-
1
-
-
0027751663
-
The C. Elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R.C., Feinbaum, R.L. and Ambros, V. (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75, 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
2
-
-
65849520676
-
Current tools for the identification of miRNA genes and their targets
-
Mendes, N.D., Freitas, A.T. and Sagot, M.F. (2009) Current tools for the identification of miRNA genes and their targets. Nucleic Acids Res., 37, 2419-2433.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2419-2433
-
-
Mendes, N.D.1
Freitas, A.T.2
Sagot, M.F.3
-
3
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim, L.P., Lau, N.C., Weinstein, E.G., Abdelhakim, A., Yekta, S., Rhoades, M.W., Burge, C.B. and Bartel, D.P. (2003) The microRNAs of Caenorhabditis elegans. Genes Dev., 17, 991-1008.
-
(2003)
Genes Dev.
, vol.17
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
4
-
-
0038825783
-
Computational identification of Drosophila microRNA genes
-
Lai, E.C., Tomancak, P., Williams, R.W. and Rubin, G.M. (2003) Computational identification of Drosophila microRNA genes. Genome Biol., 4, R42.
-
(2003)
Genome Biol.
, vol.4
, pp. R42
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
Rubin, G.M.4
-
5
-
-
67849114241
-
MiRanalyzer: A microRNA detection and analysis tool for next-generation sequencing experiments
-
Hackenberg, M., Sturm, M., Langenberger, D., Falcon-Perez, J.M. and Aransay, A.M. (2009) miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res., 37, W68-W76.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W68-W76
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcon-Perez, J.M.4
Aransay, A.M.5
-
6
-
-
77956508095
-
MIReNA: Finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
-
Mathelier, A. and Carbone, A. (2010) MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics, 26, 2226-2234.
-
(2010)
Bioinformatics
, vol.26
, pp. 2226-2234
-
-
Mathelier, A.1
Carbone, A.2
-
7
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander, M.R., Chen, W., Adamidi, C., Maaskola, J., Einspanier, R., Knespel, S. and Rajewsky, N. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol., 26, 407-415.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
8
-
-
84855293838
-
MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedländer, M.R., Mackowiak, S.D., Li, N., Chen, W. and Rajewsky, N. (2011) miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res., 40, 37-52.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. 37-52
-
-
Friedländer, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
9
-
-
78651339534
-
NCBI GEO: Archive for functional genomics data sets-10 years on
-
Barrett, T., Troup, D.B., Wilhite, S.E., Ledoux, P., Evangelista, C., Kim, I.F., Tomashevsky, M., Marshall, K.A., Phillippy, K.H., Sherman, P.M., et al. (2011) NCBI GEO: archive for functional genomics data sets-10 years on. Nucleic Acids Res., 39, D1005-D1010.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D1005-D1010
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Evangelista, C.5
Kim, I.F.6
Tomashevsky, M.7
Marshall, K.A.8
Phillippy, K.H.9
Sherman, P.M.10
-
10
-
-
38549150275
-
MiRBase: Tools for microRNA genomics
-
Griffiths-Jones, S., Saini, H.K., van Dongen, S. and Enright, A.J. (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res., 36, D154-D158.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D154-D158
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Van Dongen, S.3
Enright, A.J.4
-
11
-
-
84924388328
-
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs
-
Londin, E., Loher, P., Telonis, A.G., Quann, K., Clark, P., Jing, Y., Hatzimichael, E., Kirino, Y., Honda, S., Lally, M., et al. (2015) Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. Proc. Natl. Acad. Sci. U.S.A., 112, E1106-E1115.
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E1106-E1115
-
-
Londin, E.1
Loher, P.2
Telonis, A.G.3
Quann, K.4
Clark, P.5
Jing, Y.6
Hatzimichael, E.7
Kirino, Y.8
Honda, S.9
Lally, M.10
-
12
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A.R., Lorenz, R., Bernhart, S.H., Neubock, R. and Hofacker, I.L. (2008) The Vienna RNA websuite. Nucleic Acids Res., 36, W70-W74.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W70-W74
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neubock, R.4
Hofacker, I.L.5
-
13
-
-
84880956260
-
A blood based 12-miRNA signature of Alzheimer disease patients
-
Leidinger, P., Backes, C., Deutscher, S., Schmitt, K., Mueller, S.C., Frese, K., Haas, J., Ruprecht, K., Paul, F., Stahler, C., et al. (2013) A blood based 12-miRNA signature of Alzheimer disease patients. Genome Biol., 14, R78.
-
(2013)
Genome Biol.
, vol.14
, pp. R78
-
-
Leidinger, P.1
Backes, C.2
Deutscher, S.3
Schmitt, K.4
Mueller, S.C.5
Frese, K.6
Haas, J.7
Ruprecht, K.8
Paul, F.9
Stahler, C.10
-
14
-
-
84895733395
-
Comprehensive analysis of microRNA profiles in multiple sclerosis including next-generation sequencing
-
Keller, A., Leidinger, P., Steinmeyer, F., Stahler, C., Franke, A., Hemmrich-Stanisak, G., Kappel, A., Wright, I., Dorr, J., Paul, F., et al. (2014) Comprehensive analysis of microRNA profiles in multiple sclerosis including next-generation sequencing. Mult. Scler., 20, 295-303.
-
(2014)
Mult. Scler.
, vol.20
, pp. 295-303
-
-
Keller, A.1
Leidinger, P.2
Steinmeyer, F.3
Stahler, C.4
Franke, A.5
Hemmrich-Stanisak, G.6
Kappel, A.7
Wright, I.8
Dorr, J.9
Paul, F.10
-
15
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
16
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
17
-
-
0036703184
-
The expanding snoRNA world
-
Bachellerie, J.P., Cavaille, J. and Huttenhofer, A. (2002) The expanding snoRNA world. Biochimie, 84, 775-790.
-
(2002)
Biochimie
, vol.84
, pp. 775-790
-
-
Bachellerie, J.P.1
Cavaille, J.2
Huttenhofer, A.3
-
18
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T., Barker, D., Birney, E., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., et al. (2002) The Ensembl genome database project. Nucleic Acids Res., 30, 38-41.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
19
-
-
84860742355
-
NONCODE v3.0: Integrative annotation of long noncoding RNAs
-
Bu, D., Yu, K., Sun, S., Xie, C., Skogerbo, G., Miao, R., Xiao, H., Liao, Q., Luo, H., Zhao, G., et al. (2012) NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res., 40, D210-D215.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D210-D215
-
-
Bu, D.1
Yu, K.2
Sun, S.3
Xie, C.4
Skogerbo, G.5
Miao, R.6
Xiao, H.7
Liao, Q.8
Luo, H.9
Zhao, G.10
-
20
-
-
84896723791
-
Comparative microRNA profiling of prostate carcinomas with increasing tumor stage by deep sequencing
-
Hart, M., Nolte, E., Wach, S., Szczyrba, J., Taubert, H., Rau, T.T., Hartmann, A., Grasser, F.A. and Wullich, B. (2014) Comparative microRNA profiling of prostate carcinomas with increasing tumor stage by deep sequencing. Mol. Cancer Res., 12, 250-263.
-
(2014)
Mol. Cancer Res.
, vol.12
, pp. 250-263
-
-
Hart, M.1
Nolte, E.2
Wach, S.3
Szczyrba, J.4
Taubert, H.5
Rau, T.T.6
Hartmann, A.7
Grasser, F.A.8
Wullich, B.9
-
21
-
-
58849112575
-
Biogenesis of small RNAs in animals
-
Kim, V.N., Han, J. and Siomi, M.C. (2009) Biogenesis of small RNAs in animals. Nat. Rev. Mol. Cell Biol., 10, 126-139.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 126-139
-
-
Kim, V.N.1
Han, J.2
Siomi, M.C.3
-
22
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana, M., Rauhut, R., Lendeckel, W. and Tuschl, T. (2001) Identification of novel genes coding for small expressed RNAs. Science, 294, 853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
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