-
1
-
-
84863045982
-
Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
-
Salzman J., et al. Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS ONE 2012, 7:e30733.
-
(2012)
PLoS ONE
, vol.7
-
-
Salzman, J.1
-
2
-
-
84900322651
-
Detecting and characterizing circular RNAs
-
Jeck W.R., Sharpless N.E. Detecting and characterizing circular RNAs. Nat. Biotechnol. 2014, 32:453-461.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 453-461
-
-
Jeck, W.R.1
Sharpless, N.E.2
-
3
-
-
84911491114
-
Circular RNAs: diversity of form and function
-
Lasda E., Parker R. Circular RNAs: diversity of form and function. RNA 2014, 20:1829-1842.
-
(2014)
RNA
, vol.20
, pp. 1829-1842
-
-
Lasda, E.1
Parker, R.2
-
4
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak S., et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 2013, 495:333-338.
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
-
5
-
-
84872531655
-
Circular RNAs are abundant, conserved, and associated with ALU repeats
-
Jeck W.R., et al. Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 2013, 19:141-157.
-
(2013)
RNA
, vol.19
, pp. 141-157
-
-
Jeck, W.R.1
-
6
-
-
84897568165
-
Circular RNA is expressed across the eukaryotic tree of life
-
Wang P.L., et al. Circular RNA is expressed across the eukaryotic tree of life. PLoS ONE 2014, 9:e90859.
-
(2014)
PLoS ONE
, vol.9
-
-
Wang, P.L.1
-
7
-
-
84947437842
-
Transcriptome-wide investigation of circular RNAs in rice
-
Lu T., et al. Transcriptome-wide investigation of circular RNAs in rice. RNA 2015, 21:2076-2087.
-
(2015)
RNA
, vol.21
, pp. 2076-2087
-
-
Lu, T.1
-
8
-
-
84931274433
-
Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
-
Broadbent K.M., et al. Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA. BMC Genomics 2015, 16:454.
-
(2015)
BMC Genomics
, vol.16
, pp. 454
-
-
Broadbent, K.M.1
-
9
-
-
84933041690
-
Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
-
Szabo L., et al. Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development. Genome Biol. 2015, 16:126.
-
(2015)
Genome Biol.
, vol.16
, pp. 126
-
-
Szabo, L.1
-
10
-
-
84884687363
-
Cell-type specific regulation of circular RNA expression
-
Salzman J., et al. Cell-type specific regulation of circular RNA expression. PLoS Genet. 2013, 9:e1003777.
-
(2013)
PLoS Genet.
, vol.9
-
-
Salzman, J.1
-
11
-
-
84911476411
-
CircRNA biogenesis competes with pre-mRNA splicing
-
Ashwal-Fluss R., et al. circRNA biogenesis competes with pre-mRNA splicing. Mol. Cell 2014, 56:55-66.
-
(2014)
Mol. Cell
, vol.56
, pp. 55-66
-
-
Ashwal-Fluss, R.1
-
12
-
-
84915820022
-
Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
-
Westholm J.M., et al. Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation. Cell Rep. 2014, 9:1966-1980.
-
(2014)
Cell Rep.
, vol.9
, pp. 1966-1980
-
-
Westholm, J.M.1
-
13
-
-
84924599473
-
The RNA binding protein quaking regulates formation of circRNAs
-
Conn S.J., et al. The RNA binding protein quaking regulates formation of circRNAs. Cell 2015, 160:1125-1134.
-
(2015)
Cell
, vol.160
, pp. 1125-1134
-
-
Conn, S.J.1
-
14
-
-
84944768846
-
Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins
-
Kramer M.C., et al. Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015, 29:2168-2182.
-
(2015)
Genes Dev.
, vol.29
, pp. 2168-2182
-
-
Kramer, M.C.1
-
15
-
-
0018578591
-
Electron microscopic evidence for the circular form of RNA in the cytoplasm of eukaryotic cells
-
Coca-Prados M., Hsu M-T. Electron microscopic evidence for the circular form of RNA in the cytoplasm of eukaryotic cells. Nature 1979, 280:339-340.
-
(1979)
Nature
, vol.280
, pp. 339-340
-
-
Coca-Prados, M.1
Hsu, M.-T.2
-
16
-
-
0025976493
-
Scrambled exons
-
Nigro J.M., et al. Scrambled exons. Cell 1991, 64:607-613.
-
(1991)
Cell
, vol.64
, pp. 607-613
-
-
Nigro, J.M.1
-
17
-
-
0026583748
-
Splicing with inverted order of exons occurs proximal to large introns
-
Cocquerelle C., et al. Splicing with inverted order of exons occurs proximal to large introns. EMBO J. 1992, 11:1095-1098.
-
(1992)
EMBO J.
, vol.11
, pp. 1095-1098
-
-
Cocquerelle, C.1
-
18
-
-
0026907070
-
A 3' consensus splice mutation in the human dystrophin gene detected by a screening for intra-exonic deletions
-
Saad F.A., et al. A 3' consensus splice mutation in the human dystrophin gene detected by a screening for intra-exonic deletions. Hum. Mol. Genet. 1992, 1:345-346.
-
(1992)
Hum. Mol. Genet.
, vol.1
, pp. 345-346
-
-
Saad, F.A.1
-
19
-
-
0029920641
-
During in vivo maturation of eukaryotic nuclear mRNA, splicing yields excised exon circles
-
Bailleul B. During in vivo maturation of eukaryotic nuclear mRNA, splicing yields excised exon circles. Nucleic Acids Res. 1996, 24:1015-1019.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1015-1019
-
-
Bailleul, B.1
-
20
-
-
0030946966
-
Exon skipping and circular RNA formation in transcripts of the human cytochrome P-450 2C18 gene in epidermis and of the rat androgen binding protein gene in testis
-
Zaphiropoulos P. Exon skipping and circular RNA formation in transcripts of the human cytochrome P-450 2C18 gene in epidermis and of the rat androgen binding protein gene in testis. Mol. Cell. Biol. 1997, 2985-2993.
-
(1997)
Mol. Cell. Biol.
, pp. 2985-2993
-
-
Zaphiropoulos, P.1
-
21
-
-
80455143733
-
MiRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
-
Hansen T.B., et al. miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. EMBO J. 2011, 30:4414-4422.
-
(2011)
EMBO J.
, vol.30
, pp. 4414-4422
-
-
Hansen, T.B.1
-
22
-
-
78650696753
-
Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk
-
Burd C.E., et al. Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk. PLoS Genet. 2010, 6:e1001233.
-
(2010)
PLoS Genet.
, vol.6
-
-
Burd, C.E.1
-
23
-
-
0025243412
-
Expression of a candidate sex-determining gene during mouse testis differentiation
-
Koopman P., et al. Expression of a candidate sex-determining gene during mouse testis differentiation. Nature 1990, 348:450-452.
-
(1990)
Nature
, vol.348
, pp. 450-452
-
-
Koopman, P.1
-
24
-
-
84875372911
-
Natural RNA circles function as efficient microRNA sponges
-
Hansen T.B., et al. Natural RNA circles function as efficient microRNA sponges. Nature 2013, 495:384-388.
-
(2013)
Nature
, vol.495
, pp. 384-388
-
-
Hansen, T.B.1
-
25
-
-
84956906428
-
Expanded identification and characterization of mammalian circular RNAs
-
Guo J.U., et al. Expanded identification and characterization of mammalian circular RNAs. Genome Biol. 2014, 15:409.
-
(2014)
Genome Biol.
, vol.15
, pp. 409
-
-
Guo, J.U.1
-
26
-
-
0027158771
-
Circular transcripts of the testis-determining gene Sry in adult mouse testis
-
Capel B., et al. Circular transcripts of the testis-determining gene Sry in adult mouse testis. Cell 1993, 73:1019-1030.
-
(1993)
Cell
, vol.73
, pp. 1019-1030
-
-
Capel, B.1
-
27
-
-
0031053705
-
Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation
-
Nam K., et al. Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation. Mol. Cell. Biol. 1997, 17:809-818.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 809-818
-
-
Nam, K.1
-
28
-
-
33745641056
-
Noncanonical RNAs from transcripts of the Drosophila muscleblind gene
-
Houseley J.M., et al. Noncanonical RNAs from transcripts of the Drosophila muscleblind gene. J. Heredity 2006, 97:253-260.
-
(2006)
J. Heredity
, vol.97
, pp. 253-260
-
-
Houseley, J.M.1
-
29
-
-
0033583194
-
A circularized sodium-calcium exchanger exon 2 transcript
-
Lytton J., Li X-F. A circularized sodium-calcium exchanger exon 2 transcript. J. Biol. Chem. 1999, 274:8153-8160.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 8153-8160
-
-
Lytton, J.1
Li, X.-F.2
-
30
-
-
84901058433
-
A survey of software for genome-wide discovery of differential splicing in RNA-Seq data
-
Hooper J.E. A survey of software for genome-wide discovery of differential splicing in RNA-Seq data. Hum. Genomics 2014, 8:3.
-
(2014)
Hum. Genomics
, vol.8
, pp. 3
-
-
Hooper, J.E.1
-
31
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr M.G., et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 2011, 29:644-652.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
-
32
-
-
84930194977
-
Hypothesis: artifacts, including spurious chimeric RNAs with a short homologous sequence, caused by consecutive reverse transcriptions and endogenous random primers
-
Peng Z., et al. Hypothesis: artifacts, including spurious chimeric RNAs with a short homologous sequence, caused by consecutive reverse transcriptions and endogenous random primers. J. Cancer 2015, 6:555-567.
-
(2015)
J. Cancer
, vol.6
, pp. 555-567
-
-
Peng, Z.1
-
33
-
-
80053330506
-
ESRRA-C11orf20 is a recurrent gene fusion in serous ovarian carcinoma
-
Salzman J., et al. ESRRA-C11orf20 is a recurrent gene fusion in serous ovarian carcinoma. PLoS Biol. 2011, 9:e1001156.
-
(2011)
PLoS Biol.
, vol.9
-
-
Salzman, J.1
-
34
-
-
33749578566
-
Substrate recognition and catalysis by the exoribonuclease RNase R
-
Vincent H.A., Deutscher M.P. Substrate recognition and catalysis by the exoribonuclease RNase R. J. Biol. Chem. 2006, 281:29769-29775.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 29769-29775
-
-
Vincent, H.A.1
Deutscher, M.P.2
-
35
-
-
33748796735
-
Origins and evolution of spliceosomal introns
-
Rodriguez-Trelles F., et al. Origins and evolution of spliceosomal introns. Annu. Rev. Genet. 2006, 40:47-76.
-
(2006)
Annu. Rev. Genet.
, vol.40
, pp. 47-76
-
-
Rodriguez-Trelles, F.1
-
36
-
-
84862628951
-
Fus/TLS orchestrates splicing of developmental regulators during gastrulation
-
Dichmann D.S., Harland R.M. fus/TLS orchestrates splicing of developmental regulators during gastrulation. Genes Dev. 2012, 26:1351-1363.
-
(2012)
Genes Dev.
, vol.26
, pp. 1351-1363
-
-
Dichmann, D.S.1
Harland, R.M.2
-
37
-
-
84920460444
-
Detained introns are a novel, widespread class of post-transcriptionally spliced introns
-
Boutz P.L., et al. Detained introns are a novel, widespread class of post-transcriptionally spliced introns. Genes Dev. 2015, 29:63-80.
-
(2015)
Genes Dev.
, vol.29
, pp. 63-80
-
-
Boutz, P.L.1
-
38
-
-
0037422575
-
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
-
Lewis B.P., et al. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:189-192.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 189-192
-
-
Lewis, B.P.1
-
39
-
-
84926197829
-
Non-coding RNA: circular RNAs promote transcription
-
Zlotorynski E. Non-coding RNA: circular RNAs promote transcription. Nat. Rev. Mol. Cell Biol. 2015, 16:206.
-
(2015)
Nat. Rev. Mol. Cell Biol.
, vol.16
, pp. 206
-
-
Zlotorynski, E.1
-
40
-
-
84884566546
-
Circular intronic long noncoding RNAs
-
Zhang Y., et al. Circular intronic long noncoding RNAs. Mol. Cell 2013, 51:792-806.
-
(2013)
Mol. Cell
, vol.51
, pp. 792-806
-
-
Zhang, Y.1
-
41
-
-
0034625260
-
Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity
-
Schmucker D., et al. Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity. Cell 2000, 101:671-684.
-
(2000)
Cell
, vol.101
, pp. 671-684
-
-
Schmucker, D.1
-
42
-
-
84897528076
-
Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing
-
Treutlein B., et al. Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:E1291-E1299.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E1291-E1299
-
-
Treutlein, B.1
-
43
-
-
84907301397
-
Single-cell identity generated by combinatorial homophilic interactions between alpha, beta, and gamma protocadherins
-
Thu C.A., et al. Single-cell identity generated by combinatorial homophilic interactions between alpha, beta, and gamma protocadherins. Cell 2014, 158:1045-1059.
-
(2014)
Cell
, vol.158
, pp. 1045-1059
-
-
Thu, C.A.1
-
44
-
-
84908122717
-
Alternative splicing: characterizing cell fate
-
Lokody I. Alternative splicing: characterizing cell fate. Nat. Rev. Genet. 2014, 15:706.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 706
-
-
Lokody, I.1
-
45
-
-
84937629100
-
Exon skipping is correlated with exon circularization
-
Kelly S., et al. Exon skipping is correlated with exon circularization. J. Mol. Biol. 2015, 427:2414-2417.
-
(2015)
J. Mol. Biol.
, vol.427
, pp. 2414-2417
-
-
Kelly, S.1
-
46
-
-
0031892938
-
Sex in the 90s: SRY and the switch to the male pathway
-
Capel B. Sex in the 90s: SRY and the switch to the male pathway. Annu. Rev. Physiol. 1998, 60:497-523.
-
(1998)
Annu. Rev. Physiol.
, vol.60
, pp. 497-523
-
-
Capel, B.1
-
47
-
-
84920917407
-
Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals
-
Ivanov A., et al. Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals. Cell Rep. 2015, 10:170-177.
-
(2015)
Cell Rep.
, vol.10
, pp. 170-177
-
-
Ivanov, A.1
-
48
-
-
84908093894
-
Short intronic repeat sequences facilitate circular RNA production
-
Liang D., Wilusz J.E. Short intronic repeat sequences facilitate circular RNA production. Genes Dev. 2014, 28:2233-2247.
-
(2014)
Genes Dev.
, vol.28
, pp. 2233-2247
-
-
Liang, D.1
Wilusz, J.E.2
-
49
-
-
84920923470
-
Exon circularization requires canonical splice signals
-
Starke S., et al. Exon circularization requires canonical splice signals. Cell Rep. 2015, 10:103-111.
-
(2015)
Cell Rep.
, vol.10
, pp. 103-111
-
-
Starke, S.1
-
50
-
-
85013339773
-
Circular RNA biogenesis can proceed through an exon-containing lariat precursor
-
Barrett S.P., et al. Circular RNA biogenesis can proceed through an exon-containing lariat precursor. Elife 2015, 4:e07540.
-
(2015)
Elife
, vol.4
-
-
Barrett, S.P.1
-
51
-
-
0030782210
-
Identification of a promoter region generating Sry circular transcripts both in germ cells from male adult mice and in male mouse embryonal gonads
-
Dolci S., et al. Identification of a promoter region generating Sry circular transcripts both in germ cells from male adult mice and in male mouse embryonal gonads. Biol. Reprod. 1997, 57:1128-1135.
-
(1997)
Biol. Reprod.
, vol.57
, pp. 1128-1135
-
-
Dolci, S.1
-
52
-
-
84949238604
-
Identification and characterization of circular RNAs as a new class of putative biomarkers in human blood
-
Memczak S., et al. Identification and characterization of circular RNAs as a new class of putative biomarkers in human blood. PLoS ONE 2015, 10:e0141214.
-
(2015)
PLoS ONE
, vol.10
-
-
Memczak, S.1
-
53
-
-
84907509527
-
Complementary sequence-mediated exon circularization
-
Zhang X.O., et al. Complementary sequence-mediated exon circularization. Cell 2014, 159:134-147.
-
(2014)
Cell
, vol.159
, pp. 134-147
-
-
Zhang, X.O.1
-
54
-
-
84925773568
-
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
-
You X., et al. Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity. Nat. Neurosci. 2015, 18:603-610.
-
(2015)
Nat. Neurosci.
, vol.18
, pp. 603-610
-
-
You, X.1
-
55
-
-
84946544407
-
Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development
-
Veno M.T., et al. Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development. Genome Biol. 2015, 16:245.
-
(2015)
Genome Biol.
, vol.16
, pp. 245
-
-
Veno, M.T.1
-
56
-
-
84939419124
-
Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed
-
Rybak-Wolf A., et al. Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed. Mol. Cell 2015, 58:870-885.
-
(2015)
Mol. Cell
, vol.58
, pp. 870-885
-
-
Rybak-Wolf, A.1
-
57
-
-
0030725752
-
Muscleblind, a gene required for photoreceptor differentiation in Drosophila, encodes novel nuclear Cys3His-type zinc-finger-containing proteins
-
Begemann G., et al. muscleblind, a gene required for photoreceptor differentiation in Drosophila, encodes novel nuclear Cys3His-type zinc-finger-containing proteins. Development 1997, 124:4321-4331.
-
(1997)
Development
, vol.124
, pp. 4321-4331
-
-
Begemann, G.1
-
58
-
-
84915820022
-
Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
-
Westholm J.O., et al. Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation. Cell Rep. 2014, 9:1966-1980.
-
(2014)
Cell Rep.
, vol.9
, pp. 1966-1980
-
-
Westholm, J.O.1
-
59
-
-
84960421444
-
Circular RNA enrichment in platelets is a signature of transcriptome degradation
-
Alhasan A.A., et al. Circular RNA enrichment in platelets is a signature of transcriptome degradation. Blood 2015, 127:e1-e11.
-
(2015)
Blood
, vol.127
, pp. 1-e11
-
-
Alhasan, A.A.1
-
60
-
-
84938747588
-
Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis
-
Li Y., et al. Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis. Cell Res. 2015, 25:981-984.
-
(2015)
Cell Res.
, vol.25
, pp. 981-984
-
-
Li, Y.1
-
61
-
-
84949870493
-
Foxo3 activity promoted by non-coding effects of circular RNA and Foxo3 pseudogene in the inhibition of tumor growth and angiogenesis
-
Published online December 14, 2015
-
Yang W., et al. Foxo3 activity promoted by non-coding effects of circular RNA and Foxo3 pseudogene in the inhibition of tumor growth and angiogenesis. Oncogene 2015, Published online December 14, 2015. 10.1038/onc.2015.460.
-
(2015)
Oncogene
-
-
Yang, W.1
|