-
1
-
-
0016791207
-
Cleavage of DNA in nuclei and chromatin with staphylococcal nuclease
-
Axel R. Cleavage of DNA in nuclei and chromatin with staphylococcal nuclease. Biochemistry 1975, 14:2921-2925.
-
(1975)
Biochemistry
, vol.14
, pp. 2921-2925
-
-
Axel, R.1
-
2
-
-
84872269321
-
Nucleosome-driven transcription factor binding and gene regulation
-
Ballaré C., Castellano G., Gaveglia L., Althammer S., González-Vallinas J., Eyras E., Le Dily F., Zaurin R., Soronellas D., Vicent G.P., Beato M. Nucleosome-driven transcription factor binding and gene regulation. Mol. Cell 2013, 49:67-79.
-
(2013)
Mol. Cell
, vol.49
, pp. 67-79
-
-
Ballaré, C.1
Castellano, G.2
Gaveglia, L.3
Althammer, S.4
González-Vallinas, J.5
Eyras, E.6
Le Dily, F.7
Zaurin, R.8
Soronellas, D.9
Vicent, G.P.10
Beato, M.11
-
3
-
-
84867539729
-
Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain
-
Bargaje R., Alam M.P., Patowary A., Sarkar M., Ali T., Gupta S., Garg M., Singh M., Purkanti R., Scaria V., et al. Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain. Nucleic Acids Res. 2012, 40:8965-8978.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 8965-8978
-
-
Bargaje, R.1
Alam, M.P.2
Patowary, A.3
Sarkar, M.4
Ali, T.5
Gupta, S.6
Garg, M.7
Singh, M.8
Purkanti, R.9
Scaria, V.10
-
4
-
-
84901921616
-
Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers
-
Barozzi I., Simonatto M., Bonifacio S., Yang L., Rohs R., Ghisletti S., Natoli G. Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers. Mol. Cell 2014, 54:844-857.
-
(2014)
Mol. Cell
, vol.54
, pp. 844-857
-
-
Barozzi, I.1
Simonatto, M.2
Bonifacio, S.3
Yang, L.4
Rohs, R.5
Ghisletti, S.6
Natoli, G.7
-
5
-
-
84864041695
-
Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2
-
Bochkis I.M., Schug J., Ye D.Z., Kurinna S., Stratton S.A., Barton M.C., Kaestner K.H. Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2. PLoS Genet. 2012, 8:e1002770.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002770
-
-
Bochkis, I.M.1
Schug, J.2
Ye, D.Z.3
Kurinna, S.4
Stratton, S.A.5
Barton, M.C.6
Kaestner, K.H.7
-
6
-
-
84873512283
-
Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes
-
Caravaca J.M., Donahue G., Becker J.S., He X., Vinson C., Zaret K.S. Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes. Genes Dev. 2013, 27:251-260.
-
(2013)
Genes Dev.
, vol.27
, pp. 251-260
-
-
Caravaca, J.M.1
Donahue, G.2
Becker, J.S.3
He, X.4
Vinson, C.5
Zaret, K.S.6
-
7
-
-
84904261107
-
High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm
-
Carone B.R., Hung J.H., Hainer S.J., Chou M.T., Carone D.M., Weng Z., Fazzio T.G., Rando O.J. High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm. Dev. Cell 2014, 30:11-22.
-
(2014)
Dev. Cell
, vol.30
, pp. 11-22
-
-
Carone, B.R.1
Hung, J.H.2
Hainer, S.J.3
Chou, M.T.4
Carone, D.M.5
Weng, Z.6
Fazzio, T.G.7
Rando, O.J.8
-
8
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
Carroll J.S., Liu X.S., Brodsky A.S., Li W., Meyer C.A., Szary A.J., Eeckhoute J., Shao W., Hestermann E.V., Geistlinger T.R., et al. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell 2005, 122:33-43.
-
(2005)
Cell
, vol.122
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
-
9
-
-
84884691455
-
Regulation of the boundaries of accessible chromatin
-
Chai X., Nagarajan S., Kim K., Lee K., Choi J.K. Regulation of the boundaries of accessible chromatin. PLoS Genet. 2013, 9:e1003778.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003778
-
-
Chai, X.1
Nagarajan, S.2
Kim, K.3
Lee, K.4
Choi, J.K.5
-
10
-
-
0030995542
-
Nucleosome-mediated synergism between transcription factors on the mouse mammary tumor virus promoter
-
Chávez S., Beato M. Nucleosome-mediated synergism between transcription factors on the mouse mammary tumor virus promoter. Proc. Natl. Acad. Sci. USA 1997, 94:2885-2890.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2885-2890
-
-
Chávez, S.1
Beato, M.2
-
11
-
-
0035977054
-
Transcription factor FoxA (HNF3) on a nucleosome at an enhancer complex in liver chromatin
-
Chaya D., Hayamizu T., Bustin M., Zaret K.S. Transcription factor FoxA (HNF3) on a nucleosome at an enhancer complex in liver chromatin. J. Biol. Chem. 2001, 276:44385-44389.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 44385-44389
-
-
Chaya, D.1
Hayamizu, T.2
Bustin, M.3
Zaret, K.S.4
-
12
-
-
0032472365
-
Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome
-
Cirillo L.A., McPherson C.E., Bossard P., Stevens K., Cherian S., Shim E.-Y., Clark K.L., Burley S.K., Zaret K.S. Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome. EMBO J. 1998, 17:244-254.
-
(1998)
EMBO J.
, vol.17
, pp. 244-254
-
-
Cirillo, L.A.1
McPherson, C.E.2
Bossard, P.3
Stevens, K.4
Cherian, S.5
Shim, E.-Y.6
Clark, K.L.7
Burley, S.K.8
Zaret, K.S.9
-
13
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
Cirillo L.A., Lin F.R., Cuesta I., Friedman D., Jarnik M., Zaret K.S. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol. Cell 2002, 9:279-289.
-
(2002)
Mol. Cell
, vol.9
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
14
-
-
0027270989
-
Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
-
Clark K.L., Halay E.D., Lai E., Burley S.K. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5. Nature 1993, 364:412-420.
-
(1993)
Nature
, vol.364
, pp. 412-420
-
-
Clark, K.L.1
Halay, E.D.2
Lai, E.3
Burley, S.K.4
-
15
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton M.P., Cheng A.W., Welstead G.G., Kooistra T., Carey B.W., Steine E.J., Hanna J., Lodato M.A., Frampton G.M., Sharp P.A., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 2010, 107:21931-21936.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
16
-
-
77951915031
-
A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding
-
Floer M., Wang X., Prabhu V., Berrozpe G., Narayan S., Spagna D., Alvarez D., Kendall J., Krasnitz A., Stepansky A., et al. A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding. Cell 2010, 141:407-418.
-
(2010)
Cell
, vol.141
, pp. 407-418
-
-
Floer, M.1
Wang, X.2
Prabhu, V.3
Berrozpe, G.4
Narayan, S.5
Spagna, D.6
Alvarez, D.7
Kendall, J.8
Krasnitz, A.9
Stepansky, A.10
-
17
-
-
84870674869
-
Controls of nucleosome positioning in the human genome
-
Gaffney D.J., McVicker G., Pai A.A., Fondufe-Mittendorf Y.N., Lewellen N., Michelini K., Widom J., Gilad Y., Pritchard J.K. Controls of nucleosome positioning in the human genome. PLoS Genet. 2012, 8:e1003036.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1003036
-
-
Gaffney, D.J.1
McVicker, G.2
Pai, A.A.3
Fondufe-Mittendorf, Y.N.4
Lewellen, N.5
Michelini, K.6
Widom, J.7
Gilad, Y.8
Pritchard, J.K.9
-
18
-
-
0030016336
-
Identification of two DNA-binding sites on the globular domain of histone H5
-
Goytisolo F.A., Gerchman S.E., Yu X., Rees C., Graziano V., Ramakrishnan V., Thomas J.O. Identification of two DNA-binding sites on the globular domain of histone H5. EMBO J. 1996, 15:3421-3429.
-
(1996)
EMBO J.
, vol.15
, pp. 3421-3429
-
-
Goytisolo, F.A.1
Gerchman, S.E.2
Yu, X.3
Rees, C.4
Graziano, V.5
Ramakrishnan, V.6
Thomas, J.O.7
-
19
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman N.D., Hon G.C., Hawkins R.D., Kheradpour P., Stark A., Harp L.F., Ye Z., Lee L.K., Stuart R.K., Ching C.W., et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 2009, 459:108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
20
-
-
77955149398
-
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver
-
Hoffman B.G., Robertson G., Zavaglia B., Beach M., Cullum R., Lee S., Soukhatcheva G., Li L., Wederell E.D., Thiessen N., et al. Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Res. 2010, 20:1037-1051.
-
(2010)
Genome Res.
, vol.20
, pp. 1037-1051
-
-
Hoffman, B.G.1
Robertson, G.2
Zavaglia, B.3
Beach, M.4
Cullum, R.5
Lee, S.6
Soukhatcheva, G.7
Li, L.8
Wederell, E.D.9
Thiessen, N.10
-
21
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
22
-
-
84867371116
-
A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern
-
Hughes A.L., Jin Y., Rando O.J., Struhl K. A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Mol. Cell 2012, 48:5-15.
-
(2012)
Mol. Cell
, vol.48
, pp. 5-15
-
-
Hughes, A.L.1
Jin, Y.2
Rando, O.J.3
Struhl, K.4
-
23
-
-
84936759439
-
MPE-seq, a new method for the genome-wide analysis of chromatin structure
-
Ishii H., Kadonaga J.T., Ren B. MPE-seq, a new method for the genome-wide analysis of chromatin structure. Proc. Natl. Acad. Sci. USA 2015, 112:E3457-E3465.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E3457-E3465
-
-
Ishii, H.1
Kadonaga, J.T.2
Ren, B.3
-
24
-
-
84918527386
-
Pioneer transcription factors in cell reprogramming
-
Iwafuchi-Doi M., Zaret K.S. Pioneer transcription factors in cell reprogramming. Genes Dev. 2014, 28:2679-2692.
-
(2014)
Genes Dev.
, vol.28
, pp. 2679-2692
-
-
Iwafuchi-Doi, M.1
Zaret, K.S.2
-
25
-
-
84875972572
-
Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries
-
Jakobsen J.S., Waage J., Rapin N., Bisgaard H.C., Larsen F.S., Porse B.T. Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries. Genome Res. 2013, 23:592-603.
-
(2013)
Genome Res.
, vol.23
, pp. 592-603
-
-
Jakobsen, J.S.1
Waage, J.2
Rapin, N.3
Bisgaard, H.C.4
Larsen, F.S.5
Porse, B.T.6
-
26
-
-
60349089645
-
Nucleosome positioning and gene regulation: advances through genomics
-
Jiang C., Pugh B.F. Nucleosome positioning and gene regulation: advances through genomics. Nat. Rev. Genet. 2009, 10:161-172.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
27
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
Jin C., Felsenfeld G. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev. 2007, 21:1519-1529.
-
(2007)
Genes Dev.
, vol.21
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
28
-
-
0037291915
-
Transcriptional specificity of human SWI/SNF BRG1 and BRM chromatin remodeling complexes
-
Kadam S., Emerson B.M. Transcriptional specificity of human SWI/SNF BRG1 and BRM chromatin remodeling complexes. Mol. Cell 2003, 11:377-389.
-
(2003)
Mol. Cell
, vol.11
, pp. 377-389
-
-
Kadam, S.1
Emerson, B.M.2
-
29
-
-
84887320760
-
Extensive variation in chromatin states across humans
-
Kasowski M., Kyriazopoulou-Panagiotopoulou S., Grubert F., Zaugg J.B., Kundaje A., Liu Y., Boyle A.P., Zhang Q.C., Zakharia F., Spacek D.V., et al. Extensive variation in chromatin states across humans. Science 2013, 342:750-752.
-
(2013)
Science
, vol.342
, pp. 750-752
-
-
Kasowski, M.1
Kyriazopoulou-Panagiotopoulou, S.2
Grubert, F.3
Zaugg, J.B.4
Kundaje, A.5
Liu, Y.6
Boyle, A.P.7
Zhang, Q.C.8
Zakharia, F.9
Spacek, D.V.10
-
30
-
-
84940390239
-
Architectural and functional commonalities between enhancers and promoters
-
Kim T.K., Shiekhattar R. Architectural and functional commonalities between enhancers and promoters. Cell 2015, 162:948-959.
-
(2015)
Cell
, vol.162
, pp. 948-959
-
-
Kim, T.K.1
Shiekhattar, R.2
-
31
-
-
84897138228
-
Looping back to leap forward: transcription enters a new era
-
Levine M., Cattoglio C., Tjian R. Looping back to leap forward: transcription enters a new era. Cell 2014, 157:13-25.
-
(2014)
Cell
, vol.157
, pp. 13-25
-
-
Levine, M.1
Cattoglio, C.2
Tjian, R.3
-
32
-
-
79958777000
-
The nucleosome map of the mammalian liver
-
Li Z., Schug J., Tuteja G., White P., Kaestner K.H. The nucleosome map of the mammalian liver. Nat. Struct. Mol. Biol. 2011, 18:742-746.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 742-746
-
-
Li, Z.1
Schug, J.2
Tuteja, G.3
White, P.4
Kaestner, K.H.5
-
33
-
-
84862909192
-
Foxa1 and Foxa2 are essential for sexual dimorphism in liver cancer
-
Li Z., Tuteja G., Schug J., Kaestner K.H. Foxa1 and Foxa2 are essential for sexual dimorphism in liver cancer. Cell 2012, 148:72-83.
-
(2012)
Cell
, vol.148
, pp. 72-83
-
-
Li, Z.1
Tuteja, G.2
Schug, J.3
Kaestner, K.H.4
-
34
-
-
78649264722
-
P53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
-
Lidor Nili E., Field Y., Lubling Y., Widom J., Oren M., Segal E. p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy. Genome Res. 2010, 20:1361-1368.
-
(2010)
Genome Res.
, vol.20
, pp. 1361-1368
-
-
Lidor Nili, E.1
Field, Y.2
Lubling, Y.3
Widom, J.4
Oren, M.5
Segal, E.6
-
35
-
-
0027507894
-
An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array
-
McPherson C.E., Shim E.-Y., Friedman D.S., Zaret K.S. An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array. Cell 1993, 75:387-398.
-
(1993)
Cell
, vol.75
, pp. 387-398
-
-
McPherson, C.E.1
Shim, E.-Y.2
Friedman, D.S.3
Zaret, K.S.4
-
36
-
-
84891677378
-
CLOCK:BMAL1 is a pioneer-like transcription factor
-
Menet J.S., Pescatore S., Rosbash M. CLOCK:BMAL1 is a pioneer-like transcription factor. Genes Dev. 2014, 28:8-13.
-
(2014)
Genes Dev.
, vol.28
, pp. 8-13
-
-
Menet, J.S.1
Pescatore, S.2
Rosbash, M.3
-
37
-
-
84942983931
-
Absence of canonical marks of active chromatin in developmentally regulated genes
-
Pérez-Lluch S., Blanco E., Tilgner H., Curado J., Ruiz-Romero M., Corominas M., Guigó R. Absence of canonical marks of active chromatin in developmentally regulated genes. Nat. Genet. 2015, 47:1158-1167.
-
(2015)
Nat. Genet.
, vol.47
, pp. 1158-1167
-
-
Pérez-Lluch, S.1
Blanco, E.2
Tilgner, H.3
Curado, J.4
Ruiz-Romero, M.5
Corominas, M.6
Guigó, R.7
-
38
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A., Bajpai R., Swigut T., Brugmann S.A., Flynn R.A., Wysocka J. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 2011, 470:279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
39
-
-
0027402969
-
Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
-
Ramakrishnan V., Finch J.T., Graziano V., Lee P.L., Sweet R.M. Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature 1993, 362:219-223.
-
(1993)
Nature
, vol.362
, pp. 219-223
-
-
Ramakrishnan, V.1
Finch, J.T.2
Graziano, V.3
Lee, P.L.4
Sweet, R.M.5
-
40
-
-
83255164884
-
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
-
Rhee H.S., Pugh B.F. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 2011, 147:1408-1419.
-
(2011)
Cell
, vol.147
, pp. 1408-1419
-
-
Rhee, H.S.1
Pugh, B.F.2
-
41
-
-
84923596623
-
Subnucleosomal structures and nucleosome asymmetry across a genome
-
Rhee H.S., Bataille A.R., Zhang L., Pugh B.F. Subnucleosomal structures and nucleosome asymmetry across a genome. Cell 2014, 159:1377-1388.
-
(2014)
Cell
, vol.159
, pp. 1377-1388
-
-
Rhee, H.S.1
Bataille, A.R.2
Zhang, L.3
Pugh, B.F.4
-
42
-
-
64349088929
-
Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA
-
Sekiya T., Muthurajan U.M., Luger K., Tulin A.V., Zaret K.S. Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA. Genes Dev. 2009, 23:804-809.
-
(2009)
Genes Dev.
, vol.23
, pp. 804-809
-
-
Sekiya, T.1
Muthurajan, U.M.2
Luger, K.3
Tulin, A.V.4
Zaret, K.S.5
-
43
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y., Yue F., McCleary D.F., Ye Z., Edsall L., Kuan S., Wagner U., Dixon J., Lee L., Lobanenkov V.V., Ren B. A map of the cis-regulatory sequences in the mouse genome. Nature 2012, 488:116-120.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
44
-
-
0344778475
-
Nucleosome positioning by the winged helix transcription factor HNF3
-
Shim E.Y., Woodcock C., Zaret K.S. Nucleosome positioning by the winged helix transcription factor HNF3. Genes Dev. 1998, 12:5-10.
-
(1998)
Genes Dev.
, vol.12
, pp. 5-10
-
-
Shim, E.Y.1
Woodcock, C.2
Zaret, K.S.3
-
45
-
-
84937532893
-
Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming
-
Soufi A., Garcia M.F., Jaroszewicz A., Osman N., Pellegrini M., Zaret K.S. Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming. Cell 2015, 161:555-568.
-
(2015)
Cell
, vol.161
, pp. 555-568
-
-
Soufi, A.1
Garcia, M.F.2
Jaroszewicz, A.3
Osman, N.4
Pellegrini, M.5
Zaret, K.S.6
-
46
-
-
84875196326
-
Determinants of nucleosome positioning
-
Struhl K., Segal E. Determinants of nucleosome positioning. Nat. Struct. Mol. Biol. 2013, 20:267-273.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 267-273
-
-
Struhl, K.1
Segal, E.2
-
47
-
-
77952354898
-
Foxa1 functions as a pioneer transcription factor at transposable elements to activate Afp during differentiation of embryonic stem cells
-
Taube J.H., Allton K., Duncan S.A., Shen L., Barton M.C. Foxa1 functions as a pioneer transcription factor at transposable elements to activate Afp during differentiation of embryonic stem cells. J. Biol. Chem. 2010, 285:16135-16144.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 16135-16144
-
-
Taube, J.H.1
Allton, K.2
Duncan, S.A.3
Shen, L.4
Barton, M.C.5
-
48
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman R.E., Rynes E., Humbert R., Vierstra J., Maurano M.T., Haugen E., Sheffield N.C., Stergachis A.B., Wang H., Vernot B., et al. The accessible chromatin landscape of the human genome. Nature 2012, 489:75-82.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
-
49
-
-
77949393272
-
High nucleosome occupancy is encoded at human regulatory sequences
-
Tillo D., Kaplan N., Moore I.K., Fondufe-Mittendorf Y., Gossett A.J., Field Y., Lieb J.D., Widom J., Segal E., Hughes T.R. High nucleosome occupancy is encoded at human regulatory sequences. PLoS ONE 2010, 5:e9129.
-
(2010)
PLoS ONE
, vol.5
, pp. e9129
-
-
Tillo, D.1
Kaplan, N.2
Moore, I.K.3
Fondufe-Mittendorf, Y.4
Gossett, A.J.5
Field, Y.6
Lieb, J.D.7
Widom, J.8
Segal, E.9
Hughes, T.R.10
-
50
-
-
84892800329
-
Dynamic regulation of transcriptional states by chromatin and transcription factors
-
Voss T.C., Hager G.L. Dynamic regulation of transcriptional states by chromatin and transcription factors. Nat. Rev. Genet. 2014, 15:69-81.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 69-81
-
-
Voss, T.C.1
Hager, G.L.2
-
51
-
-
80053444296
-
Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development
-
Watts J.A., Zhang C., Klein-Szanto A.J., Kormish J.D., Fu J., Zhang M.Q., Zaret K.S. Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development. PLoS Genet. 2011, 7:e1002277.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002277
-
-
Watts, J.A.1
Zhang, C.2
Klein-Szanto, A.J.3
Kormish, J.D.4
Fu, J.5
Zhang, M.Q.6
Zaret, K.S.7
-
52
-
-
74949110964
-
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
-
Weiner A., Hughes A., Yassour M., Rando O.J., Friedman N. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res. 2010, 20:90-100.
-
(2010)
Genome Res.
, vol.20
, pp. 90-100
-
-
Weiner, A.1
Hughes, A.2
Yassour, M.3
Rando, O.J.4
Friedman, N.5
-
53
-
-
79955559703
-
Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation
-
Xi Y., Yao J., Chen R., Li W., He X. Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation. Genome Res. 2011, 21:718-724.
-
(2011)
Genome Res.
, vol.21
, pp. 718-724
-
-
Xi, Y.1
Yao, J.2
Chen, R.3
Li, W.4
He, X.5
-
54
-
-
84925543087
-
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation
-
Zabidi M.A., Arnold C.D., Schernhuber K., Pagani M., Rath M., Frank O., Stark A. Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation. Nature 2015, 518:556-559.
-
(2015)
Nature
, vol.518
, pp. 556-559
-
-
Zabidi, M.A.1
Arnold, C.D.2
Schernhuber, K.3
Pagani, M.4
Rath, M.5
Frank, O.6
Stark, A.7
-
55
-
-
80455144479
-
Pioneer transcription factors: establishing competence for gene expression
-
Zaret K.S., Carroll J.S. Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 2011, 25:2227-2241.
-
(2011)
Genes Dev.
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
56
-
-
25144482864
-
Foxa2 integrates the transcriptional response of the hepatocyte to fasting
-
Zhang L., Rubins N.E., Ahima R.S., Greenbaum L.E., Kaestner K.H. Foxa2 integrates the transcriptional response of the hepatocyte to fasting. Cell Metab. 2005, 2:141-148.
-
(2005)
Cell Metab.
, vol.2
, pp. 141-148
-
-
Zhang, L.1
Rubins, N.E.2
Ahima, R.S.3
Greenbaum, L.E.4
Kaestner, K.H.5
|