-
1
-
-
81255150242
-
Drosophila CLOCK target gene characterization: Implications for circadian tissue-specific gene expression
-
Abruzzi, K.C., Rodriguez, J., Menet, J.S., Desrochers, J., Zadina, A., Luo, W., Tkachev, S., and Rosbash, M. (2011). Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. Genes Dev. 25: 2374-2386.
-
(2011)
Genes Dev
, vol.25
, pp. 2374-2386
-
-
Abruzzi, K.C.1
Rodriguez, J.2
Menet, J.S.3
Desrochers, J.4
Zadina, A.5
Luo, W.6
Tkachev, S.7
Rosbash, M.8
-
2
-
-
84955577390
-
Revised morning loops of the Arabidopsis circadian clock based on analyses of direct regulatory interactions
-
Adams, S., Manfield, I., Stockley, P., and Carré, I.A. (2015). Revised morning loops of the Arabidopsis circadian clock based on analyses of direct regulatory interactions. PLoS One 10: e0143943.
-
(2015)
PLoS One
, vol.10
-
-
Adams, S.1
Manfield, I.2
Stockley, P.3
Carré, I.A.4
-
3
-
-
0035800467
-
Reciprocal regulation between TOC1 and LHY/ CCA1 within the Arabidopsis circadian clock
-
Alabadí, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Más, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/ CCA1 within the Arabidopsis circadian clock. Science 293: 880-883.
-
(2001)
Science
, vol.293
, pp. 880-883
-
-
Alabadí, D.1
Oyama, T.2
Yanovsky, M.J.3
Harmon, F.G.4
Más, P.5
Kay, S.A.6
-
4
-
-
0027435506
-
In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants
-
Bechtold, N., Ellis, J., and Pelletier, G. (1993). In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. Paris Life Sci. 316: 1194-1199.
-
(1993)
C. R. Acad. Sci. Paris Life Sci
, vol.316
, pp. 1194-1199
-
-
Bechtold, N.1
Ellis, J.2
Pelletier, G.3
-
5
-
-
84912099087
-
Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs
-
Berns, M.C., Nordström, K., Cremer, F., Tóth, R., Hartke, M., Simon, S., Klasen, J.R., Bürstel, I., and Coupland, G. (2014). Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs. Plant Cell 26: 3999-4018.
-
(2014)
Plant Cell
, vol.26
, pp. 3999-4018
-
-
Berns, M.C.1
Nordström, K.2
Cremer, F.3
Tóth, R.4
Hartke, M.5
Simon, S.6
Klasen, J.R.7
Bürstel, I.8
Coupland, G.9
-
6
-
-
34548699102
-
A putative CCAATbinding transcription factor is a regulator of flowering timing in Arabidopsis
-
Cai, X., Ballif, J., Endo, S., Davis, E., Liang, M., Chen, D., DeWald, D., Kreps, J., Zhu, T., and Wu, Y. (2007). A putative CCAATbinding transcription factor is a regulator of flowering timing in Arabidopsis. Plant Physiol. 145: 98-105.
-
(2007)
Plant Physiol
, vol.145
, pp. 98-105
-
-
Cai, X.1
Ballif, J.2
Endo, S.3
Davis, E.4
Liang, M.5
Chen, D.6
DeWald, D.7
Kreps, J.8
Zhu, T.9
Wu, Y.10
-
7
-
-
84879156583
-
Emerging design principles in the Arabidopsis circadian clock
-
Carré, I., and Veflingstad, S.R. (2013). Emerging design principles in the Arabidopsis circadian clock. Semin. Cell Dev. Biol. 24: 393-398.
-
(2013)
Semin. Cell Dev. Biol
, vol.24
, pp. 393-398
-
-
Carré, I.1
Veflingstad, S.R.2
-
8
-
-
84879187225
-
Global approaches for telling time: Omics and the Arabidopsis circadian clock
-
Chow, B.Y., and Kay, S.A. (2013). Global approaches for telling time: omics and the Arabidopsis circadian clock. Semin. Cell Dev. Biol. 24: 383-392.
-
(2013)
Semin. Cell Dev. Biol
, vol.24
, pp. 383-392
-
-
Chow, B.Y.1
Kay, S.A.2
-
9
-
-
79955576077
-
BROTHER OF LUX ARRHYTHMO is a component of the Arabidopsis circadian clock
-
Dai, S., Wei, X., Pei, L., Thompson, R.L., Liu, Y., Heard, J.E., Ruff, T.G., and Beachy, R.N. (2011). BROTHER OF LUX ARRHYTHMO is a component of the Arabidopsis circadian clock. Plant Cell 23: 961-972.
-
(2011)
Plant Cell
, vol.23
, pp. 961-972
-
-
Dai, S.1
Wei, X.2
Pei, L.3
Thompson, R.L.4
Liu, Y.5
Heard, J.E.6
Ruff, T.G.7
Beachy, R.N.8
-
10
-
-
79151483729
-
Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis
-
Dixon, L.E., Knox, K., Kozma-Bognar, L., Southern, M.M., Pokhilko, A., and Millar, A.J. (2011). Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis. Curr. Biol. 21: 120-125.
-
(2011)
Curr. Biol
, vol.21
, pp. 120-125
-
-
Dixon, L.E.1
Knox, K.2
Kozma-Bognar, L.3
Southern, M.M.4
Pokhilko, A.5
Millar, A.J.6
-
11
-
-
79955551575
-
Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis
-
Dong, M.A., Farré, E.M., and Thomashow, M.F. (2011). Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis. Proc. Natl. Acad. Sci. USA 108: 7241-7246.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7241-7246
-
-
Dong, M.A.1
Farré, E.M.2
Thomashow, M.F.3
-
12
-
-
84911478558
-
Tissue-specific clocks in Arabidopsis show asymmetric coupling
-
Endo, M., Shimizu, H., Nohales, M.A., Araki, T., and Kay, S.A. (2014). Tissue-specific clocks in Arabidopsis show asymmetric coupling. Nature 515: 419-422.
-
(2014)
Nature
, vol.515
, pp. 419-422
-
-
Endo, M.1
Shimizu, H.2
Nohales, M.A.3
Araki, T.4
Kay, S.A.5
-
13
-
-
11844289579
-
Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock
-
Farré, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., and Kay, S.A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15: 47-54.
-
(2005)
Curr. Biol
, vol.15
, pp. 47-54
-
-
Farré, E.M.1
Harmer, S.L.2
Harmon, F.G.3
Yanovsky, M.J.4
Kay, S.A.5
-
14
-
-
0034106785
-
The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor
-
Finkelstein, R.R., and Lynch, T.J. (2000). The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell 12: 599-609.
-
(2000)
Plant Cell
, vol.12
, pp. 599-609
-
-
Finkelstein, R.R.1
Lynch, T.J.2
-
15
-
-
84905455464
-
Rethinking transcriptional activation in the Arabidopsis circadian clock
-
Fogelmark, K., and Troein, C. (2014). Rethinking transcriptional activation in the Arabidopsis circadian clock. PLOS Comput. Biol. 10: e1003705.
-
(2014)
PLOS Comput. Biol
, vol.10
-
-
Fogelmark, K.1
Troein, C.2
-
16
-
-
18744413036
-
Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock
-
Fowler, S.G., Cook, D., and Thomashow, M.F. (2005). Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol. 137: 961-968.
-
(2005)
Plant Physiol
, vol.137
, pp. 961-968
-
-
Fowler, S.G.1
Cook, D.2
Thomashow, M.F.3
-
17
-
-
84857383458
-
Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor
-
Gendron, J.M., Pruneda-Paz, J.L., Doherty, C.J., Gross, A.M., Kang, S.E., and Kay, S.A. (2012). Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor. Proc. Natl. Acad. Sci. USA 109: 3167-3172.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 3167-3172
-
-
Gendron, J.M.1
Pruneda-Paz, J.L.2
Doherty, C.J.3
Gross, A.M.4
Kang, S.E.5
Kay, S.A.6
-
18
-
-
84901396012
-
Arabidopsis cuticular wax biosynthesis is negatively regulated by the DEWAX gene encoding an AP2/ERF-type transcription factor
-
Go, Y.S., Kim, H., Kim, H.J., and Suh, M.C. (2014). Arabidopsis cuticular wax biosynthesis is negatively regulated by the DEWAX gene encoding an AP2/ERF-type transcription factor. Plant Cell 26: 1666-1680.
-
(2014)
Plant Cell
, vol.26
, pp. 1666-1680
-
-
Go, Y.S.1
Kim, H.2
Kim, H.J.3
Suh, M.C.4
-
19
-
-
84896829577
-
The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis
-
Guan, Q., Yue, X., Zeng, H., and Zhu, J. (2014). The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell 26: 438-453.
-
(2014)
Plant Cell
, vol.26
, pp. 438-453
-
-
Guan, Q.1
Yue, X.2
Zeng, H.3
Zhu, J.4
-
20
-
-
0034671791
-
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock
-
Harmer, S.L., Hogenesch, J.B., Straume, M., Chang, H.S., Han, B., Zhu, T., Wang, X., Kreps, J.A., and Kay, S.A. (2000). Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290: 2110-2113.
-
(2000)
Science
, vol.290
, pp. 2110-2113
-
-
Harmer, S.L.1
Hogenesch, J.B.2
Straume, M.3
Chang, H.S.4
Han, B.5
Zhu, T.6
Wang, X.7
Kreps, J.A.8
Kay, S.A.9
-
21
-
-
33644813858
-
Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis
-
Harmer, S.L., and Kay, S.A. (2005). Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17: 1926-1940.
-
(2005)
Plant Cell
, vol.17
, pp. 1926-1940
-
-
Harmer, S.L.1
Kay, S.A.2
-
22
-
-
84886953405
-
Photosynthetic entrainment of the Arabidopsis thaliana circadian clock
-
Haydon, M.J., Mielczarek, O., Robertson, F.C., Hubbard, K.E., and Webb, A.A. (2013). Photosynthetic entrainment of the Arabidopsis thaliana circadian clock. Nature 502: 689-692.
-
(2013)
Nature
, vol.502
, pp. 689-692
-
-
Haydon, M.J.1
Mielczarek, O.2
Robertson, F.C.3
Hubbard, K.E.4
Webb, A.A.5
-
23
-
-
22544468054
-
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms
-
Hazen, S.P., Schultz, T.F., Pruneda-Paz, J.L., Borevitz, J.O., Ecker, J.R., and Kay, S.A. (2005). LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc. Natl. Acad. Sci. USA 102: 10387-10392.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 10387-10392
-
-
Hazen, S.P.1
Schultz, T.F.2
Pruneda-Paz, J.L.3
Borevitz, J.O.4
Ecker, J.R.5
Kay, S.A.6
-
24
-
-
79151483227
-
LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock
-
Helfer, A., Nusinow, D.A., Chow, B.Y., Gehrke, A.R., Bulyk, M.L., and Kay, S.A. (2011). LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr. Biol. 21: 126-133.
-
(2011)
Curr. Biol
, vol.21
, pp. 126-133
-
-
Helfer, A.1
Nusinow, D.A.2
Chow, B.Y.3
Gehrke, A.R.4
Bulyk, M.L.5
Kay, S.A.6
-
25
-
-
84859043500
-
EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock
-
Herrero, E., et al. (2012). EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock. Plant Cell 24: 428-443.
-
(2012)
Plant Cell
, vol.24
, pp. 428-443
-
-
Herrero, E.1
-
26
-
-
84879065464
-
Accurate timekeeping is controlled by a cycling activator in Arabidopsis
-
Hsu, P.Y., Devisetty, U.K., and Harmer, S.L. (2013). Accurate timekeeping is controlled by a cycling activator in Arabidopsis. eLife 2: e00473.
-
(2013)
eLife
, vol.2
-
-
Hsu, P.Y.1
Devisetty, U.K.2
Harmer, S.L.3
-
27
-
-
84897418780
-
Wheels within wheels: The plant circadian system
-
Hsu, P.Y., and Harmer, S.L. (2014). Wheels within wheels: the plant circadian system. Trends Plant Sci. 19: 240-249.
-
(2014)
Trends Plant Sci
, vol.19
, pp. 240-249
-
-
Hsu, P.Y.1
Harmer, S.L.2
-
28
-
-
84859508042
-
Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator
-
Huang, W., Pérez-García, P., Pokhilko, A., Millar, A.J., Antoshechkin, I., Riechmann, J.L., and Mas, P. (2012). Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator. Science 336: 75-79.
-
(2012)
Science
, vol.336
, pp. 75-79
-
-
Huang, W.1
Pérez-García, P.2
Pokhilko, A.3
Millar, A.J.4
Antoshechkin, I.5
Riechmann, J.L.6
Mas, P.7
-
29
-
-
84914140231
-
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential
-
Hurley, J.M., et al. (2014). Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proc. Natl. Acad. Sci. USA 111: 16995-17002.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 16995-17002
-
-
Hurley, J.M.1
-
30
-
-
15744376084
-
Molecular dissection of the promoter of the light-induced and circadian-controlled APRR9 gene encoding a clockassociated component of Arabidopsis thaliana
-
Ito, S., Nakamichi, N., Matsushika, A., Fujimori, T., Yamashino, T., and Mizuno, T. (2005). Molecular dissection of the promoter of the light-induced and circadian-controlled APRR9 gene encoding a clockassociated component of Arabidopsis thaliana. Biosci. Biotechnol. Biochem. 69: 382-390.
-
(2005)
Biosci. Biotechnol. Biochem
, vol.69
, pp. 382-390
-
-
Ito, S.1
Nakamichi, N.2
Matsushika, A.3
Fujimori, T.4
Yamashino, T.5
Mizuno, T.6
-
31
-
-
35348856969
-
Targeted degradation of PSEUDO-RESPONSE REGULATOR5 by an SCFZTL complex regulates clock function and photomorphogenesis in Arabidopsis thaliana
-
Kiba, T., Henriques, R., Sakakibara, H., and Chua, N.H. (2007). Targeted degradation of PSEUDO-RESPONSE REGULATOR5 by an SCFZTL complex regulates clock function and photomorphogenesis in Arabidopsis thaliana. Plant Cell 19: 2516-2530.
-
(2007)
Plant Cell
, vol.19
, pp. 2516-2530
-
-
Kiba, T.1
Henriques, R.2
Sakakibara, H.3
Chua, N.H.4
-
32
-
-
77957739456
-
Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis mesophyll protoplasts
-
Kim, J., and Somers, D.E. (2010). Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis mesophyll protoplasts. Plant Physiol. 154: 611-621.
-
(2010)
Plant Physiol
, vol.154
, pp. 611-621
-
-
Kim, J.1
Somers, D.E.2
-
33
-
-
55849139827
-
Testing time: Can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis? J
-
Knowles, S.M., Lu, S.X., and Tobin, E.M. (2008). Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis? J. Biol. Rhythms 23: 463-471.
-
(2008)
Biol. Rhythms
, vol.23
, pp. 463-471
-
-
Knowles, S.M.1
Lu, S.X.2
Tobin, E.M.3
-
34
-
-
84867667011
-
Transcriptional architecture and chromatin landscape of the core circadian clock in mammals
-
Koike, N., Yoo, S.H., Huang, H.C., Kumar, V., Lee, C., Kim, T.K., and Takahashi, J.S. (2012). Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science 338: 349-354.
-
(2012)
Science
, vol.338
, pp. 349-354
-
-
Koike, N.1
Yoo, S.H.2
Huang, H.C.3
Kumar, V.4
Lee, C.5
Kim, T.K.6
Takahashi, J.S.7
-
35
-
-
84909595110
-
HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock
-
Kolmos, E., Chow, B.Y., Pruneda-Paz, J.L., and Kay, S.A. (2014). HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock. Proc. Natl. Acad. Sci. USA 111: 16172-16177.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 16172-16177
-
-
Kolmos, E.1
Chow, B.Y.2
Pruneda-Paz, J.L.3
Kay, S.A.4
-
36
-
-
0142060793
-
The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis
-
Kuno, N., Møller, S.G., Shinomura, T., Xu, X., Chua, N.H., and Furuya, M. (2003). The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis. Plant Cell 15: 2476-2488.
-
(2003)
Plant Cell
, vol.15
, pp. 2476-2488
-
-
Kuno, N.1
Møller, S.G.2
Shinomura, T.3
Xu, X.4
Chua, N.H.5
Furuya, M.6
-
37
-
-
84867644429
-
CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses
-
Lai, A.G., Doherty, C.J., Mueller-Roeber, B., Kay, S.A., Schippers, J.H., and Dijkwel, P.P. (2012). CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses. Proc. Natl. Acad. Sci. USA 109: 17129-17134.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 17129-17134
-
-
Lai, A.G.1
Doherty, C.J.2
Mueller-Roeber, B.3
Kay, S.A.4
Schippers, J.H.5
Dijkwel, P.P.6
-
38
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
39
-
-
80052228191
-
Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock
-
Lau, O.S., Huang, X., Charron, J.B., Lee, J.H., Li, G., and Deng, X.W. (2011). Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock. Mol. Cell 43: 703-712.
-
(2011)
Mol. Cell
, vol.43
, pp. 703-712
-
-
Lau, O.S.1
Huang, X.2
Charron, J.B.3
Lee, J.H.4
Li, G.5
Deng, X.W.6
-
40
-
-
77953175949
-
DREB2C interacts with ABF2, a bZIP protein regulating abscisic acid-responsive gene expression, and its overexpression affects abscisic acid sensitivity
-
Lee, S.J., Kang, J.Y., Park, H.J., Kim, M.D., Bae, M.S., Choi, H.I., and Kim, S.Y. (2010). DREB2C interacts with ABF2, a bZIP protein regulating abscisic acid-responsive gene expression, and its overexpression affects abscisic acid sensitivity. Plant Physiol. 153: 716-727.
-
(2010)
Plant Physiol
, vol.153
, pp. 716-727
-
-
Lee, S.J.1
Kang, J.Y.2
Park, H.J.3
Kim, M.D.4
Bae, M.S.5
Choi, H.I.6
Kim, S.Y.7
-
41
-
-
85027917365
-
Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis
-
Li, G., et al. (2011). Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Nat. Cell Biol. 13: 616-622.
-
(2011)
Nat. Cell Biol
, vol.13
, pp. 616-622
-
-
Li, G.1
-
42
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., and Durbin, R.; 1000 Genome Project Data Processing Subgroup (2009). The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
43
-
-
34548292424
-
Over-expression of the Arabidopsis DRE/CRT-binding transcription factor DREB2C enhances thermotolerance
-
Lim, C.J., Hwang, J.E., Chen, H., Hong, J.K., Yang, K.A., Choi, M.S., Lee, K.O., Chung, W.S., Lee, S.Y., and Lim, C.O. (2007). Over-expression of the Arabidopsis DRE/CRT-binding transcription factor DREB2C enhances thermotolerance. Biochem. Biophys. Res. Commun. 362: 431-436.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.362
, pp. 431-436
-
-
Lim, C.J.1
Hwang, J.E.2
Chen, H.3
Hong, J.K.4
Yang, K.A.5
Choi, M.S.6
Lee, K.O.7
Chung, W.S.8
Lee, S.Y.9
Lim, C.O.10
-
44
-
-
0032144961
-
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis
-
Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., and Shinozaki, K. (1998). Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391-1406.
-
(1998)
Plant Cell
, vol.10
, pp. 1391-1406
-
-
Liu, Q.1
Kasuga, M.2
Sakuma, Y.3
Abe, H.4
Miura, S.5
Yamaguchi-Shinozaki, K.6
Shinozaki, K.7
-
45
-
-
84884909996
-
Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7
-
Liu, T., Carlsson, J., Takeuchi, T., Newton, L., and Farré, E.M. (2013). Direct regulation of abiotic responses by the Arabidopsis circadian clock component PRR7. Plant J. 76: 101-114.
-
(2013)
Plant J
, vol.76
, pp. 101-114
-
-
Liu, T.1
Carlsson, J.2
Takeuchi, T.3
Newton, L.4
Farré, E.M.5
-
46
-
-
84953289948
-
A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis
-
Liu, T.L., Newton, L., Liu, M.J., Shiu, S.H., and Farré, E.M. (2016). A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis. Plant Physiol. 170: 528-539.
-
(2016)
Plant Physiol
, vol.170
, pp. 528-539
-
-
Liu, T.L.1
Newton, L.2
Liu, M.J.3
Shiu, S.H.4
Farré, E.M.5
-
47
-
-
84928969727
-
Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORTROOT and contributing to fate specification
-
Long, Y., Smet, W., Cruz-Ramírez, A., Castelijns, B., de Jonge, W., Mähönen, A.P., Bouchet, B.P., Perez, G.S., Akhmanova, A., Scheres, B., and Blilou, I. (2015). Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORTROOT and contributing to fate specification. Plant Cell 27: 1185-1199.
-
(2015)
Plant Cell
, vol.27
, pp. 1185-1199
-
-
Long, Y.1
Smet, W.2
Cruz-Ramírez, A.3
Castelijns, B.4
de Jonge, W.5
Mähönen, A.P.6
Bouchet, B.P.7
Perez, G.S.8
Akhmanova, A.9
Scheres, B.10
Blilou, I.11
-
48
-
-
66649134368
-
CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis
-
Lu, S.X., Knowles, S.M., Andronis, C., Ong, M.S., and Tobin, E.M. (2009). CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis. Plant Physiol. 150: 834-843.
-
(2009)
Plant Physiol
, vol.150
, pp. 834-843
-
-
Lu, S.X.1
Knowles, S.M.2
Andronis, C.3
Ong, M.S.4
Tobin, E.M.5
-
49
-
-
79958117256
-
MEME-ChIP: Motif analysis of large DNA datasets
-
Machanick, P., and Bailey, T.L. (2011). MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics 27: 1696-1697.
-
(2011)
Bioinformatics
, vol.27
, pp. 1696-1697
-
-
Machanick, P.1
Bailey, T.L.2
-
50
-
-
84890026764
-
Circadian control of global gene expression by the cyanobacterial master regulator RpaA
-
Markson, J.S., Piechura, J.R., Puszynska, A.M., and O'Shea, E.K. (2013). Circadian control of global gene expression by the cyanobacterial master regulator RpaA. Cell 155: 1396-1408.
-
(2013)
Cell
, vol.155
, pp. 1396-1408
-
-
Markson, J.S.1
Piechura, J.R.2
Puszynska, A.M.3
O'Shea, E.K.4
-
51
-
-
51249110324
-
AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis
-
Matsui, K., Umemura, Y., and Ohme-Takagi, M. (2008). AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis. Plant J. 55: 954-967.
-
(2008)
Plant J
, vol.55
, pp. 954-967
-
-
Matsui, K.1
Umemura, Y.2
Ohme-Takagi, M.3
-
52
-
-
0033771646
-
Circadian waves of expression of the APRR1/TOC1 family of pseudoresponse regulators in Arabidopsis thaliana: Insight into the plant circadian clock
-
Matsushika, A., Makino, S., Kojima, M., and Mizuno, T. (2000). Circadian waves of expression of the APRR1/TOC1 family of pseudoresponse regulators in Arabidopsis thaliana: insight into the plant circadian clock. Plant Cell Physiol. 41: 1002-1012.
-
(2000)
Plant Cell Physiol
, vol.41
, pp. 1002-1012
-
-
Matsushika, A.1
Makino, S.2
Kojima, M.3
Mizuno, T.4
-
53
-
-
84891912877
-
Wheels within wheels: New transcriptional feedback loops in the Arabidopsis circadian clock
-
McClung, C.R. (2014). Wheels within wheels: new transcriptional feedback loops in the Arabidopsis circadian clock. F1000Prime Rep. 6: 2.
-
(2014)
F1000Prime Rep
, vol.6
, pp. 2
-
-
McClung, C.R.1
-
54
-
-
40149105297
-
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules
-
Michael, T.P., et al. (2008). Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet. 4: e14.
-
(2008)
PLoS Genet
, vol.4
-
-
Michael, T.P.1
-
55
-
-
0036100299
-
LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis
-
Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.R., Carré, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2: 629-641.
-
(2002)
Dev. Cell
, vol.2
, pp. 629-641
-
-
Mizoguchi, T.1
Wheatley, K.2
Hanzawa, Y.3
Wright, L.4
Mizoguchi, M.5
Song, H.R.6
Carré, I.A.7
Coupland, G.8
-
56
-
-
27744434216
-
Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis
-
Mizoguchi, T., Wright, L., Fujiwara, S., Cremer, F., Lee, K., Onouchi, H., Mouradov, A., Fowler, S., Kamada, H., Putterill, J., and Coupland, G. (2005). Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. Plant Cell 17: 2255-2270.
-
(2005)
Plant Cell
, vol.17
, pp. 2255-2270
-
-
Mizoguchi, T.1
Wright, L.2
Fujiwara, S.3
Cremer, F.4
Lee, K.5
Onouchi, H.6
Mouradov, A.7
Fowler, S.8
Kamada, H.9
Putterill, J.10
Coupland, G.11
-
57
-
-
84899139852
-
Ambient temperature signal feeds into the circadian clock transcriptional circuitry through the EC night-time repressor in Arabidopsis thaliana
-
Mizuno, T., Nomoto, Y., Oka, H., Kitayama, M., Takeuchi, A., Tsubouchi, M., and Yamashino, T. (2014). Ambient temperature signal feeds into the circadian clock transcriptional circuitry through the EC night-time repressor in Arabidopsis thaliana. Plant Cell Physiol. 55: 958-976.
-
(2014)
Plant Cell Physiol
, vol.55
, pp. 958-976
-
-
Mizuno, T.1
Nomoto, Y.2
Oka, H.3
Kitayama, M.4
Takeuchi, A.5
Tsubouchi, M.6
Yamashino, T.7
-
58
-
-
40149093631
-
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
-
Mockler, T.C., Michael, T.P., Priest, H.D., Shen, R., Sullivan, C.M., Givan, S.A., McEntee, C., Kay, S.A., and Chory, J. (2007). The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb. Symp. Quant. Biol. 72: 353-363.
-
(2007)
Cold Spring Harb. Symp. Quant. Biol
, vol.72
, pp. 353-363
-
-
Mockler, T.C.1
Michael, T.P.2
Priest, H.D.3
Shen, R.4
Sullivan, C.M.5
Givan, S.A.6
McEntee, C.7
Kay, S.A.8
Chory, J.9
-
59
-
-
84982358134
-
A revised medium for rapid growth and bio-assays with tobacco tissue culture
-
Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bio-assays with tobacco tissue culture. Physiol. Plant. 15: 473-497.
-
(1962)
Physiol. Plant
, vol.15
, pp. 473-497
-
-
Murashige, T.1
Skoog, F.2
-
60
-
-
84940552331
-
Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis
-
Nagel, D.H., Doherty, C.J., Pruneda-Paz, J.L., Schmitz, R.J., Ecker, J.R., and Kay, S.A. (2015). Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proc. Natl. Acad. Sci. USA 112: E4802-E4810.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E4802-E4810
-
-
Nagel, D.H.1
Doherty, C.J.2
Pruneda-Paz, J.L.3
Schmitz, R.J.4
Ecker, J.R.5
Kay, S.A.6
-
61
-
-
27144474564
-
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
-
Nagpal, P., Ellis, C.M., Weber, H., Ploense, S.E., Barkawi, L.S., Guilfoyle, T.J., Hagen, G., Alonso, J.M., Cohen, J.D., Farmer, E.E., Ecker, J.R., and Reed, J.W. (2005). Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132: 4107-4118.
-
(2005)
Development
, vol.132
, pp. 4107-4118
-
-
Nagpal, P.1
Ellis, C.M.2
Weber, H.3
Ploense, S.E.4
Barkawi, L.S.5
Guilfoyle, T.J.6
Hagen, G.7
Alonso, J.M.8
Cohen, J.D.9
Farmer, E.E.10
Ecker, J.R.11
Reed, J.W.12
-
62
-
-
80054682906
-
Molecular mechanisms underlying the Arabidopsis circadian clock
-
Nakamichi, N. (2011). Molecular mechanisms underlying the Arabidopsis circadian clock. Plant Cell Physiol. 52: 1709-1718.
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 1709-1718
-
-
Nakamichi, N.1
-
63
-
-
1042279795
-
Characterization of plant circadian rhythms by employing Arabidopsis cultured cells with bioluminescence reporters
-
Nakamichi, N., Ito, S., Oyama, T., Yamashino, T., Kondo, T., and Mizuno, T. (2004). Characterization of plant circadian rhythms by employing Arabidopsis cultured cells with bioluminescence reporters. Plant Cell Physiol. 45: 57-67.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 57-67
-
-
Nakamichi, N.1
Ito, S.2
Oyama, T.3
Yamashino, T.4
Kondo, T.5
Mizuno, T.6
-
64
-
-
77952919484
-
PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock
-
Nakamichi, N., Kiba, T., Henriques, R.,Mizuno, T., Chua, N.H., and Sakakibara, H. (2010). PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell 22: 594-605.
-
(2010)
Plant Cell
, vol.22
, pp. 594-605
-
-
Nakamichi, N.1
Kiba, T.2
Henriques, R.3
Mizuno, T.4
Chua, N.H.5
Sakakibara, H.6
-
65
-
-
84867656050
-
Transcriptional repressor PRR5 directly regulates clock-output pathways
-
Nakamichi, N., Kiba, T., Kamioka, M., Suzuki, T., Yamashino, T., Higashiyama, T., Sakakibara, H., and Mizuno, T. (2012). Transcriptional repressor PRR5 directly regulates clock-output pathways. Proc. Natl. Acad. Sci. USA 109: 17123-17128.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 17123-17128
-
-
Nakamichi, N.1
Kiba, T.2
Kamioka, M.3
Suzuki, T.4
Yamashino, T.5
Higashiyama, T.6
Sakakibara, H.7
Mizuno, T.8
-
66
-
-
20444398523
-
PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana
-
Nakamichi, N., Kita, M., Ito, S., Yamashino, T., and Mizuno, T. (2005). PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana. Plant Cell Physiol. 46: 686-698.
-
(2005)
Plant Cell Physiol
, vol.46
, pp. 686-698
-
-
Nakamichi, N.1
Kita, M.2
Ito, S.3
Yamashino, T.4
Mizuno, T.5
-
67
-
-
34547681430
-
Genetic linkages of the circadian clock-associated genes, TOC1, CCA1 and LHY, in the photoperiodic control of flowering time in Arabidopsis thaliana
-
Niwa, Y., Ito, S., Nakamichi, N., Mizoguchi, T., Niinuma, K., Yamashino, T., and Mizuno, T. (2007). Genetic linkages of the circadian clock-associated genes, TOC1, CCA1 and LHY, in the photoperiodic control of flowering time in Arabidopsis thaliana. Plant Cell Physiol. 48: 925-937.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 925-937
-
-
Niwa, Y.1
Ito, S.2
Nakamichi, N.3
Mizoguchi, T.4
Niinuma, K.5
Yamashino, T.6
Mizuno, T.7
-
68
-
-
79960621365
-
The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth
-
Nusinow, D.A., Helfer, A., Hamilton, E.E., King, J.J., Imaizumi, T., Schultz, T.F., Farré, E.M., and Kay, S.A. (2011). The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475: 398-402.
-
(2011)
Nature
, vol.475
, pp. 398-402
-
-
Nusinow, D.A.1
Helfer, A.2
Hamilton, E.E.3
King, J.J.4
Imaizumi, T.5
Schultz, T.F.6
Farré, E.M.7
Kay, S.A.8
-
69
-
-
26044440193
-
PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock
-
Onai, K., and Ishiura, M. (2005). PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock. Genes Cells 10: 963-972.
-
(2005)
Genes Cells
, vol.10
, pp. 963-972
-
-
Onai, K.1
Ishiura, M.2
-
70
-
-
34548355182
-
A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock
-
Perales, M., and Más, P. (2007). A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock. Plant Cell 19: 2111-2123.
-
(2007)
Plant Cell
, vol.19
, pp. 2111-2123
-
-
Perales, M.1
Más, P.2
-
71
-
-
84857952188
-
The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops
-
Pokhilko, A., Fernández, A.P., Edwards, K.D., Southern, M.M., Halliday, K.J., and Millar, A.J. (2012). The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops. Mol. Syst. Biol. 8: 574.
-
(2012)
Mol. Syst. Biol
, vol.8
, pp. 574
-
-
Pokhilko, A.1
Fernández, A.P.2
Edwards, K.D.3
Southern, M.M.4
Halliday, K.J.5
Millar, A.J.6
-
72
-
-
62449114708
-
A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock
-
Pruneda-Paz, J.L., Breton, G., Para, A., and Kay, S.A. (2009). A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science 323: 1481-1485.
-
(2009)
Science
, vol.323
, pp. 1481-1485
-
-
Pruneda-Paz, J.L.1
Breton, G.2
Para, A.3
Kay, S.A.4
-
73
-
-
79953730633
-
REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock
-
Rawat, R., Takahashi, N., Hsu, P.Y., Jones, M.A., Schwartz, J., Salemi, M.R., Phinney, B.S., and Harmer, S.L. (2011). REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock. PLoS Genet. 7: e1001350.
-
(2011)
PLoS Genet
, vol.7
-
-
Rawat, R.1
Takahashi, N.2
Hsu, P.Y.3
Jones, M.A.4
Schwartz, J.5
Salemi, M.R.6
Phinney, B.S.7
Harmer, S.L.8
-
74
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M.D., McCarthy, D.J., and Smyth, G.K. (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
75
-
-
84880391363
-
LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator
-
Rugnone, M.L., Faigón Soverna, A., Sanchez, S.E., Schlaen, R.G., Hernando, C.E., Seymour, D.K., Mancini, E., Chernomoretz, A., Weigel, D., Más, P., and Yanovsky, M.J. (2013). LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Proc. Natl. Acad. Sci. USA 110: 12120-12125.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 12120-12125
-
-
Rugnone, M.L.1
Faigón Soverna, A.2
Sanchez, S.E.3
Schlaen, R.G.4
Hernando, C.E.5
Seymour, D.K.6
Mancini, E.7
Chernomoretz, A.8
Weigel, D.9
Más, P.10
Yanovsky, M.J.11
-
76
-
-
78149282260
-
A methyl transferase links the circadian clock to the regulation of alternative splicing
-
Sanchez, S.E., et al. (2010). A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 468: 112-116.
-
(2010)
Nature
, vol.468
, pp. 112-116
-
-
Sanchez, S.E.1
-
77
-
-
0036857414
-
Aberrant expression of the Arabidopsis circadian-regulated APRR5 gene belonging to the APRR1/TOC1 quintet results in early flowering and hypersensitiveness to light in early photomorphogenesis
-
Sato, E., Nakamichi, N., Yamashino, T., and Mizuno, T. (2002). Aberrant expression of the Arabidopsis circadian-regulated APRR5 gene belonging to the APRR1/TOC1 quintet results in early flowering and hypersensitiveness to light in early photomorphogenesis. Plant Cell Physiol. 43: 1374-1385.
-
(2002)
Plant Cell Physiol
, vol.43
, pp. 1374-1385
-
-
Sato, E.1
Nakamichi, N.2
Yamashino, T.3
Mizuno, T.4
-
78
-
-
0026525384
-
DNA binding site preferences and transcriptional activation properties of the Arabidopsis transcription factor GBF1
-
Schindler, U., Terzaghi, W., Beckmann, H., Kadesch, T., and Cashmore, A.R. (1992). DNA binding site preferences and transcriptional activation properties of the Arabidopsis transcription factor GBF1. EMBO J. 11: 1275-1289.
-
(1992)
EMBO J
, vol.11
, pp. 1275-1289
-
-
Schindler, U.1
Terzaghi, W.2
Beckmann, H.3
Kadesch, T.4
Cashmore, A.R.5
-
79
-
-
84922875418
-
Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature
-
Seaton, D.D., Smith, R.W., Song, Y.H., MacGregor, D.R., Stewart, K., Steel, G., Foreman, J., Penfield, S., Imaizumi, T., Millar, A.J., and Halliday, K.J. (2015). Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature. Mol. Syst. Biol. 11: 776.
-
(2015)
Mol. Syst. Biol
, vol.11
, pp. 776
-
-
Seaton, D.D.1
Smith, R.W.2
Song, Y.H.3
MacGregor, D.R.4
Stewart, K.5
Steel, G.6
Foreman, J.7
Penfield, S.8
Imaizumi, T.9
Millar, A.J.10
Halliday, K.J.11
-
80
-
-
77956144334
-
Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex
-
Smith, K.M., et al. (2010). Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex. Eukaryot. Cell 9: 1549-1556.
-
(2010)
Eukaryot. Cell
, vol.9
, pp. 1549-1556
-
-
Smith, K.M.1
-
81
-
-
84879642650
-
BHLH transcription factors that facilitate K+ uptake during stomatal opening are repressed by abscisic acid through phosphorylation
-
Takahashi, Y., Ebisu, Y., Kinoshita, T., Doi, M., Okuma, E., Murata, Y., and Shimazaki, K. (2013). bHLH transcription factors that facilitate K+ uptake during stomatal opening are repressed by abscisic acid through phosphorylation. Sci. Signal. 6: ra48.
-
(2013)
Sci. Signal
, vol.6
-
-
Takahashi, Y.1
Ebisu, Y.2
Kinoshita, T.3
Doi, M.4
Okuma, E.5
Murata, Y.6
Shimazaki, K.7
-
82
-
-
33745422063
-
The GRAS protein SCL13 is a positive regulator of phytochromedependent red light signaling, but can also modulate phytochrome A responses
-
Torres-Galea, P., Huang, L.F., Chua, N.H., and Bolle, C. (2006). The GRAS protein SCL13 is a positive regulator of phytochromedependent red light signaling, but can also modulate phytochrome A responses. Mol. Genet. Genomics 276: 13-30.
-
(2006)
Mol. Genet. Genomics
, vol.276
, pp. 13-30
-
-
Torres-Galea, P.1
Huang, L.F.2
Chua, N.H.3
Bolle, C.4
-
83
-
-
4544236638
-
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter
-
Tran, L.S., Nakashima, K., Sakuma, Y., Simpson, S.D., Fujita, Y., Maruyama, K., Fujita, M., Seki, M., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2004). Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell 16: 2481-2498.
-
(2004)
Plant Cell
, vol.16
, pp. 2481-2498
-
-
Tran, L.S.1
Nakashima, K.2
Sakuma, Y.3
Simpson, S.D.4
Fujita, Y.5
Maruyama, K.6
Fujita, M.7
Seki, M.8
Shinozaki, K.9
Yamaguchi-Shinozaki, K.10
-
84
-
-
78149489254
-
Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root
-
Tsukagoshi, H., Busch, W., and Benfey, P.N. (2010). Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell 143: 606-616.
-
(2010)
Cell
, vol.143
, pp. 606-616
-
-
Tsukagoshi, H.1
Busch, W.2
Benfey, P.N.3
-
85
-
-
84871630579
-
Molecular mechanisms of circadian rhythm in Lotus japonicus and Arabidopsis thaliana are sufficiently compatible to regulate heterologous core clock genes robustly
-
Ueoka-Nakanishi, H., Yamashino, T., Ishida, K., Kamioka, M., Nakamichi, N., and Mizuno, T. (2012). Molecular mechanisms of circadian rhythm in Lotus japonicus and Arabidopsis thaliana are sufficiently compatible to regulate heterologous core clock genes robustly. Biosci. Biotechnol. Biochem. 76: 2332-2334.
-
(2012)
Biosci. Biotechnol. Biochem
, vol.76
, pp. 2332-2334
-
-
Ueoka-Nakanishi, H.1
Yamashino, T.2
Ishida, K.3
Kamioka, M.4
Nakamichi, N.5
Mizuno, T.6
-
86
-
-
75649084550
-
Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins
-
Wang, H., Zhu, Y., Fujioka, S., Asami, T., Li, J., and Li, J. (2009). Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins. Plant Cell 21: 3781-3791.
-
(2009)
Plant Cell
, vol.21
, pp. 3781-3791
-
-
Wang, H.1
Zhu, Y.2
Fujioka, S.3
Asami, T.4
Li, J.5
Li, J.6
-
87
-
-
84872177734
-
Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription
-
Wang, L., Kim, J., and Somers, D.E. (2013). Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription. Proc. Natl. Acad. Sci. USA 110: 761-766.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 761-766
-
-
Wang, L.1
Kim, J.2
Somers, D.E.3
-
88
-
-
79551662808
-
Timing of plant immune responses by a central circadian regulator
-
Wang, W., Barnaby, J.Y., Tada, Y., Li, H., Tör, M., Caldelari, D., Lee, D.U., Fu, X.D., and Dong, X. (2011). Timing of plant immune responses by a central circadian regulator. Nature 470: 110-114.
-
(2011)
Nature
, vol.470
, pp. 110-114
-
-
Wang, W.1
Barnaby, J.Y.2
Tada, Y.3
Li, H.4
Tör, M.5
Caldelari, D.6
Lee, D.U.7
Fu, X.D.8
Dong, X.9
-
89
-
-
0031128444
-
A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene
-
Wang, Z.Y., Kenigsbuch, D., Sun, L., Harel, E., Ong, M.S., and Tobin, E.M. (1997). A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell 9: 491-507.
-
(1997)
Plant Cell
, vol.9
, pp. 491-507
-
-
Wang, Z.Y.1
Kenigsbuch, D.2
Sun, L.3
Harel, E.4
Ong, M.S.5
Tobin, E.M.6
-
90
-
-
0032568796
-
Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression
-
Wang, Z.Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93: 1207-1217.
-
(1998)
Cell
, vol.93
, pp. 1207-1217
-
-
Wang, Z.Y.1
Tobin, E.M.2
-
91
-
-
84907351550
-
LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator
-
Xie, Q., et al. (2014). LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator. Plant Cell 26: 2843-2857.
-
(2014)
Plant Cell
, vol.26
, pp. 2843-2857
-
-
Xie, Q.1
-
92
-
-
57749206386
-
Involvement of Arabidopsis clock-associated pseudo-response regulators in diurnal oscillations of gene expression in the presence of environmental time cues
-
Yamashino, T., Ito, S., Niwa, Y., Kunihiro, A., Nakamichi, N., and Mizuno, T. (2008). Involvement of Arabidopsis clock-associated pseudo-response regulators in diurnal oscillations of gene expression in the presence of environmental time cues. Plant Cell Physiol. 49: 1839-1850.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1839-1850
-
-
Yamashino, T.1
Ito, S.2
Niwa, Y.3
Kunihiro, A.4
Nakamichi, N.5
Mizuno, T.6
-
93
-
-
84870617760
-
MYBL2 is a substrate of GSK3-like kinase BIN2 and acts as a corepressor of BES1 in brassinosteroid signaling pathway in Arabidopsis
-
Ye, H., Li, L., Guo, H., and Yin, Y. (2012). MYBL2 is a substrate of GSK3-like kinase BIN2 and acts as a corepressor of BES1 in brassinosteroid signaling pathway in Arabidopsis. Proc. Natl. Acad. Sci. USA 109: 20142-20147.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 20142-20147
-
-
Ye, H.1
Li, L.2
Guo, H.3
Yin, Y.4
-
94
-
-
34447099171
-
Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
-
Yoo, S.D., Cho, Y.H., and Sheen, J. (2007). Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2: 1565-1572.
-
(2007)
Nat. Protoc
, vol.2
, pp. 1565-1572
-
-
Yoo, S.D.1
Cho, Y.H.2
Sheen, J.3
-
95
-
-
60849095555
-
Nonparametric entrainment of the in vitro circadian phosphorylation rhythm of cyanobacterial KaiC by temperature cycle
-
Yoshida, T., Murayama, Y., Ito, H., Kageyama, H., and Kondo, T. (2009). Nonparametric entrainment of the in vitro circadian phosphorylation rhythm of cyanobacterial KaiC by temperature cycle. Proc. Natl. Acad. Sci. USA 106: 1648-1653.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1648-1653
-
-
Yoshida, T.1
Murayama, Y.2
Ito, H.3
Kageyama, H.4
Kondo, T.5
-
96
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W., and Liu, X.S. (2008). Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
97
-
-
77951947707
-
ChIPpeakAnno: A Bioconductor package to annotate ChIP-seq and ChIP-chip data
-
Zhu, L.J., Gazin, C., Lawson, N.D., Pagès, H., Lin, S.M., Lapointe, D.S., and Green, M.R. (2010). ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC Bioinformatics 11: 237.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 237
-
-
Zhu, L.J.1
Gazin, C.2
Lawson, N.D.3
Pagès, H.4
Lin, S.M.5
Lapointe, D.S.6
Green, M.R.7
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