메뉴 건너뛰기




Volumn 7, Issue FEB, 2016, Pages

Complete nucleotide sequence of pGA45, a 140,698-bp IncFIIY plasmid encoding blaIMI-3-mediated carbapenem resistance, from river sediment

Author keywords

Antibiotic resistance; Carbapenem resistance; PGA45; Plasmid; T6SS

Indexed keywords

CARBAPENEM; IMIPENEM;

EID: 84962176168     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00188     Document Type: Article
Times cited : (14)

References (30)
  • 1
    • 13744259814 scopus 로고    scopus 로고
    • Carbapenemase-producing Enterobacteriaceae, U.S. rivers
    • Aubron, C., Poirel, L., Ash, R. J., and Nordmann, P. (2005). Carbapenemase-producing Enterobacteriaceae, U.S. rivers. Emerg. Infect. Dis. 11, 260-264. doi: 10.3201/eid1102.030684
    • (2005) Emerg. Infect. Dis , vol.11 , pp. 260-264
    • Aubron, C.1    Poirel, L.2    Ash, R.J.3    Nordmann, P.4
  • 2
    • 84927135123 scopus 로고    scopus 로고
    • NDM-1 encoded by a pNDM-BJ01-like plasmid p3SP-NDM in clinical Enterobacter aerogenes
    • Chen, Z., Li, H., Feng, J., Li, Y., Chen, X., Guo, X., et al. (2015). NDM-1 encoded by a pNDM-BJ01-like plasmid p3SP-NDM in clinical Enterobacter aerogenes. Front. Microbiol. 6:294. doi: 10.3389/fmicb.2015.00294
    • (2015) Front. Microbiol , vol.6 , pp. 294
    • Chen, Z.1    Li, H.2    Feng, J.3    Li, Y.4    Chen, X.5    Guo, X.6
  • 3
    • 78650977351 scopus 로고    scopus 로고
    • Carbapenemases in enterobacteria, Hong Kong, China, 2009
    • Chu, Y. W., Tung, V. W., Cheung, T. K., Chu, M. Y., Cheng, N., Lai, C., et al. (2011). Carbapenemases in enterobacteria, Hong Kong, China, 2009. Emerg. Infect. Dis. 17, 130-132. doi: 10.3201/eid1701.101443
    • (2011) Emerg. Infect. Dis , vol.17 , pp. 130-132
    • Chu, Y.W.1    Tung, V.W.2    Cheung, T.K.3    Chu, M.Y.4    Cheng, N.5    Lai, C.6
  • 4
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • Delcher, A. L., Bratke, K. A., Powers, E. C., and Salzberg, S. L. (2007). Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23, 673-679. doi: 10.1093/bioinformatics/btm009
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 5
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with GLIMMER
    • Delcher, A. L., Harmon, D., Kasif, S., White, O., and Salzberg, S. L. (1999). Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27, 4636-4641. doi: 10.1093/nar/27.23.4636
    • (1999) Nucleic Acids Res , vol.27 , pp. 4636-4641
    • Delcher, A.L.1    Harmon, D.2    Kasif, S.3    White, O.4    Salzberg, S.L.5
  • 6
    • 84924587667 scopus 로고    scopus 로고
    • Dissemination of antibiotic resistance genes in representative broiler feedlots environments: identification of indicator ARGs and correlations with environmental variables
    • He, L.-Y., Liu, Y.-S., Su, H.-C., Zhao, J.-L., Liu, S.-S., Chen, J., et al. (2014). Dissemination of antibiotic resistance genes in representative broiler feedlots environments: identification of indicator ARGs and correlations with environmental variables. Environ. Sci. Technol. 48, 13120-13129. doi: 10.1021/es5041267
    • (2014) Environ. Sci. Technol , vol.48 , pp. 13120-13129
    • He, L.-Y.1    Liu, Y.-S.2    Su, H.-C.3    Zhao, J.-L.4    Liu, S.-S.5    Chen, J.6
  • 8
    • 84880272508 scopus 로고    scopus 로고
    • Complete sequences of two plasmids in a blaNDM-1-positive Klebsiella oxytoca isolate from Taiwan
    • Huang, T. W., Wang, J. T., Lauderdale, T. L., Liao, T. L., Lai, J. F., Tan, M. C., et al. (2013). Complete sequences of two plasmids in a blaNDM-1-positive Klebsiella oxytoca isolate from Taiwan. Antimicrob. Agents Chemother. 57, 4072-4076. doi: 10.1128/AAC.02266-12
    • (2013) Antimicrob. Agents Chemother , vol.57 , pp. 4072-4076
    • Huang, T.W.1    Wang, J.T.2    Lauderdale, T.L.3    Liao, T.L.4    Lai, J.F.5    Tan, M.C.6
  • 9
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li, R., Li, Y., Kristiansen, K., and Wang, J. (2008). SOAP: short oligonucleotide alignment program. Bioinformatics 24, 713-714. doi: 10.1093/bioinformatics/btn025
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 10
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., et al. (2010). De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272. doi: 10.1101/gr.097261.109
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5    Shi, Z.6
  • 11
    • 84874024633 scopus 로고    scopus 로고
    • Complete sequence of an IncN plasmid, pIMP-HZ1, carrying blaIMP-4 in a Klebsiella pneumoniae strain associated with medical travel to China
    • Lo, W. U., Cheung, Y. Y., Lai, E., Lung, D., Que, T. L., and Ho, P. L. (2013). Complete sequence of an IncN plasmid, pIMP-HZ1, carrying blaIMP-4 in a Klebsiella pneumoniae strain associated with medical travel to China. Antimicrob. Agents Chemother. 57, 1561-1562. doi: 10.1128/AAC.02298-12
    • (2013) Antimicrob. Agents Chemother , vol.57 , pp. 1561-1562
    • Lo, W.U.1    Cheung, Y.Y.2    Lai, E.3    Lung, D.4    Que, T.L.5    Ho, P.L.6
  • 12
    • 84863337508 scopus 로고    scopus 로고
    • Complete sequence of a novel 178-kilobase plasmid carrying bla(NDM-1) in a Providencia stuartii strain isolated in Afghanistan
    • McGann, P., Hang, J., Clifford, R. J., Yang, Y., Kwak, Y. I., Kuschner, R. A., et al. (2012). Complete sequence of a novel 178-kilobase plasmid carrying bla(NDM-1) in a Providencia stuartii strain isolated in Afghanistan. Antimicrob. Agents Chemother. 56, 1673-1679. doi: 10.1128/AAC.05604-11
    • (2012) Antimicrob. Agents Chemother , vol.56 , pp. 1673-1679
    • McGann, P.1    Hang, J.2    Clifford, R.J.3    Yang, Y.4    Kwak, Y.I.5    Kuschner, R.A.6
  • 13
    • 84860516573 scopus 로고    scopus 로고
    • Carbapenem resistance in Enterobacteriaceae: here is the storm! Trends Mol
    • Nordmann, P., Dortet, L., and Poirel, L. (2012). Carbapenem resistance in Enterobacteriaceae: here is the storm! Trends Mol. Med. 18, 263-272. doi: 10.1016/j.molmed.2012.03.003
    • (2012) Med , vol.18 , pp. 263-272
    • Nordmann, P.1    Dortet, L.2    Poirel, L.3
  • 14
    • 33845302994 scopus 로고    scopus 로고
    • Antibiotic resistance genes as emerging contaminants: studies in northern Colorado
    • Pruden, A., Pei, R., Storteboom, H., and Carlson, K. H. (2006). Antibiotic resistance genes as emerging contaminants: studies in northern Colorado. Environ. Sci. Technol. 40, 7445-7450. doi: 10.1021/es060413l
    • (2006) Environ. Sci. Technol , vol.40 , pp. 7445-7450
    • Pruden, A.1    Pei, R.2    Storteboom, H.3    Carlson, K.H.4
  • 15
    • 31944433740 scopus 로고    scopus 로고
    • Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system
    • Pukatzki, S., Ma, A. T., Sturtevant, D., Krastins, B., Sarracino, D., Nelson, W. C., et al. (2006). Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system. Proc. Natl. Acad. Sci. U.S.A. 103, 1528-1533. doi: 10.1073/pnas.0510322103
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 1528-1533
    • Pukatzki, S.1    Ma, A.T.2    Sturtevant, D.3    Krastins, B.4    Sarracino, D.5    Nelson, W.C.6
  • 16
    • 84925356906 scopus 로고    scopus 로고
    • NDM-1-producing Enterobacteriaceae in a teaching hospital in Shanghai, China: IncX3-type plasmids may contribute to the dissemination of blaNDM-1
    • Qu, H., Wang, X., Ni, Y., Liu, J., Tan, R., Huang, J., et al. (2015). NDM-1-producing Enterobacteriaceae in a teaching hospital in Shanghai, China: IncX3-type plasmids may contribute to the dissemination of blaNDM-1. Int. J. Infect. Dis. 34, 8-13. doi: 10.1016/j.ijid.2015.02.020
    • (2015) Int. J. Infect. Dis , vol.34 , pp. 8-13
    • Qu, H.1    Wang, X.2    Ni, Y.3    Liu, J.4    Tan, R.5    Huang, J.6
  • 17
    • 0029795199 scopus 로고    scopus 로고
    • Characterization of IMI-1 β-lactamase, a class A carbapenem-hydrolyzing enzyme from Enterobacter cloacae
    • Rasmussen, B. A., Bush, K., Keeney, D., Yang, Y. J., Hare, R., O'gara, C., et al. (1996). Characterization of IMI-1 β-lactamase, a class A carbapenem-hydrolyzing enzyme from Enterobacter cloacae. Antimicrob. Agents Chemother. 40, 2080-2086.
    • (1996) Antimicrob. Agents Chemother , vol.40 , pp. 2080-2086
    • Rasmussen, B.A.1    Bush, K.2    Keeney, D.3    Yang, Y.J.4    Hare, R.5    O'gara, C.6
  • 18
    • 84856072286 scopus 로고    scopus 로고
    • First detection of blaIMI-2 gene in a clinical Escherichia coli strain
    • Rojo-Bezares, B., Martin, C., Lopez, M., Torres, C., and Saenz, Y. (2012). First detection of blaIMI-2 gene in a clinical Escherichia coli strain. Antimicrob. Agents Chemother. 56, 1146-1147. doi: 10.1128/AAC.05478-11
    • (2012) Antimicrob. Agents Chemother , vol.56 , pp. 1146-1147
    • Rojo-Bezares, B.1    Martin, C.2    Lopez, M.3    Torres, C.4    Saenz, Y.5
  • 19
    • 84892670882 scopus 로고    scopus 로고
    • Type VI secretion system effectors: poisons with a purpose
    • Russell, A. B., Peterson, S. B., and Mougous, J. D. (2014). Type VI secretion system effectors: poisons with a purpose. Nat. Rev. Microbiol. 12, 137-148. doi: 10.1038/nrmicro3185
    • (2014) Nat. Rev. Microbiol , vol.12 , pp. 137-148
    • Russell, A.B.1    Peterson, S.B.2    Mougous, J.D.3
  • 20
    • 0032518163 scopus 로고    scopus 로고
    • Microbial gene identification using interpolated Markov models
    • Salzberg, S. L., Delcher, A. L., Kasif, S., and White, O. (1998). Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 26, 544-548. doi: 10.1093/nar/26.2.544
    • (1998) Nucleic Acids Res , vol.26 , pp. 544-548
    • Salzberg, S.L.1    Delcher, A.L.2    Kasif, S.3    White, O.4
  • 21
    • 78650215467 scopus 로고    scopus 로고
    • Distribution of the putative type VI secretion system core genes in Klebsiella spp
    • Sarris, P. F., Zoumadakis, C., Panopoulos, N. J., and Scoulica, E. V. (2011). Distribution of the putative type VI secretion system core genes in Klebsiella spp. Infect. Genet. Evol. 11, 157-166. doi: 10.1016/j.meegid.2010.09.006
    • (2011) Infect. Genet. Evol , vol.11 , pp. 157-166
    • Sarris, P.F.1    Zoumadakis, C.2    Panopoulos, N.J.3    Scoulica, E.V.4
  • 22
    • 84931261772 scopus 로고    scopus 로고
    • Production of plasmid-encoding NDM-1 in clinical Raoultella ornithinolytica and Leclercia adecarboxylata from China
    • Sun, F., Yin, Z., Feng, J., Qiu, Y., Zhang, D., Luo, W., et al. (2015). Production of plasmid-encoding NDM-1 in clinical Raoultella ornithinolytica and Leclercia adecarboxylata from China. Front. Microbiol. 6:458. doi: 10.3389/fmicb.2015.00458
    • (2015) Front. Microbiol , vol.6 , pp. 458
    • Sun, F.1    Yin, Z.2    Feng, J.3    Qiu, Y.4    Zhang, D.5    Luo, W.6
  • 23
    • 84879167799 scopus 로고    scopus 로고
    • Enterobacter cloacae producing an uncommon class A carbapenemase, IMI-1, from Singapore
    • Teo, J. W., La, M. V., Krishnan, P., Ang, B., Jureen, R., and Lin, R. T. (2013). Enterobacter cloacae producing an uncommon class A carbapenemase, IMI-1, from Singapore. J. Med. Microbiol. 62, 1086-1088. doi: 10.1099/jmm.0.053363-0
    • (2013) J. Med. Microbiol , vol.62 , pp. 1086-1088
    • Teo, J.W.1    La, M.V.2    Krishnan, P.3    Ang, B.4    Jureen, R.5    Lin, R.T.6
  • 24
    • 84862771888 scopus 로고    scopus 로고
    • Carbapenem-hydrolyzing oxacillinase in high resistant strains of Acinetobacter baumannii isolated from India
    • Tiwari, V., Kapil, A., and Moganty, R. R. (2012). Carbapenem-hydrolyzing oxacillinase in high resistant strains of Acinetobacter baumannii isolated from India. Microb. Pathog. 53, 81-86. doi: 10.1016/j.micpath.2012.05.004
    • (2012) Microb. Pathog , vol.53 , pp. 81-86
    • Tiwari, V.1    Kapil, A.2    Moganty, R.R.3
  • 25
    • 84903883503 scopus 로고    scopus 로고
    • Conformational stability of OXA-51 β-lactamase explains its role in carbapenem resistance of Acinetobacter baumannii
    • Tiwari, V., and Moganty, R. R. (2014). Conformational stability of OXA-51 β-lactamase explains its role in carbapenem resistance of Acinetobacter baumannii. J. Biomol. Struct. Dyn. 32, 1406-1420. doi: 10.1080/07391102.2013.819789
    • (2014) J. Biomol. Struct. Dyn , vol.32 , pp. 1406-1420
    • Tiwari, V.1    Moganty, R.R.2
  • 26
    • 84875175232 scopus 로고    scopus 로고
    • Complete sequence of the IncT-type plasmid pT-OXA-181 carrying the blaOXA-181 carbapenemase gene from Citrobacter freundii
    • Villa, L., Carattoli, A., Nordmann, P., Carta, C., and Poirel, L. (2013). Complete sequence of the IncT-type plasmid pT-OXA-181 carrying the blaOXA-181 carbapenemase gene from Citrobacter freundii. Antimicrob. Agents Chemother. 57, 1965-1967. doi: 10.1128/AAC.01297-12
    • (2013) Antimicrob. Agents Chemother , vol.57 , pp. 1965-1967
    • Villa, L.1    Carattoli, A.2    Nordmann, P.3    Carta, C.4    Poirel, L.5
  • 27
    • 84862699980 scopus 로고    scopus 로고
    • Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes
    • Villa, L., Poirel, L., Nordmann, P., Carta, C., and Carattoli, A. (2012). Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes. J. Antimicrob. Chemother. 67, 1645-1650. doi: 10.1093/jac/dks114
    • (2012) J. Antimicrob. Chemother , vol.67 , pp. 1645-1650
    • Villa, L.1    Poirel, L.2    Nordmann, P.3    Carta, C.4    Carattoli, A.5
  • 28
    • 84942862350 scopus 로고    scopus 로고
    • The emergence of Enterobacter cloacae producing both KPC and NDM carbapenemases: characterization by whole genome sequencing
    • AAC.1275-15
    • Wu, W., Feng, Y., Carattoli, A., and Zong, Z. (2015). The emergence of Enterobacter cloacae producing both KPC and NDM carbapenemases: characterization by whole genome sequencing. Antimicrob. Agents Chemother. AAC.1275-15. doi: 10.1128/AAC.01275-15
    • (2015) Antimicrob. Agents Chemother
    • Wu, W.1    Feng, Y.2    Carattoli, A.3    Zong, Z.4
  • 29
    • 33645774649 scopus 로고    scopus 로고
    • First isolation of blaIMI-2 in an Enterobacter cloacae clinical isolate from China
    • Yu, Y. S., Du, X. X., Zhou, Z. H., Chen, Y. G., and Li, L. J. (2006). First isolation of blaIMI-2 in an Enterobacter cloacae clinical isolate from China. Antimicrob. Agents Chemother. 50, 1610-1611. doi: 10.1128/AAC.50.4.1610-1611.2006
    • (2006) Antimicrob. Agents Chemother , vol.50 , pp. 1610-1611
    • Yu, Y.S.1    Du, X.X.2    Zhou, Z.H.3    Chen, Y.G.4    Li, L.J.5
  • 30
    • 79953240174 scopus 로고    scopus 로고
    • Occurrence, abundance, and diversity of tetracycline resistance genes in 15 sewage treatment plants across China and other global locations
    • Zhang, X. X., and Zhang, T. (2011). Occurrence, abundance, and diversity of tetracycline resistance genes in 15 sewage treatment plants across China and other global locations. Environ. Sci. Technol. 45, 2598-2604. doi: 10.1021/es103672x
    • (2011) Environ. Sci. Technol , vol.45 , pp. 2598-2604
    • Zhang, X.X.1    Zhang, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.