-
2
-
-
0031848112
-
Pathogenesis and diagnosis of Shiga toxinproducing Escherichia coli infections
-
Paton JC, Paton AW. 1998. Pathogenesis and diagnosis of Shiga toxinproducing Escherichia coli infections. Clin Microbiol Rev 11:450-479.
-
(1998)
Clin Microbiol Rev
, vol.11
, pp. 450-479
-
-
Paton, J.C.1
Paton, A.W.2
-
3
-
-
70449568272
-
Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
-
Ogura Y, Ooka T, Iguchi A, Toh H, Asadulghani M, Oshima K, Kodama T, Abe H, Nakayama K, Kurokawa K, Tobe T, Hattori M, Hayashi T. 2009. Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc Natl Acad Sci U S A 106:17939-17944. http://dx.doi.org/10.1073/pnas.0903585106.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 17939-17944
-
-
Ogura, Y.1
Ooka, T.2
Iguchi, A.3
Toh, H.4
Asadulghani, M.5
Oshima, K.6
Kodama, T.7
Abe, H.8
Nakayama, K.9
Kurokawa, K.10
Tobe, T.11
Hattori, M.12
Hayashi, T.13
-
4
-
-
12144289554
-
Dissecting virulence: systematic and functional analyses of a pathogenicity island
-
Deng W, Puente JL, Gruenheid S, Li Y, Vallance BA, Vazquez A, Barba J, Ibarra JA, O'Donnell P, Metalnikov P, Ashman K, Lee S, Goode D, Pawson T, Finlay BB. 2004. Dissecting virulence: systematic and functional analyses of a pathogenicity island. Proc Natl Acad Sci U S A 101: 3597-3602. http://dx.doi.org/10.1073/pnas.0400326101.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 3597-3602
-
-
Deng, W.1
Puente, J.L.2
Gruenheid, S.3
Li, Y.4
Vallance, B.A.5
Vazquez, A.6
Barba, J.7
Ibarra, J.A.8
O'Donnell, P.9
Metalnikov, P.10
Ashman, K.11
Lee, S.12
Goode, D.13
Pawson, T.14
Finlay, B.B.15
-
5
-
-
0025047435
-
A genetic locus of enteropathogenic Escherichia coli necessary for the production of attaching and effacing lesions on tissue culture cells
-
Jerse AE, Yu J, Tall BD, Kaper JB. 1990. A genetic locus of enteropathogenic Escherichia coli necessary for the production of attaching and effacing lesions on tissue culture cells. Proc Natl Acad Sci U S A 87:7839-7843. http://dx.doi.org/10.1073/pnas.87.20.7839.
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, pp. 7839-7843
-
-
Jerse, A.E.1
Yu, J.2
Tall, B.D.3
Kaper, J.B.4
-
6
-
-
0028945803
-
A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens
-
McDaniel TK, Jarvis KG, Donnenberg MS, Kaper JB. 1995. A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens. Proc Natl Acad Sci U S A 92:1664-1668. http://dx.doi.org/10.1073/pnas.92.5.1664.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 1664-1668
-
-
McDaniel, T.K.1
Jarvis, K.G.2
Donnenberg, M.S.3
Kaper, J.B.4
-
7
-
-
0023644567
-
Identification of the carbohydrate receptor for Shiga toxin produced by Shigella dysenteriae type 1
-
Lindberg AA, Brown JE, Stromberg N, Westling-Ryd M, Schultz JE, Karlsson KA. 1987. Identification of the carbohydrate receptor for Shiga toxin produced by Shigella dysenteriae type 1. J Biol Chem 262:1779-1785.
-
(1987)
J Biol Chem
, vol.262
, pp. 1779-1785
-
-
Lindberg, A.A.1
Brown, J.E.2
Stromberg, N.3
Westling-Ryd, M.4
Schultz, J.E.5
Karlsson, K.A.6
-
8
-
-
0028889506
-
Specific interaction of Escherichia coli O157: H7-derived Shiga-like toxin II with human renal endothelial cells
-
Louise CB, Obrig TG. 1995. Specific interaction of Escherichia coli O157: H7-derived Shiga-like toxin II with human renal endothelial cells. J Infect Dis 172:1397-1401. http://dx.doi.org/10.1093/infdis/172.5.1397.
-
(1995)
J Infect Dis
, vol.172
, pp. 1397-1401
-
-
Louise, C.B.1
Obrig, T.G.2
-
9
-
-
0027178560
-
Comparison of the relative toxicities of Shiga-like toxins type I and type II for mice
-
Tesh VL, Burris JA, Owens JW, Gordon VM, Wadolkowski EA, O'Brien AD, Samuel JE. 1993. Comparison of the relative toxicities of Shiga-like toxins type I and type II for mice. Infect Immun 61:3392-3402.
-
(1993)
Infect Immun
, vol.61
, pp. 3392-3402
-
-
Tesh, V.L.1
Burris, J.A.2
Owens, J.W.3
Gordon, V.M.4
Wadolkowski, E.A.5
O'Brien, A.D.6
Samuel, J.E.7
-
10
-
-
0022512195
-
Two toxin-converting phages from Escherichia coli O157:H7 strain 933 encode antigenically distinct toxins with similar biologic activities
-
Strockbine NA, Marques LR, Newland JW, Smith HW, Holmes RK, O'Brien AD. 1986. Two toxin-converting phages from Escherichia coli O157:H7 strain 933 encode antigenically distinct toxins with similar biologic activities. Infect Immun 53:135-140.
-
(1986)
Infect Immun
, vol.53
, pp. 135-140
-
-
Strockbine, N.A.1
Marques, L.R.2
Newland, J.W.3
Smith, H.W.4
Holmes, R.K.5
O'Brien, A.D.6
-
11
-
-
0033856277
-
Structural analysis of phage-borne stx genes and their flanking sequences in Shiga toxin-producing Escherichia coli and Shigella dysenteriae type 1 strains
-
Unkmeir A, Schmidt H. 2000. Structural analysis of phage-borne stx genes and their flanking sequences in Shiga toxin-producing Escherichia coli and Shigella dysenteriae type 1 strains. Infect Immun 68:4856-4864. http://dx.doi.org/10.1128/IAI.68.9.4856-4864.2000.
-
(2000)
Infect Immun
, vol.68
, pp. 4856-4864
-
-
Unkmeir, A.1
Schmidt, H.2
-
12
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han CG, Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H, Honda T, Sasakawa C, Ogasawara N, Yasunaga T, Kuhara S, Shiba T, Hattori M, Shinagawa H. 2001. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8:11-22. http://dx.doi.org/10.1093/dnares/8.1.11.
-
(2001)
DNA Res
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
Kurokawa, K.4
Ishii, K.5
Yokoyama, K.6
Han, C.G.7
Ohtsubo, E.8
Nakayama, K.9
Murata, T.10
Tanaka, M.11
Tobe, T.12
Iida, T.13
Takami, H.14
Honda, T.15
Sasakawa, C.16
Ogasawara, N.17
Yasunaga, T.18
Kuhara, S.19
Shiba, T.20
Hattori, M.21
Shinagawa, H.22
more..
-
13
-
-
0035477452
-
Diversification of Escherichia coli genomes: are bacteriophages the major contributors?
-
Ohnishi M, Kurokawa K, Hayashi T. 2001. Diversification of Escherichia coli genomes: are bacteriophages the major contributors? Trends Microbiol 9:481-485. http://dx.doi.org/10.1016/S0966-842X(01)02173-4.
-
(2001)
Trends Microbiol
, vol.9
, pp. 481-485
-
-
Ohnishi, M.1
Kurokawa, K.2
Hayashi, T.3
-
14
-
-
0028167588
-
Community-wide outbreak of hemolytic-uremic syndrome associated with non-O157 verocytotoxinproducing Escherichia coli
-
Caprioli A, Luzzi I, Rosmini F, Resti C, Edefonti A, Perfumo F, Farina C, Goglio A, Gianviti A, Rizzoni G. 1994. Community-wide outbreak of hemolytic-uremic syndrome associated with non-O157 verocytotoxinproducing Escherichia coli. J Infect Dis 169:208-211. http://dx.doi.org/10.1093/infdis/169.1.208.
-
(1994)
J Infect Dis
, vol.169
, pp. 208-211
-
-
Caprioli, A.1
Luzzi, I.2
Rosmini, F.3
Resti, C.4
Edefonti, A.5
Perfumo, F.6
Farina, C.7
Goglio, A.8
Gianviti, A.9
Rizzoni, G.10
-
15
-
-
0029927272
-
Molecular microbiological investigation of an outbreak of hemolytic-uremic syndrome caused by dry fermented sausage contaminated with Shiga-like toxin-producing Escherichia coli
-
Paton AW, Ratcliff RM, Doyle RM, Seymour-Murray J, Davos D, Lanser JA, Paton JC. 1996. Molecular microbiological investigation of an outbreak of hemolytic-uremic syndrome caused by dry fermented sausage contaminated with Shiga-like toxin-producing Escherichia coli. J Clin Microbiol 34:1622-1627.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 1622-1627
-
-
Paton, A.W.1
Ratcliff, R.M.2
Doyle, R.M.3
Seymour-Murray, J.4
Davos, D.5
Lanser, J.A.6
Paton, J.C.7
-
16
-
-
0029653530
-
Community outbreak of hemolytic uremic syndrome attributable to Escherichia coli O111: NM-South Australia 1995
-
557-558
-
Centers for Disease Control and Prevention. 1995. Community outbreak of hemolytic uremic syndrome attributable to Escherichia coli O111: NM-South Australia 1995. MMWR Morb Mortal Wkly Rep 44:550-551, 557-558.
-
(1995)
MMWR Morb Mortal Wkly Rep
, vol.44
, pp. 550-551
-
-
-
18
-
-
0030924006
-
Shiga toxin-producing Escherichia coli isolates from cases of human disease show enhanced adherence to intestinal epithelial (Henle 407) cells
-
Paton AW, Voss E, Manning PA, Paton JC. 1997. Shiga toxin-producing Escherichia coli isolates from cases of human disease show enhanced adherence to intestinal epithelial (Henle 407) cells. Infect Immun 65:3799-3805.
-
(1997)
Infect Immun
, vol.65
, pp. 3799-3805
-
-
Paton, A.W.1
Voss, E.2
Manning, P.A.3
Paton, J.C.4
-
19
-
-
80255127234
-
Cutadapt removes adapter sequences from highthroughput sequencing reads
-
Martin M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnetjournal 17:10-12.
-
(2011)
EMBnetjournal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
20
-
-
78349238864
-
Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies
-
Boisvert S, Laviolette F, Corbeil J. 2010. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J Comp Biol 17:1519-1533. http://dx.doi.org/10.1089/cmb.2009.0238.
-
(2010)
J Comp Biol
, vol.17
, pp. 1519-1533
-
-
Boisvert, S.1
Laviolette, F.2
Corbeil, J.3
-
21
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualization and annotation. Bioin formatics 16:944-945. http://dx.doi.org/10.1093/bioinformatics/16.10.944.
-
(2000)
Bioin formatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
22
-
-
84865553519
-
Comparative genomics of Shiga toxin encoding bacteriophages
-
Smith DL, Rooks DJ, Fogg PC, Darby AC, Thomson NR, McCarthy AJ, Allison HE. 2012. Comparative genomics of Shiga toxin encoding bacteriophages. BMC Genomics 13:311. http://dx.doi.org/10.1186/1471-2164-13-311.
-
(2012)
BMC Genomics
, vol.13
, pp. 311
-
-
Smith, D.L.1
Rooks, D.J.2
Fogg, P.C.3
Darby, A.C.4
Thomson, N.R.5
McCarthy, A.J.6
Allison, H.E.7
-
23
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
24
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. http://dx.doi.org/10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
25
-
-
84859210032
-
Fast gapped-read alignment with Bowtie. 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie. 2. Nat Methods 9:357-359. http://dx.doi.org/10.1038/nmeth.1923.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
26
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
27
-
-
77956193448
-
progresiveMauve: multiple genome alignment with gene gain, loss, and rearrangement
-
Darling AE, Mau B, Perna NT. 2010. progresiveMauve: multiple genome alignment with gene gain, loss, and rearrangement. PLoS One 5:e11147. http://dx.doi.org/10.1371/journal.pone.0011147.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
28
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
29
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079. http://dx.doi.org/10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
30
-
-
79961109150
-
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
-
Alikhan N-F, Petty NK, Ben Zakour NL, Beatson SA. 2011. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12:402. http://dx.doi.org/10.1186/1471-2164-12-402.
-
(2011)
BMC Genomics
, vol.12
, pp. 402
-
-
Alikhan, N.-F.1
Petty, N.K.2
Ben Zakour, N.L.3
Beatson, S.A.4
-
31
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5:621-628. http://dx.doi.org/10.1038/nmeth.1226.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
32
-
-
14044274282
-
EcMLST: an online database for multi locus sequence typing of pathogenic Escherichia coli
-
Los Alamitos, CA. Institute of Electrical and Electronics Engineers, Washington, DC
-
Qi W, Lacher DW, Bumbaugh AC, Hyma KE, Ouellette LM, Large TM, Tarr CL, Whittam TS. 2004. EcMLST: an online database for multi locus sequence typing of pathogenic Escherichia coli, p 520-521. In Proceedings of the 2004 IEEEE Computational Systems Bioinformatics Conference, Los Alamitos, CA. Institute of Electrical and Electronics Engineers, Washington, DC.
-
(2004)
Proceedings of the 2004 IEEEE Computational Systems Bioinformatics Conference
, pp. 520-521
-
-
Qi, W.1
Lacher, D.W.2
Bumbaugh, A.C.3
Hyma, K.E.4
Ouellette, L.M.5
Large, T.M.6
Tarr, C.L.7
Whittam, T.S.8
-
33
-
-
79551599525
-
Mugsy: fast multiple alignment of closely related whole genomes
-
Angiuoli SV, Salzberg SL. 2011. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27:334-342. http://dx.doi.org/10.1093/bioinformatics/btq665.
-
(2011)
Bioinformatics
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
34
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552. http://dx.doi.org/10.1093/oxfordjournals.molbev.a026334.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
35
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
36
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguenec C, Lescat M, Mangenot S, Martinez-Jehanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Medigue C, Rocha EP, Denamur E. 2009. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5:e1000344. http://dx.doi.org/10.1371/journal.pgen.1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
Bidet, P.6
Bingen, E.7
Bonacorsi, S.8
Bouchier, C.9
Bouvet, O.10
Calteau, A.11
Chiapello, H.12
Clermont, O.13
Cruveiller, S.14
Danchin, A.15
Diard, M.16
Dossat, C.17
Karoui, M.E.18
Frapy, E.19
Garry, L.20
Ghigo, J.M.21
Gilles, A.M.22
Johnson, J.23
Le Bouguenec, C.24
Lescat, M.25
Mangenot, S.26
Martinez-Jehanne, V.27
Matic, I.28
Nassif, X.29
Oztas, S.30
Petit, M.A.31
Pichon, C.32
Rouy, Z.33
Ruf, C.S.34
Schneider, D.35
Tourret, J.36
Vacherie, B.37
Vallenet, D.38
Medigue, C.39
Rocha, E.P.40
Denamur, E.41
more..
-
37
-
-
34548816493
-
Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes
-
Ogura Y, Ooka T, Asadulghani Terajima J, Nougayrede JP, Kurokawa K, Tashiro K, Tobe T, Nakayama K, Kuhara S, Oswald E, Watanabe H, Hayashi T. 2007. Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes. Genome Biol 8:R138. http://dx.doi.org/10.1186/gb-2007-8-7-r138.
-
(2007)
Genome Biol
, vol.8
, pp. R138
-
-
Ogura, Y.1
Ooka, T.2
Asadulghani Terajima, J.3
Nougayrede, J.P.4
Kurokawa, K.5
Tashiro, K.6
Tobe, T.7
Nakayama, K.8
Kuhara, S.9
Oswald, E.10
Watanabe, H.11
Hayashi, T.12
-
38
-
-
0022443738
-
Aerobactin biosynthesis and transport genes of plasmid ColV-K30 in Escherichia coli K-12
-
de Lorenzo V, Bindereif A, Paw BH, Neilands JB. 1986. Aerobactin biosynthesis and transport genes of plasmid ColV-K30 in Escherichia coli K-12. J Bacteriol 165:570-578.
-
(1986)
J Bacteriol
, vol.165
, pp. 570-578
-
-
de Lorenzo, V.1
Bindereif, A.2
Paw, B.H.3
Neilands, J.B.4
-
39
-
-
39749120541
-
Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation by FNR, NarL and NarP
-
Partridge JD, Browning DF, Xu M, Newnham LJ, Scott C, Roberts RE, Poole RK, Green J. 2008. Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation by FNR, NarL and NarP. Microbiology 154:608-618. http://dx.doi.org/10.1099/mic.0.2007/012146-0.
-
(2008)
Microbiology
, vol.154
, pp. 608-618
-
-
Partridge, J.D.1
Browning, D.F.2
Xu, M.3
Newnham, L.J.4
Scott, C.5
Roberts, R.E.6
Poole, R.K.7
Green, J.8
-
40
-
-
0034716946
-
Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages
-
Juhala RJ, Ford ME, Duda RL, Youlton A, Hatfull GF, Hendrix RW.2000 Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol 299:27-51. http://dx.doi.org/10.1006/jmbi.2000.3729.
-
(2000)
J Mol Biol
, vol.299
, pp. 27-51
-
-
Juhala, R.J.1
Ford, M.E.2
Duda, R.L.3
Youlton, A.4
Hatfull, G.F.5
Hendrix, R.W.6
-
42
-
-
0037934515
-
End-sequence profiling: sequence-based analysis of aberrant genomes
-
Volik S, Zhao S, Chin K, Brebner JH, Herndon DR, Tao Q, Kowbel D, Huang G, Lapuk A, Kuo WL, Magrane G, De Jong P, Gray JW, Collins C. 2003. End-sequence profiling: sequence-based analysis of aberrant genomes. Proc Natl Acad Sci U S A 100:7696-7701. http://dx.doi.org/10.1073/pnas.1232418100.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 7696-7701
-
-
Volik, S.1
Zhao, S.2
Chin, K.3
Brebner, J.H.4
Herndon, D.R.5
Tao, Q.6
Kowbel, D.7
Huang, G.8
Lapuk, A.9
Kuo, W.L.10
Magrane, G.11
De Jong, P.12
Gray, J.W.13
Collins, C.14
-
43
-
-
34250682175
-
Subtyping method for Escherichia coli Shiga toxin (verocytotoxin) 2 variants and correlations to clinical manifestations
-
Persson S, Olsen KE, Ethelberg S, Scheutz F. 2007. Subtyping method for Escherichia coli Shiga toxin (verocytotoxin) 2 variants and correlations to clinical manifestations. J Clin Microbiol 45:2020-2024. http://dx.doi.org/10.1128/JCM.02591-06.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 2020-2024
-
-
Persson, S.1
Olsen, K.E.2
Ethelberg, S.3
Scheutz, F.4
-
44
-
-
0029035804
-
Comparative toxicity and virulence of Escherichia coli clones expressing variant and chimeric Shiga-like toxin type II operons
-
Paton AW, Bourne AJ, Manning PA, Paton JC. 1995. Comparative toxicity and virulence of Escherichia coli clones expressing variant and chimeric Shiga-like toxin type II operons. Infect Immun 63:2450-2458.
-
(1995)
Infect Immun
, vol.63
, pp. 2450-2458
-
-
Paton, A.W.1
Bourne, A.J.2
Manning, P.A.3
Paton, J.C.4
-
45
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, Prior K, Szczepanowski R, Ji Y, Zhang W, McLaughlin SF, Henkhaus JK, Leopold B, Bielaszewska M, Prager R, Brzoska PM, Moore RL, Guenther S, Rothberg JM, Karch H. 2011. Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One 6:e22751. http://dx.doi.org/10.1371/journal.pone.0022751.
-
(2011)
PLoS One
, vol.6
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
Zentz, E.B.4
Leopold, S.R.5
Rico, A.6
Prior, K.7
Szczepanowski, R.8
Ji, Y.9
Zhang, W.10
McLaughlin, S.F.11
Henkhaus, J.K.12
Leopold, B.13
Bielaszewska, M.14
Prager, R.15
Brzoska, P.M.16
Moore, R.L.17
Guenther, S.18
Rothberg, J.M.19
Karch, H.20
more..
-
46
-
-
80052150179
-
Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin C-S, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Moller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK. 2011. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany.NEngl J Med 365:709-717. http://dx.doi.org/10.1056/NEJMoa1106920.
-
(2011)
NEngl J Med
, vol.365
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
Bashir, A.4
Boisen, N.5
Scheutz, F.6
Paxinos, E.E.7
Sebra, R.8
Chin, C.-S.9
Iliopoulos, D.10
Klammer, A.11
Peluso, P.12
Lee, L.13
Kislyuk, A.O.14
Bullard, J.15
Kasarskis, A.16
Wang, S.17
Eid, J.18
Rank, D.19
Redman, J.C.20
Steyert, S.R.21
Frimodt-Moller, J.22
Struve, C.23
Petersen, A.M.24
Krogfelt, K.A.25
Nataro, J.P.26
Schadt, E.E.27
Waldor, M.K.28
more..
-
47
-
-
80052173621
-
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4
-
Rohde H, Qin J, Cui Y, Li D, Loman NJ, Hentschke M, Chen W, Pu F, Peng Y, Li J, Xi F, Li S, Li Y, Zhang Z, Yang X, Zhao M, Wang P, Guan Y, Cen Z, Zhao X, Christner M, Kobbe R, Loos S, Oh J, Yang L, Danchin A, Gao GF, Song Y, Li Y, Yang H, Wang J, Xu J, Pallen MJ, Wang J, Aepfelbacher M, Yang R, E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium. 2011. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 365:718-724. http://dx.doi.org/10.1056/NEJMoa1107643.
-
(2011)
N Engl J Med
, vol.365
, pp. 718-724
-
-
Rohde, H.1
Qin, J.2
Cui, Y.3
Li, D.4
Loman, N.J.5
Hentschke, M.6
Chen, W.7
Pu, F.8
Peng, Y.9
Li, J.10
Xi, F.11
Li, S.12
Li, Y.13
Zhang, Z.14
Yang, X.15
Zhao, M.16
Wang, P.17
Guan, Y.18
Cen, Z.19
Zhao, X.20
Christner, M.21
Kobbe, R.22
Loos, S.23
Oh, J.24
Yang, L.25
Danchin, A.26
Gao, G.F.27
Song, Y.28
Li, Y.29
Yang, H.30
Wang, J.31
Xu, J.32
Pallen, M.J.33
Wang, J.34
Aepfelbacher, M.35
Yang, R.36
more..
-
48
-
-
57349152384
-
Optical mapping and 454 sequencing of Escherichia coli O157:H7 isolates linked to the US 2006 spinach-associated outbreak
-
Kotewicz ML, Mammel MK, LeClerc JE, Cebula TA. 2008. Optical mapping and 454 sequencing of Escherichia coli O157:H7 isolates linked to the US 2006 spinach-associated outbreak. Microbiology 154:3518-3528. http://dx.doi.org/10.1099/mic.0.2008/019026-0.
-
(2008)
Microbiology
, vol.154
, pp. 3518-3528
-
-
Kotewicz, M.L.1
Mammel, M.K.2
LeClerc, J.E.3
Cebula, T.A.4
-
49
-
-
0037168552
-
Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning
-
Ohnishi M, Terajima J, Kurokawa K, Nakayama K, Murata T, Tamura K, Ogura Y, Watanabe H, Hayashi T. 2002. Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning. Proc Natl Acad Sci U S A 99:17043-17048. http://dx.doi.org/10.1073/pnas.262441699.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 17043-17048
-
-
Ohnishi, M.1
Terajima, J.2
Kurokawa, K.3
Nakayama, K.4
Murata, T.5
Tamura, K.6
Ogura, Y.7
Watanabe, H.8
Hayashi, T.9
-
50
-
-
84875582587
-
The adaptation of temperate bacteriophages to their host genomes
-
Bobay L-M, Rocha EPC, Touchon M. 2013. The adaptation of temperate bacteriophages to their host genomes. Mol Biol Evol 30:737-751. http://dx.doi.org/10.1093/molbev/mss279.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 737-751
-
-
Bobay, L.-M.1
Rocha, E.P.C.2
Touchon, M.3
|