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Volumn 10, Issue 12, 2015, Pages

Revised Morning Loops of the Arabidopsis Circadian Clock Based on Analyses of Direct Regulatory Interactions

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; CIRCADIAN CLOCK ASSOCIATED 1 PROTEIN; LATE ELONGATED HYPOCOTYL PROTEIN; PROTEIN MYB; PSEUDO RESPONSE REGULATOR 7; PSEUDO RESPONSE REGULATOR 9; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; DNA BINDING PROTEIN; PROTEIN BINDING; TRANSCRIPTION FACTOR;

EID: 84955577390     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0143943     Document Type: Article
Times cited : (92)

References (33)
  • 3
    • 84859508042 scopus 로고    scopus 로고
    • Mapping the core of the arabidopsis circadian clock defines the network structure of the oscillator
    • PMID: 22403178
    • Huang W, Pérez-García P, Pokhilko A, Millar AJ, Antoshechkin I, Riechmann JL, et al. Mapping the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator. Science. 2012; 336(6077):75-9. doi: 10.1126/science.1219075 PMID: 22403178
    • (2012) Science , vol.336 , Issue.6077 , pp. 75-79
    • Huang, W.1    Pérez-García, P.2    Pokhilko, A.3    Millar, A.J.4    Antoshechkin, I.5    Riechmann, J.L.6
  • 4
    • 84879156583 scopus 로고    scopus 로고
    • Emerging design principles in the arabidopsis circadian clock
    • PMID: 23597453
    • Carré I, Veflingstad SR. Emerging design principles in the Arabidopsis circadian clock. Seminars in Cell & Developmental Biology. 2013; 24(5):393-8. doi: 10.1016/j.semcdb.2013.03.011 PMID: 23597453
    • (2013) Seminars in Cell & Developmental Biology , vol.24 , Issue.5 , pp. 393-398
    • Carré, I.1    Veflingstad, S.R.2
  • 5
    • 0033771646 scopus 로고    scopus 로고
    • Circadian waves of expression of the aprr1/toc1 family of pseudo-response regulators in arabidopsis thaliana: Insight into the plant circadian clock
    • PMID: 11100772
    • Matsushika A, Makino S, Kojima M, Mizuno T. Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock. Plant and Cell Physiology. 2000; 41(9):1002-12. PMID: 11100772
    • (2000) Plant and Cell Physiology , vol.41 , Issue.9 , pp. 1002-1012
    • Matsushika, A.1    Makino, S.2    Kojima, M.3    Mizuno, T.4
  • 6
    • 77952919484 scopus 로고    scopus 로고
    • Pseudo-response regulators 9,7 and 5 are transcriptional repressors in the arabidopsis circadian clock
    • PMID: 20233950
    • Nakamichi N, Kiba T, Henriques R, Mizuno T, Chua NH, Sakakibara H. PSEUDO-RESPONSE REGULATORS 9,7 and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell. 2010; 22:594-605. doi: 10.1105/tpc.109.072892 PMID: 20233950
    • (2010) Plant Cell , vol.22 , pp. 594-605
    • Nakamichi, N.1    Kiba, T.2    Henriques, R.3    Mizuno, T.4    Chua, N.H.5    Sakakibara, H.6
  • 7
    • 79955007772 scopus 로고    scopus 로고
    • Functional implication of the myb transcription factor rve8/lcl5 in the circadian control of histone acetylation
    • PMID 21205033
    • Farinas B, Mas P. Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation. Plant Journal. 2011; 66(2):318-29. doi: 10.1111/j.1365-313X.2011. 04484.x PMID: 21205033
    • (2011) Plant Journal , vol.66 , Issue.2 , pp. 318-329
    • Farinas, B.1    Mas, P.2
  • 8
    • 79953730633 scopus 로고    scopus 로고
    • Reveille8 and pseudoreponse regulator5 form a negative feedback loop within the arabidopsis circadian clock
    • PMID: 21483796
    • Rawat R, Takahashi N, Hsu PY, Jones MA, Schwartz J, Salemi MR, et al. REVEILLE8 and PSEUDOREPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock. PLoS Genet. 2011; 7(3):e1001350. doi: 10.1371/journal.pgen.1001350 PMID: 21483796
    • (2011) PLoS Genet , vol.7 , Issue.3 , pp. e1001350
    • Rawat, R.1    Takahashi, N.2    Hsu, P.Y.3    Jones, M.A.4    Schwartz, J.5    Salemi, M.R.6
  • 9
    • 84879065464 scopus 로고    scopus 로고
    • Accurate timekeeping is controlled by a cycling activator in arabidopsis
    • Hsu PY, Devisetty UK, Harmer SL, Chory J. Accurate timekeeping is controlled by a cycling activator in Arabidopsis. eLife. 2013; 2
    • (2013) ELife , vol.2
    • Hsu, P.Y.1    Devisetty, U.K.2    Harmer, S.L.3    Chory, J.4
  • 10
    • 79953084035 scopus 로고    scopus 로고
    • Light-regulated wd1 and pseudo-response regulator9 form a positive feedback regulatory loop in the arabidopsis circadian clock
    • PMID: 21357491
    • Wang Y, Wu J-F, Nakamichi N, Sakakibara H, Nam H-G, Wu S-H. LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 Form a Positive Feedback Regulatory Loop in the Arabidopsis Circadian Clock. Plant Cell. 2011; 23(2):486-98. doi: 10.1105/tpc.110.081661 PMID: 21357491
    • (2011) Plant Cell , vol.23 , Issue.2 , pp. 486-498
    • Wang, Y.1    Wu, J.-F.2    Nakamichi, N.3    Sakakibara, H.4    Nam, H.-G.5    Wu, S.-H.6
  • 12
    • 34548355182 scopus 로고    scopus 로고
    • A functional link between rhythmic changes in chromatin structure and the arabidopsis biological clock
    • PMID: 17616736
    • Perales M, Mas P. A Functional Link between Rhythmic Changes in Chromatin Structure and the Arabidopsis Biological Clock. Plant Cell. 2007; 19(7):2111-23. PMID: 17616736
    • (2007) Plant Cell , vol.19 , Issue.7 , pp. 2111-2123
    • Perales, M.1    Mas, P.2
  • 13
    • 58249105076 scopus 로고    scopus 로고
    • Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
    • PMID: 19029881
    • Ni Z, Kim E-D, Ha M, Lackey E, Liu J, Zhang Y, et al. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature. 2009; 457(7227):327-31. doi: 10.1038/nature07523 PMID: 19029881
    • (2009) Nature , vol.457 , Issue.7227 , pp. 327-331
    • Ni, Z.1    Kim, E.-D.2    Ha, M.3    Lackey, E.4    Liu, J.5    Zhang, Y.6
  • 14
    • 78649714225 scopus 로고    scopus 로고
    • The functional interplay between protein kinase ck2 and cca1 transcriptional activity is essential for clock temperature compensation in arabidopsis
    • PMID: 21079791
    • Portolés S, Más P. The Functional Interplay between Protein Kinase CK2 and CCA1 Transcriptional Activity Is Essential for Clock Temperature Compensation in Arabidopsis. PLoS Genet. 2010; 6(11): e1001201. doi: 10.1371/journal.pgen.1001201 PMID: 21079791
    • (2010) PLoS Genet , vol.6 , Issue.11 , pp. e1001201
    • Portolés, S.1    Más, P.2
  • 15
    • 85027917365 scopus 로고    scopus 로고
    • Coordinated transcriptional regulation underlying the circadian clock in arabidopsis
    • PMID: 21499259
    • Li G, Siddiqui H, Teng Y, Lin R, Wan X-y, Li J, et al. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Nat Cell Biol. 2011; 13(5):616-22. doi: 10.1038/ncb2219 PMID: 21499259
    • (2011) Nat Cell Biol , vol.13 , Issue.5 , pp. 616-622
    • Li, G.1    Siddiqui, H.2    Teng, Y.3    Lin, R.4    Wan, X.-Y.5    Li, J.6
  • 16
    • 84863012419 scopus 로고    scopus 로고
    • Cca1 and elf3 interact in the control of hypocotyl length and flowering time in arabidopsis
    • PMID 22190341
    • Lu SX, Webb CJ, Knowles SM, Kim SHJ, Wang Z, Tobin EM. CCA1 and ELF3 Interact in the Control of Hypocotyl Length and Flowering Time in Arabidopsis. Plant Physiology. 2012; 158(2):1079-88. doi: 10. 1104/pp.111.189670 PMID: 22190341
    • (2012) Plant Physiology , vol.158 , Issue.2 , pp. 1079-1088
    • Lu, S.X.1    Webb, C.J.2    Knowles, S.M.3    Kim, S.H.J.4    Wang, Z.5    Tobin, E.M.6
  • 18
    • 66649133364 scopus 로고    scopus 로고
    • Posttranslational regulation of circadian clock associated1 in the circadian oscillator of arabidopsis
    • PMID: 19339503
    • Yakir E, Hilman D, Kron I, Hassidim M, Melamed-Book N, Green RM. Posttranslational Regulation of CIRCADIAN CLOCK ASSOCIATED1 in the Circadian Oscillator of Arabidopsis. Plant Physiol. 2009; 150:844-57. doi: 10.1104/pp.109.137414 PMID: 19339503
    • (2009) Plant Physiol , vol.150 , pp. 844-857
    • Yakir, E.1    Hilman, D.2    Kron, I.3    Hassidim, M.4    Melamed-Book, N.5    Green, R.M.6
  • 19
    • 0036100299 scopus 로고    scopus 로고
    • Lhy and cca1 are partially redundant genes required to maintain circadian rhythms in arabidopsis
    • PMID: 12015970
    • Mizoguchi T, Wheatley K, Hanzawa Y, Wright L, Mizoguchi M, Song HR, et al. LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Developmental Cell. 2002; 2(5):629-41. PMID: 12015970
    • (2002) Developmental Cell , vol.2 , Issue.5 , pp. 629-641
    • Mizoguchi, T.1    Wheatley, K.2    Hanzawa, Y.3    Wright, L.4    Mizoguchi, M.5    Song, H.R.6
  • 20
    • 0037197943 scopus 로고    scopus 로고
    • Critical role for cca1 and lhy in maintaining circadian rhythmicity in arabidopsis
    • PMID: 12007421
    • Alabadi D, Yanovsky MJ, Mas P, Harmer SL, Kay SA. Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Current Biology. 2002; 12(9):757-61. PMID: 12007421
    • (2002) Current Biology , vol.12 , Issue.9 , pp. 757-761
    • Alabadi, D.1    Yanovsky, M.J.2    Mas, P.3    Harmer, S.L.4    Kay, S.A.5
  • 21
    • 70849110155 scopus 로고    scopus 로고
    • Evolutionarily conserved regulatory motifs in the promoter of the arabidopsis clock gene late elongated hypocotyl
    • PMID: 19789276
    • Spensley M, Kim J-Y, Picot E, Reid J, Ott S, Helliwell C, et al. Evolutionarily Conserved Regulatory Motifs in the Promoter of the Arabidopsis Clock Gene LATE ELONGATED HYPOCOTYL. Plant Cell. 2009; 21:2606-23. doi: 10.1105/tpc.109.069898 PMID: 19789276
    • (2009) Plant Cell , vol.21 , pp. 2606-2623
    • Spensley, M.1    Kim, J.-Y.2    Picot, E.3    Reid, J.4    Ott, S.5    Helliwell, C.6
  • 22
    • 11844289579 scopus 로고    scopus 로고
    • Overlapping and distinct roles of prr7 and prr9 in the arabidopsis clock
    • PMID: 15649364
    • Farré EM, Harmer SL, Harmon FG, Yanovsky MJ, Kay SA. Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis clock. Current Biology. 2005; 15:47-54. PMID: 15649364
    • (2005) Current Biology , vol.15 , pp. 47-54
    • Farré, E.M.1    Harmer, S.L.2    Harmon, F.G.3    Yanovsky, M.J.4    Kay, S.A.5
  • 23
    • 0032568796 scopus 로고    scopus 로고
    • Constitutive expression of the circadian clock associated (cca1) gene disrupts circadian rhythms and suppresses its own expression
    • PMID: 9657153
    • Wang Z-Y, Tobin EM. Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell. 1998; 93:1207-17. PMID: 9657153
    • (1998) Cell , vol.93 , pp. 1207-1217
    • Wang, Z.-Y.1    Tobin, E.M.2
  • 24
    • 0006180620 scopus 로고    scopus 로고
    • The late elongated hypocotyl mutation of arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering
    • PMID: 9657154
    • Schaffer R, Ramsay N, Samach A, Corden S, Putterill J, Carré IA, et al. The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell. 1998; 93:1219-29. PMID: 9657154
    • (1998) Cell , vol.93 , pp. 1219-1229
    • Schaffer, R.1    Ramsay, N.2    Samach, A.3    Corden, S.4    Putterill, J.5    Carré, I.A.6
  • 25
    • 84905455464 scopus 로고    scopus 로고
    • Rethinking transcriptional activation in the arabidopsis circadian clock
    • PMID: 25033214
    • Fogelmark K, Troein C. Rethinking Transcriptional Activation in the Arabidopsis Circadian Clock. PLoS Comput Biol. 2014; 10(7):e1003705. doi: 10.1371/journal.pcbi.1003705 PMID: 25033214
    • (2014) PLoS Comput Biol , vol.10 , Issue.7 , pp. e1003705
    • Fogelmark, K.1    Troein, C.2
  • 26
    • 33846050368 scopus 로고    scopus 로고
    • Experimental validation of a predicted feedback loop in the multi-oscillator clock of arabidopsis thaliana
    • PMID: 17102804
    • Locke J, Kozma-Bognár L, Gould P, B F, Kevei E, Nagy F, et al. Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Molecular Systems Biology. 2006; 2:59. PMID: 17102804
    • (2006) Molecular Systems Biology , vol.2 , pp. 59
    • Locke, J.1    Kozma-Bognár, L.2    Gould, P.B.F.3    Kevei, E.4    Nagy, F.5
  • 27
    • 20444398523 scopus 로고    scopus 로고
    • Pseudo-response regulators prr9, prr7 and prr5, together play essential roles close to the circadian clock of arabidopsis thaliana
    • PMID: 15767265
    • Nakamichi N, Kita M, Ito S, Yamashino T, Mizuno T. PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, Together Play Essential Roles Close to the Circadian Clock of Arabidopsis thaliana. Plant and Cell Physiology. 2005; 46(5):686-98. PMID: 15767265
    • (2005) Plant and Cell Physiology , vol.46 , Issue.5 , pp. 686-698
    • Nakamichi, N.1    Kita, M.2    Ito, S.3    Yamashino, T.4    Mizuno, T.5
  • 28
    • 20444382245 scopus 로고    scopus 로고
    • Pseudo-response regulator 7 and 9 are partially redundant genes esential for the temperature responsiveness of the arabidopsis circadian clock
    • Salome PA, McClung CR. PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes esential for the temperature responsiveness of the Arabidopsis circadian clock. Plant Cell. 2005; 17 (791-803).
    • (2005) Plant Cell , vol.17 , pp. 791-803
    • Salome, P.A.1    McClung, C.R.2
  • 29
    • 55849139827 scopus 로고    scopus 로고
    • Testing time: Can ethanol-induced pulses of proposed oscillator components phase shift rhythms in arabidopsis
    • PMID: 19060255
    • Knowles SM, Lu SX, Tobin EM. Testing Time: Can Ethanol-Induced Pulses of Proposed Oscillator Components Phase Shift Rhythms in Arabidopsis J Biol Rhythms. 2008; 23:463-71. doi: 10.1177/0748730408326749 PMID: 19060255
    • (2008) J Biol Rhythms , vol.23 , pp. 463-471
    • Knowles, S.M.1    Lu, S.X.2    Tobin, E.M.3
  • 30
    • 0037072666 scopus 로고    scopus 로고
    • Dependence on heterochromatic histone h3 methylation patterns on the arabidopsis gene ddm1
    • PMID: 12077425
    • Gendrel A-V, Lippman Z, Yordan C, Colot V, Martienssem RA. Dependence on heterochromatic Histone H3 methylation patterns on the Arabidopsis gene DDM1. Science. 2002; 297:1871-3. PMID: 12077425
    • (2002) Science , vol.297 , pp. 1871-1873
    • Gendrel, A.-V.1    Lippman, Z.2    Yordan, C.3    Colot, V.4    Martienssem, R.A.5
  • 31
    • 0037450767 scopus 로고    scopus 로고
    • Light-regulated translation mediates gated induction of the arabidopsis clock protein lhy
    • PMID: 12574129
    • Kim JY, Song HR, Taylor BL, Carre IA. Light-regulated translation mediates gated induction of the Arabidopsis clock protein LHY. The Embo Journal. 2003; 22(4):935-44. PMID: 12574129
    • (2003) The Embo Journal , vol.22 , Issue.4 , pp. 935-944
    • Kim, J.Y.1    Song, H.R.2    Taylor, B.L.3    Carre, I.A.4
  • 32
    • 33847661809 scopus 로고    scopus 로고
    • Protocol for the fast chromatin immunoprecipitation (chip) method
    • PMID: 17406230
    • Nelson JD, Denisenko O, Bomsztyk K. Protocol for the fast chromatin immunoprecipitation (ChIP) method. Nat Protocols. 2006; 1(1):179-85. PMID: 17406230
    • (2006) Nat Protocols , vol.1 , Issue.1 , pp. 179-185
    • Nelson, J.D.1    Denisenko, O.2    Bomsztyk, K.3
  • 33
    • 40449100030 scopus 로고    scopus 로고
    • Direct multiplexed measurement of gene expression with color-coded probe pairs
    • Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, Dunaway DL, et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotech. 2008; 26(3):317-25.
    • (2008) Nat Biotech , vol.26 , Issue.3 , pp. 317-325
    • Geiss, G.K.1    Bumgarner, R.E.2    Birditt, B.3    Dahl, T.4    Dowidar, N.5    Dunaway, D.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.