ITD assembler: An algorithm for internal tandem duplication discovery from short-read sequencing data

BMC Bioinformatics

Volumn 17, Issue 1, 2016, Pages

  Rustagi, Navin ^a,b   Hampton, Oliver A ^a   Li, Jie ^a,c   Xi, Liu ^a   Gibbs, Richard A ^a   Plon, Sharon E ^a,d   Kimmel, Marek ^a   Wheeler, David A ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b Rice University   (United States)

^c CENTRAL SOUTH UNIVERSITY   (China)

^d TEXAS CHILDREN S HOSPITAL   (United States)

Author keywords

AML; Assembly; Cancer genetics; Clustering; Data mining; De Bruijn graphs; FLT3; Somatic mutations; Tandem duplication

Indexed keywords

ALGORITHMS; ASSEMBLY; DATA MINING; DISEASES;

CANCER GENETICS; CLUSTERING; DE BRUIJN GRAPHS; FLT3; SOMATIC MUTATION; TANDEM DUPLICATIONS;

GENES;

CD135 ANTIGEN; FLT3 PROTEIN, HUMAN;

ALGORITHM; EXOME; EXON; GENETICS; HUMAN; LEUKEMIA, MYELOID, ACUTE; MOLECULAR DIAGNOSIS; MUTATION; TANDEM REPEAT;

ALGORITHMS; EXOME; EXONS; FMS-LIKE TYROSINE KINASE 3; HUMANS; LEUKEMIA, MYELOID, ACUTE; MOLECULAR DIAGNOSTIC TECHNIQUES; MUTATION; TANDEM REPEAT SEQUENCES;

EID: 84964219437     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1031-8     Document Type: Article

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