
-
-
3242727998
-
Molecular similarity measures
-
Humana Press Totowa, NJ, USA
-
G.M. Maggiora, and V. Shanmugasundaram Molecular similarity measures Chemoinformatics: Concepts, Methods, and Tools for Drug Discovery 2004 Humana Press Totowa, NJ, USA 1 50
-
(2004)
Chemoinformatics: Concepts, Methods, and Tools for Drug Discovery
, pp. 1-50
-
-
Maggiora, G.M.1
Shanmugasundaram, V.2
-
72
-
-
84964377536
-
Towards logical hypertext structure - A graph-theoretic perspective
-
T. Böhme, G. Heyer, Lecture Notes in Computer Science Springer Berlin/New York
-
A. Mehler, M. Dehmer, and R. Gleim Towards logical hypertext structure - a graph-theoretic perspective T. Böhme, G. Heyer, Proceedings of the Fourth International Workshop on Innovative Internet Computing Systems (I2CS '04) Lecture Notes in Computer Science 3473 2004 Springer Berlin/New York 136 150
-
(2004)
Proceedings of the Fourth International Workshop on Innovative Internet Computing Systems (I2CS '04)
, vol.3473
, pp. 136-150
-
-
Mehler, A.1
Dehmer, M.2
Gleim, R.3
-
73
-
-
77956414002
-
A network model of interpersonal alignment
-
A. Mehler, P. Weiß, and A. Lücking A network model of interpersonal alignment Entropy 12 6 2010 1440 1483 10.3390/e12061440
-
(2010)
Entropy
, vol.12
, Issue.6
, pp. 1440-1483
-
-
Mehler, A.1
Weiß, P.2
Lücking, A.3
-
75
-
-
84911887210
-
Distance-based analysis of variance: Approximate inference
-
C. Minas, and G. Montana Distance-based analysis of variance: approximate inference Stat. Anal. Data Mining 7 6 2014 450 470 10.1002/sam.11227
-
(2014)
Stat. Anal. Data Mining
, vol.7
, Issue.6
, pp. 450-470
-
-
Minas, C.1
Montana, G.2
-
76
-
-
80053904998
-
A network-based approach to classify the three domains of life
-
L.A.J. Müller, K.G. Kugler, A. Graber, and M. Dehmer A network-based approach to classify the three domains of life Biol. Direct 6 2011 140 141
-
(2011)
Biol. Direct
, vol.6
, pp. 140-141
-
-
Müller, L.A.J.1
Kugler, K.G.2
Graber, A.3
Dehmer, M.4
-
79
-
-
84879967643
-
NETAL: A new graph-based method for global alignment of protein-protein interaction networks
-
B. Neyshabur, A. Khadem, S. Hashemifar, and S.S. Arab NETAL: a new graph-based method for global alignment of protein-protein interaction networks Bioinformatics 2013
-
(2013)
Bioinformatics
-
-
Neyshabur, B.1
Khadem, A.2
Hashemifar, S.3
Arab, S.S.4
-
80
-
-
84870396392
-
Global network alignment using multiscale spectral signatures
-
R. Patro, and C. Kingsford Global network alignment using multiscale spectral signatures Bioinformatics 28 23 2012 3105 3114
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3105-3114
-
-
Patro, R.1
Kingsford, C.2
-
81
-
-
84860471091
-
Pinalog: A novel approach to align protein interaction networks implications for complex detection and function prediction
-
H.T.T. Phan, and M.J.E. Sternberg Pinalog: a novel approach to align protein interaction networks implications for complex detection and function prediction Bioinformatics 28 9 2012 1239 1245
-
(2012)
Bioinformatics
, vol.28
, Issue.9
, pp. 1239-1245
-
-
Phan, H.T.T.1
Sternberg, M.J.E.2
-
82
-
-
33846672214
-
Network comparison using graphlet degree distribution
-
N. Pržulj Network comparison using graphlet degree distribution Bioinformatics 23 2007 e177 e183
-
(2007)
Bioinformatics
, vol.23
, pp. e177-e183
-
-
Pržulj, N.1
-
83
-
-
84907910598
-
Node fingerprinting: An efficient heuristic for aligning biological networks
-
A. Radu, and M. Charleston Node fingerprinting: an efficient heuristic for aligning biological networks J. Comput. Biol. 21 10 2014 760 770
-
(2014)
J. Comput. Biol.
, vol.21
, Issue.10
, pp. 760-770
-
-
Radu, A.1
Charleston, M.2
-
84
-
-
84870441671
-
Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses
-
Y. Rahmatallah, F. Emmert-Streib, and G. Glazko Gene set analysis for self-contained tests: complex null and specific alternative hypotheses Bioinformatics 28 23 2012 3073 3080
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3073-3080
-
-
Rahmatallah, Y.1
Emmert-Streib, F.2
Glazko, G.3
-
85
-
-
84893275855
-
Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets
-
Y. Rahmatallah, F. Emmert-Streib, and G. Glazko Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets Bioinformatics 30 3 2014 360 368
-
(2014)
Bioinformatics
, vol.30
, Issue.3
, pp. 360-368
-
-
Rahmatallah, Y.1
Emmert-Streib, F.2
Glazko, G.3
-
86
-
-
0002887739
-
Design of molecules with desired properties. Molecular similarity approach to property optimization
-
M.A. Johnson, G. Maggiora, Wiley
-
M. Randić Design of molecules with desired properties. molecular similarity approach to property optimization M.A. Johnson, G. Maggiora, Concepts and Applications of Molecular Similarity 1990 Wiley 77 145
-
(1990)
Concepts and Applications of Molecular Similarity
, pp. 77-145
-
-
Randić, M.1
-
87
-
-
0010037175
-
Graph theoretical approach to recognition of structural similarity in molecules
-
M. Randić, and C.L. Wilkins Graph theoretical approach to recognition of structural similarity in molecules J. Chem. Inf. Comput. Sci. 19 1979 31 37
-
(1979)
J. Chem. Inf. Comput. Sci.
, vol.19
, pp. 31-37
-
-
Randić, M.1
Wilkins, C.L.2
-
88
-
-
77956496698
-
How threshold behaviour affects the use of subgraphs for network comparison
-
T. Rito, Z. Wang, C.M. Deane, and G. Reinert How threshold behaviour affects the use of subgraphs for network comparison Bioinformatics 26 18 2010 i611 i617
-
(2010)
Bioinformatics
, vol.26
, Issue.18
, pp. i611-i617
-
-
Rito, T.1
Wang, Z.2
Deane, C.M.3
Reinert, G.4
-
93
-
-
0342699024
-
Fast algorithms to determine RNA secondary structures containing multiple loops
-
D. Sankoff, J. Kruskal, Addison-Wesley
-
D. Sankoff, J.B. Kruskal, S. Mainville, and R.J. Cedergren Fast algorithms to determine RNA secondary structures containing multiple loops D. Sankoff, J. Kruskal, Time Warps, String Edits and Macromolecules: The Theory and Practice of Sequence Comparison 1983 Addison-Wesley 93 120
-
(1983)
Time Warps, String Edits and Macromolecules: The Theory and Practice of Sequence Comparison
, pp. 93-120
-
-
Sankoff, D.1
Kruskal, J.B.2
Mainville, S.3
Cedergren, R.J.4
-
95
-
-
84921734389
-
MAGNA: Maximizing accuracy in global network alignment
-
V. Saraph, and T. Milenkovi MAGNA: Maximizing accuracy in global network alignment Bioinformatics 2014
-
(2014)
Bioinformatics
-
-
Saraph, V.1
Milenkovi, T.2
-
96
-
-
21744447818
-
A connectionist approach to structural similarity determination as a basis of clustering, classification and feature detection
-
J. Komorowski, J. Zytkow, Trondheim, Norway
-
C. Schädler, and F. Wysotzki A connectionist approach to structural similarity determination as a basis of clustering, classification and feature detection J. Komorowski, J. Zytkow, Principles of Data Mining and Knowledge Discovery. Proceedings of the First European Symposium on the Principles of Data Mining and Knowledge Discovery 1997 Trondheim, Norway 254 264
-
(1997)
Principles of Data Mining and Knowledge Discovery. Proceedings of the First European Symposium on the Principles of Data Mining and Knowledge Discovery
, pp. 254-264
-
-
Schädler, C.1
Wysotzki, F.2
-
97
-
-
0001122858
-
The tree-to-tree editing problem
-
S.M. Selkow The tree-to-tree editing problem Inf. Process. Lett. 6 6 1977 184 186
-
(1977)
Inf. Process. Lett.
, vol.6
, Issue.6
, pp. 184-186
-
-
Selkow, S.M.1
-
98
-
-
0035312753
-
Graph matching vs mutual information maximization for object detection
-
L.B. Shams, M.J. Brady, and S. Schaal Graph matching vs mutual information maximization for object detection Neural Netw. 14 3 2001 345 354
-
(2001)
Neural Netw.
, vol.14
, Issue.3
, pp. 345-354
-
-
Shams, L.B.1
Brady, M.J.2
Schaal, S.3
-
99
-
-
33645732240
-
Modeling cellular machinery through biological network comparison.
-
R. Sharan, and T. Ideker Modeling cellular machinery through biological network comparison. Nat. Biotechnol. 24 4 2006 427 433
-
(2006)
Nat. Biotechnol.
, vol.24
, Issue.4
, pp. 427-433
-
-
Sharan, R.1
Ideker, T.2
-
100
-
-
0000618620
-
Molecular similarity. 1. Analytical description of the set of graph similarity measures
-
M.I. Skvortsova, I.I. Baskin, I.V. Stankevich, V.A. Palyulin, and N.S. Zefirov Molecular similarity. 1. Analytical description of the set of graph similarity measures J. Chem. Inf. Comput. Sci. 38 1998 785 790
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, pp. 785-790
-
-
Skvortsova, M.I.1
Baskin, I.I.2
Stankevich, I.V.3
Palyulin, V.A.4
Zefirov, N.S.5
-
101
-
-
33750843858
-
Graphmetriken und Klassifikation strukturierter Objekte
-
F. Sobik Graphmetriken und Klassifikation strukturierter Objekte ZKI-Inform. Akad. Wiss. DDR 2 82 1982 63 122
-
(1982)
ZKI-Inform. Akad. Wiss. DDR
, vol.2
, Issue.82
, pp. 63-122
-
-
Sobik, F.1
-
102
-
-
33750837832
-
Modellierung von Vergleichsprozessen auf der Grundlage von Ähnlichkeitsmaßen für Graphen
-
F. Sobik Modellierung von Vergleichsprozessen auf der Grundlage von Ähnlichkeitsmaßen für Graphen ZKI-Inform. Akad. Wiss. DDR 4 1986 104 144
-
(1986)
ZKI-Inform. Akad. Wiss. DDR
, vol.4
, pp. 104-144
-
-
Sobik, F.1
-
103
-
-
33745770038
-
Simulation-based graph similarity
-
LNCS Springer
-
O. Sokolsky, S. Kannan, and I. Lee Simulation-based graph similarity TACAS LNCS 2006 Springer 426 440
-
(2006)
TACAS
, pp. 426-440
-
-
Sokolsky, O.1
Kannan, S.2
Lee, I.3
-
106
-
-
49849104844
-
Operations on cognitive structures - Their modeling on the basis of graph theory
-
D. Albert, Springer
-
E. Sommerfeld, and F. Sobik Operations on cognitive structures - their modeling on the basis of graph theory D. Albert, Knowledge Structures 1994 Springer 146 190
-
(1994)
Knowledge Structures
, pp. 146-190
-
-
Sommerfeld, E.1
Sobik, F.2
-
107
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
U. Stelzl, U. Worm, M. Lalowski, C. Haenig, F. Brembeck, H. Goehler, M. Stroedicke, M. Zenkner, A. Schoenherr, S. Koeppen, J. Timm, S. Mintzlaff, C. Abraham, N. Bock, S. Kietzmann, A. Goedde, E. Toksz, A. Droege, S. Krobitsch, B. Korn, W. Birchmeier, H. Lehrach, and E. Wanker A human protein-protein interaction network: a resource for annotating the proteome Cell 122 6 2005 957 968
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.23
more..
-
109
-
-
0018491659
-
The tree-to-tree correction problem
-
K.C. Tai The tree-to-tree correction problem J. ACM 26 3 1979 422 433
-
(1979)
J. ACM
, vol.26
, Issue.3
, pp. 422-433
-
-
Tai, K.C.1
-
110
-
-
33745380392
-
A similarity measure for color image retrieval and indexing based on the multivariate two sample problem
-
C. Theoharatos, N. Laskaris, G. Economou, and S. Fotopoulos A similarity measure for color image retrieval and indexing based on the multivariate two sample problem Proceedings of EUSIPCO, Vienna, Austria 2004 2307 2310
-
(2004)
Proceedings of EUSIPCO, Vienna, Austria
, pp. 2307-2310
-
-
Theoharatos, C.1
Laskaris, N.2
Economou, G.3
Fotopoulos, S.4
-
111
-
-
33745363460
-
Multivariate image similarity in the compressed domain using statistical graph matching
-
C. Theoharatos, V.K. Pothos, N.A. Laskaris, G. Economou, and S. Fotopoulos Multivariate image similarity in the compressed domain using statistical graph matching Pattern Recognit. 39 10 2006 1892 1904
-
(2006)
Pattern Recognit.
, vol.39
, Issue.10
, pp. 1892-1904
-
-
Theoharatos, C.1
Pothos, V.K.2
Laskaris, N.A.3
Economou, G.4
Fotopoulos, S.5
-
112
-
-
84905862253
-
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks
-
Y. Tian, B. Zhang, E.P. Hoffman, R. Clarke, Z. Zhang, I.-M. Shih, J. Xuan, D.M. Herrington, and Y. Wang Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks BMC Syst. Biol. 8 1 2014 87
-
(2014)
BMC Syst. Biol.
, vol.8
, Issue.1
, pp. 87
-
-
Tian, Y.1
Zhang, B.2
Hoffman, E.P.3
Clarke, R.4
Zhang, Z.5
Shih, I.-M.6
Xuan, J.7
Herrington, D.M.8
Wang, Y.9
-
113
-
-
84958746929
-
Graph isomorphism: Its complexity and algorithms (abstract)
-
C.P. Rangan, V. Raman, R. Ramanujam, Lecture Notes in Computer Science Springer
-
S. Toda Graph isomorphism: its complexity and algorithms (abstract) C.P. Rangan, V. Raman, R. Ramanujam, FSTTCS, Foundations of Software Technology and Theoretical Computer Science, 19th Conference, Chennai, India, December 13-15, 1999, Proceedings Lecture Notes in Computer Science 1738 1999 Springer 341
-
(1999)
FSTTCS, Foundations of Software Technology and Theoretical Computer Science, 19th Conference, Chennai, India, December 13-15, 1999, Proceedings
, vol.1738
, pp. 341
-
-
Toda, S.1
-
115
-
-
58149411184
-
Features of similarity
-
A. Tversky Features of similarity Psychol. Rev. 84 1977 327 352
-
(1977)
Psychol. Rev.
, vol.84
, pp. 327-352
-
-
Tversky, A.1
-
116
-
-
0016870630
-
An algorithm for subgraph isomorphism
-
J.R. Ullmann An algorithm for subgraph isomorphism J. ACM 23 1 1976 31 42
-
(1976)
J. ACM
, vol.23
, Issue.1
, pp. 31-42
-
-
Ullmann, J.R.1
-
119
-
-
77951085620
-
Random projection experiments with chemometric data
-
K. Varmuza, P. Filzmoser, and B. Liebmann Random projection experiments with chemometric data J. Chemom. 24 2010 209 217
-
(2010)
J. Chemom.
, vol.24
, pp. 209-217
-
-
Varmuza, K.1
Filzmoser, P.2
Liebmann, B.3
-
120
-
-
0000086098
-
Some unsolved problems in graph theory
-
V.G. Vizing Some unsolved problems in graph theory Uspehi Mat. Naukno. 23 1968 117 134
-
(1968)
Uspehi Mat. Naukno.
, vol.23
, pp. 117-134
-
-
Vizing, V.G.1
-
121
-
-
77951192371
-
Global screening of potential Candida albicansbiofilm-related transcription factors via network comparison
-
Y.-C. Wang, C.-Y. Lan, W.-P. Hsieh, L. Murillo, N. Agabian, and B.-S. Chen Global screening of potential Candida albicansbiofilm-related transcription factors via network comparison BMC Bioinform. 11 1 2010 53
-
(2010)
BMC Bioinform.
, vol.11
, Issue.1
, pp. 53
-
-
Wang, Y.-C.1
Lan, C.-Y.2
Hsieh, W.-P.3
Murillo, L.4
Agabian, N.5
Chen, B.-S.6
-
122
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
D.J. Watts, and S.H. Strogatz Collective dynamics of 'small-world' networks Nature 393 1998 440 442
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
124
-
-
36248998189
-
Graph similarity scoring and matching
-
L.A. Zager, and G.C. Verghese Graph similarity scoring and matching Appl. Math. Lett. 21 2008 86 94
-
(2008)
Appl. Math. Lett.
, vol.21
, pp. 86-94
-
-
Zager, L.A.1
Verghese, G.C.2
-
125
-
-
0040994741
-
On a certain distance between isomorphism classes of graphs
-
B. Zelinka On a certain distance between isomorphism classes of graphs Časopis pro pěst. Math. 100 1975 371 373
-
(1975)
Časopis Pro Pěst. Math.
, vol.100
, pp. 371-373
-
-
Zelinka, B.1
|