-
1
-
-
84911476411
-
CircRNA biogenesis competes with pre-mRNA splicing
-
Ashwal-Fluss R., Meyer M., Pamudurti N.R., Ivanov A., Bartok O., Hanan M., Evantal N., Memczak S., Rajewsky N., Kadener S. circRNA biogenesis competes with pre-mRNA splicing. Mol. Cell 2014, 56:55-66.
-
(2014)
Mol. Cell
, vol.56
, pp. 55-66
-
-
Ashwal-Fluss, R.1
Meyer, M.2
Pamudurti, N.R.3
Ivanov, A.4
Bartok, O.5
Hanan, M.6
Evantal, N.7
Memczak, S.8
Rajewsky, N.9
Kadener, S.10
-
2
-
-
78650696753
-
Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk
-
Burd C.E., Jeck W.R., Liu Y., Sanoff H.K., Wang Z., Sharpless N.E. Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk. PLoS Genet. 2010, 6:e1001233.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001233
-
-
Burd, C.E.1
Jeck, W.R.2
Liu, Y.3
Sanoff, H.K.4
Wang, Z.5
Sharpless, N.E.6
-
3
-
-
0027158771
-
Circular transcripts of the testis-determining gene Sry in adult mouse testis
-
Capel B., Swain A., Nicolis S., Hacker A., Walter M., Koopman P., Goodfellow P., Lovell-Badge R. Circular transcripts of the testis-determining gene Sry in adult mouse testis. Cell 1993, 73:1019-1030.
-
(1993)
Cell
, vol.73
, pp. 1019-1030
-
-
Capel, B.1
Swain, A.2
Nicolis, S.3
Hacker, A.4
Walter, M.5
Koopman, P.6
Goodfellow, P.7
Lovell-Badge, R.8
-
4
-
-
78649684957
-
Genome-wide association between branch point properties and alternative splicing
-
Corvelo A., Hallegger M., Smith C.W., Eyras E. Genome-wide association between branch point properties and alternative splicing. PLoS Comput. Biol. 2010, 6:e1001016.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1001016
-
-
Corvelo, A.1
Hallegger, M.2
Smith, C.W.3
Eyras, E.4
-
5
-
-
84860171056
-
Transcriptome-wide discovery of circular RNAs in Archaea
-
Danan M., Schwartz S., Edelheit S., Sorek R. Transcriptome-wide discovery of circular RNAs in Archaea. Nucleic Acids Res. 2012, 40:3131-3142.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3131-3142
-
-
Danan, M.1
Schwartz, S.2
Edelheit, S.3
Sorek, R.4
-
6
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin A., Davis C.A., Schlesinger F., Drenkow J., Zaleski C., Jha S., Batut P., Chaisson M., Gingeras T.R. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 2013, 29:15-21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
7
-
-
50649118115
-
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
-
Dölken L., Ruzsics Z., Rädle B., Friedel C.C., Zimmer R., Mages J., Hoffmann R., Dickinson P., Forster T., Ghazal P., Koszinowski U.H. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 2008, 14:1959-1972.
-
(2008)
RNA
, vol.14
, pp. 1959-1972
-
-
Dölken, L.1
Ruzsics, Z.2
Rädle, B.3
Friedel, C.C.4
Zimmer, R.5
Mages, J.6
Hoffmann, R.7
Dickinson, P.8
Forster, T.9
Ghazal, P.10
Koszinowski, U.H.11
-
8
-
-
0029585914
-
Inverted repeats are necessary for circularization of the mouse testis Sry transcript
-
Dubin R.A., Kazmi M.A., Ostrer H. Inverted repeats are necessary for circularization of the mouse testis Sry transcript. Gene 1995, 167:245-248.
-
(1995)
Gene
, vol.167
, pp. 245-248
-
-
Dubin, R.A.1
Kazmi, M.A.2
Ostrer, H.3
-
9
-
-
84908128765
-
CircBase: a database for circular RNAs
-
Glažar P., Papavasileiou P., Rajewsky N. circBase: a database for circular RNAs. RNA 2014, 20:1666-1670.
-
(2014)
RNA
, vol.20
, pp. 1666-1670
-
-
Glažar, P.1
Papavasileiou, P.2
Rajewsky, N.3
-
10
-
-
84956906428
-
Expanded identification and characterization of mammalian circular RNAs
-
Guo J.U., Agarwal V., Guo H., Bartel D.P. Expanded identification and characterization of mammalian circular RNAs. Genome Biol. 2014, 15:409.
-
(2014)
Genome Biol.
, vol.15
, pp. 409
-
-
Guo, J.U.1
Agarwal, V.2
Guo, H.3
Bartel, D.P.4
-
11
-
-
80455143733
-
MiRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
-
Hansen T.B., Wiklund E.D., Bramsen J.B., Villadsen S.B., Statham A.L., Clark S.J., Kjems J. miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. EMBO J. 2011, 30:4414-4422.
-
(2011)
EMBO J.
, vol.30
, pp. 4414-4422
-
-
Hansen, T.B.1
Wiklund, E.D.2
Bramsen, J.B.3
Villadsen, S.B.4
Statham, A.L.5
Clark, S.J.6
Kjems, J.7
-
12
-
-
84875372911
-
Natural RNA circles function as efficient microRNA sponges
-
Hansen T.B., Jensen T.I., Clausen B.H., Bramsen J.B., Finsen B., Damgaard C.K., Kjems J. Natural RNA circles function as efficient microRNA sponges. Nature 2013, 495:384-388.
-
(2013)
Nature
, vol.495
, pp. 384-388
-
-
Hansen, T.B.1
Jensen, T.I.2
Clausen, B.H.3
Bramsen, J.B.4
Finsen, B.5
Damgaard, C.K.6
Kjems, J.7
-
13
-
-
84875962753
-
Circular RNAs: splicing's enigma variations
-
Hentze M.W., Preiss T. Circular RNAs: splicing's enigma variations. EMBO J. 2013, 32:923-925.
-
(2013)
EMBO J.
, vol.32
, pp. 923-925
-
-
Hentze, M.W.1
Preiss, T.2
-
14
-
-
77957893329
-
Apparent non-canonical trans-splicing is generated by reverse transcriptase invitro
-
Houseley J., Tollervey D. Apparent non-canonical trans-splicing is generated by reverse transcriptase invitro. PLoS ONE 2010, 5:e12271.
-
(2010)
PLoS ONE
, vol.5
, pp. e12271
-
-
Houseley, J.1
Tollervey, D.2
-
15
-
-
84881170769
-
Production of ACAT1 56-kDa isoform in human cells via trans-splicing involving the ampicillin resistance gene
-
Hu G.J., Chen J., Zhao X.N., Xu J.J., Guo D.Q., Lu M., Zhu M., Xiong Y., Li Q., Chang C.C., et al. Production of ACAT1 56-kDa isoform in human cells via trans-splicing involving the ampicillin resistance gene. Cell Res. 2013, 23:1007-1024.
-
(2013)
Cell Res.
, vol.23
, pp. 1007-1024
-
-
Hu, G.J.1
Chen, J.2
Zhao, X.N.3
Xu, J.J.4
Guo, D.Q.5
Lu, M.6
Zhu, M.7
Xiong, Y.8
Li, Q.9
Chang, C.C.10
-
16
-
-
84920917407
-
Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals
-
Published online December 31, 2014
-
Ivanov A., Memczak S., Wyler E., Torti F., Porath H., Orejuela M., Piechotta M., Levanon E., Landthaler M., Dieterich C., Rajewsky N. Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals. Cell Rep. 2014, 10. Published online December 31, 2014. 10.1016/j.celrep.2014.12.019.
-
(2014)
Cell Rep.
, vol.10
-
-
Ivanov, A.1
Memczak, S.2
Wyler, E.3
Torti, F.4
Porath, H.5
Orejuela, M.6
Piechotta, M.7
Levanon, E.8
Landthaler, M.9
Dieterich, C.10
Rajewsky, N.11
-
17
-
-
84872531655
-
Circular RNAs are abundant, conserved, and associated with ALU repeats
-
Jeck W.R., Sorrentino J.A., Wang K., Slevin M.K., Burd C.E., Liu J., Marzluff W.F., Sharpless N.E. Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 2013, 19:141-157.
-
(2013)
RNA
, vol.19
, pp. 141-157
-
-
Jeck, W.R.1
Sorrentino, J.A.2
Wang, K.3
Slevin, M.K.4
Burd, C.E.5
Liu, J.6
Marzluff, W.F.7
Sharpless, N.E.8
-
18
-
-
0023724432
-
Novel splicing mechanism for the ribosomal RNA intron in the archaebacterium Desulfurococcus mobilis
-
Kjems J., Garrett R.A. Novel splicing mechanism for the ribosomal RNA intron in the archaebacterium Desulfurococcus mobilis. Cell 1988, 54:693-703.
-
(1988)
Cell
, vol.54
, pp. 693-703
-
-
Kjems, J.1
Garrett, R.A.2
-
19
-
-
59849091728
-
Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes
-
Li X., Zhao L., Jiang H., Wang W. Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes. J.Mol. Evol. 2009, 68:56-65.
-
(2009)
J.Mol. Evol.
, vol.68
, pp. 56-65
-
-
Li, X.1
Zhao, L.2
Jiang, H.3
Wang, W.4
-
20
-
-
84908093894
-
Short intronic repeat sequences facilitate circular RNA production
-
Liang D., Wilusz J.E. Short intronic repeat sequences facilitate circular RNA production. Genes Dev. 2014, 28:2233-2247.
-
(2014)
Genes Dev.
, vol.28
, pp. 2233-2247
-
-
Liang, D.1
Wilusz, J.E.2
-
21
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak S., Jens M., Elefsinioti A., Torti F., Krueger J., Rybak A., Maier L., Mackowiak S.D., Gregersen L.H., Munschauer M., et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 2013, 495:333-338.
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
Jens, M.2
Elefsinioti, A.3
Torti, F.4
Krueger, J.5
Rybak, A.6
Maier, L.7
Mackowiak, S.D.8
Gregersen, L.H.9
Munschauer, M.10
-
22
-
-
57749093482
-
The biflavonoid isoginkgetin is a general inhibitor of Pre-mRNA splicing
-
O'Brien K., Matlin A.J., Lowell A.M., Moore M.J. The biflavonoid isoginkgetin is a general inhibitor of Pre-mRNA splicing. J.Biol. Chem. 2008, 283:33147-33154.
-
(2008)
J.Biol. Chem.
, vol.283
, pp. 33147-33154
-
-
O'Brien, K.1
Matlin, A.J.2
Lowell, A.M.3
Moore, M.J.4
-
23
-
-
0029944946
-
Exon circularization in mammalian nuclear extracts
-
Pasman Z., Been M.D., Garcia-Blanco M.A. Exon circularization in mammalian nuclear extracts. RNA 1996, 2:603-610.
-
(1996)
RNA
, vol.2
, pp. 603-610
-
-
Pasman, Z.1
Been, M.D.2
Garcia-Blanco, M.A.3
-
24
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:e45.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. e45
-
-
Pfaffl, M.W.1
-
25
-
-
0017180370
-
Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures
-
Sänger H.L., Klotz G., Riesner D., Gross H.J., Kleinschmidt A.K. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc. Natl. Acad. Sci. USA 1976, 73:3852-3856.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 3852-3856
-
-
Sänger, H.L.1
Klotz, G.2
Riesner, D.3
Gross, H.J.4
Kleinschmidt, A.K.5
-
26
-
-
2442441507
-
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
-
Yeo G., Burge C.B. Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. J.Comput. Biol. 2004, 11:377-394.
-
(2004)
J.Comput. Biol.
, vol.11
, pp. 377-394
-
-
Yeo, G.1
Burge, C.B.2
-
27
-
-
84907509527
-
Complementary sequence-mediated exon circularization
-
Zhang X.O., Wang H.B., Zhang Y., Lu X., Chen L.L., Yang L. Complementary sequence-mediated exon circularization. Cell 2014, 159:134-147.
-
(2014)
Cell
, vol.159
, pp. 134-147
-
-
Zhang, X.O.1
Wang, H.B.2
Zhang, Y.3
Lu, X.4
Chen, L.L.5
Yang, L.6
|