Global genomic epidemiology of Salmonella enterica serovar Typhimurium DT104

Applied and Environmental Microbiology

Volumn 82, Issue 8, 2016, Pages 2516-2526

  Leekitcharoenphon, Pimlapas ^a   Hendriksen, Rene S ^a   Le Hello, Simon ^b   Weill, François Xavier ^b   Baggesen, Dorte Lau ^a   Jun, Se Ran ^c   Ussery, David W ^a,c   Lund, Ole ^a   Crook, Derrick W ^d   Wilson, Daniel J ^d,e   Aarestrup, Frank M ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b INSTITUT PASTEUR   (France)

^c OAK RIDGE NATIONAL LABORATORY   (United States)

^d UNIVERSITY OF OXFORD   (United Kingdom)

^e UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; GENES;

95% CREDIBLE INTERVALS; BAYESIAN FRAMEWORKS; MULTIDRUG RESISTANTS; MULTIPLE TRANSMISSION; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; SALMONELLA INFECTIONS; TEMPORAL AND SPATIAL; WHOLE GENOME SEQUENCING;

SALMONELLA;

BACTERIUM; BAYESIAN ANALYSIS; CLONE; DEMOGRAPHIC HISTORY; DISEASE TRANSMISSION; DIVERGENCE; DRUG RESISTANCE; EPIDEMIOLOGY; GENE EXPRESSION; GENETIC ANALYSIS; GENOMICS; MUTATION; PHYLOGENETICS;

CANADA; DENMARK; JAPAN; TAIWAN; THAILAND; UNITED STATES;

ANIMALIA; SALMONELLA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM; SALMONELLA TYPHIMURIUM; SUIDAE;

ANIMAL; BACTERIAL GENOME; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; GLOBAL HEALTH; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR TYPING; MULTIDRUG RESISTANCE; PHYLOGEOGRAPHY; PIG; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; SALMONELLA INFECTIONS; SALMONELLA INFECTIONS, ANIMAL; SINGLE NUCLEOTIDE POLYMORPHISM; SPATIOTEMPORAL ANALYSIS; SWINE DISEASES; TRANSMISSION;

ANIMALS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; EVOLUTION, MOLECULAR; GENOME, BACTERIAL; GENOTYPE; GLOBAL HEALTH; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; PHYLOGEOGRAPHY; POLYMORPHISM, SINGLE NUCLEOTIDE; SALMONELLA INFECTIONS; SALMONELLA INFECTIONS, ANIMAL; SALMONELLA TYPHIMURIUM; SEQUENCE ANALYSIS, DNA; SPATIO-TEMPORAL ANALYSIS; SWINE; SWINE DISEASES;

EID: 84963556521     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03821-15     Document Type: Article

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