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Volumn 392, Issue , 2016, Pages 61-120

Quasispecies on fitness landscapes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; AMPLICON; CHEMICAL STRUCTURE; DNA SEQUENCE; EPISTASIS; ESCHERICHIA COLI; GENOTYPE; HUMAN IMMUNODEFICIENCY VIRUS 1; IONIC STRENGTH; METHYLOBACTERIUM EXTORQUENS; MOLECULAR DYNAMICS; NATURAL SELECTION; NONHUMAN; PH; PHENOMENOLOGY; POINT MUTATION; POPULATION DYNAMICS; PRIORITY JOURNAL; QUASISPECIES; RNA REPLICATION; RNA SEQUENCE; SPECIES IDENTIFICATION; STOCHASTIC MODEL; BIODIVERSITY; BIOLOGICAL MODEL; CHEMISTRY; CONFORMATION; GENETICS; MOLECULAR EVOLUTION; MUTATION; VIRUS;

EID: 84961629094     PISSN: 0070217X     EISSN: 21969965     Source Type: Book Series    
DOI: 10.1007/82_2015_469     Document Type: Chapter
Times cited : (39)

References (113)
  • 1
    • 0038763997 scopus 로고    scopus 로고
    • NK fitness landscapes
    • In: Bäck T, Fogel DB, Michalevicz Z, chapter B 2.7.2. Oxford University Press, Oxford, UK, pp 2.7.5–2.7.10
    • Altenberg L (1997) NK fitness landscapes. In: Bäck T, Fogel DB, Michalevicz Z (eds) Handbook of evlutionary computation, chapter B 2.7.2. Oxford University Press, Oxford, UK, pp 2.7.5–2.7.10
    • (1997) Handbook of Evlutionary Computation
    • Altenberg, L.1
  • 2
    • 38049021986 scopus 로고    scopus 로고
    • Kinetics of autocatalysis in small systems
    • Arslan E, Laurenzi IJ (2008) Kinetics of autocatalysis in small systems. J Chem Phys 128:e015101
    • (2008) J Chem Phys , vol.128
    • Arslan, E.1    Laurenzi, I.J.2
  • 3
    • 84907532641 scopus 로고    scopus 로고
    • Experimental fitness landscapes to understand the molecular evolution of RNA-based life
    • Athavale SS, Spicer B, Chen IA (2014) Experimental fitness landscapes to understand the molecular evolution of RNA-based life. Curr Opin Chem Biol 22:35–39
    • (2014) Curr Opin Chem Biol , vol.22 , pp. 35-39
    • Athavale, S.S.1    Spicer, B.2    Chen, I.A.3
  • 4
    • 0000307578 scopus 로고    scopus 로고
    • Ising quantum chain is equivalent to a model of biological evolution
    • Baake E, Baake M, Wagner H (1997) Ising quantum chain is equivalent to a model of biological evolution. Phys Rev Lett 78:559–562
    • (1997) Phys Rev Lett , vol.78 , pp. 559-562
    • Baake, E.1    Baake, M.2    Wagner, H.3
  • 5
    • 0001108223 scopus 로고    scopus 로고
    • Biological evolution through mutation, selection, and drift: An introductory review
    • In: Stauffer D, World Scientific, Singapore
    • Baake E, Gabriel W (1999) Biological evolution through mutation, selection, and drift: an introductory review. In: Stauffer D (ed) Annual review of computational physics VII. World Scientific, Singapore, pp 203–264
    • (1999) Annual Review of Computational Physics VII , pp. 203-264
    • Baake, E.1    Gabriel, W.2
  • 6
    • 0034890399 scopus 로고    scopus 로고
    • Mutation-selection models solved exactly with methods of statistical mechanics
    • Baake E, Wagner H (2001) Mutation-selection models solved exactly with methods of statistical mechanics. Genet Res Camb 78:93–117
    • (2001) Genet Res Camb , vol.78 , pp. 93-117
    • Baake, E.1    Wagner, H.2
  • 8
    • 33751106943 scopus 로고    scopus 로고
    • Fitness effects of beneficial mutations: The mutational landscape model in experimental evolution
    • Betancourt AJ, Bollback JP (2006) Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution. Curr Opin Genet Dev 16:618–623
    • (2006) Curr Opin Genet Dev , vol.16 , pp. 618-623
    • Betancourt, A.J.1    Bollback, J.P.2
  • 9
    • 0001980570 scopus 로고
    • Darwinian selection of self-replicating RNA molecules
    • In: Hecht MK, Wallace B, Prance GT, Plenum Publishing Corporation, New York
    • Biebricher CK (1983) Darwinian selection of self-replicating RNA molecules. In: Hecht MK, Wallace B, Prance GT (eds) Evolutionary biology, vol 16. Plenum Publishing Corporation, New York, pp 1–52
    • (1983) Evolutionary Biology , vol.16 , pp. 1-52
    • Biebricher, C.K.1
  • 11
    • 0021754248 scopus 로고
    • Kinetics of RNA replication: Plus-minus asymmetry and double-strand formation
    • Biebricher CK, Eigen M, William C, Gardiner J (1984) Kinetics of RNA replication: plus-minus asymmetry and double-strand formation. Biochemistry 23:3186–3194
    • (1984) Biochemistry , vol.23 , pp. 3186-3194
    • Biebricher, C.K.1    Eigen, M.2    William, C.3    Gardiner, J.4
  • 12
    • 0022384429 scopus 로고
    • Kinetics of RNA replication: Competition and selection among self-replicating RNA species
    • Biebricher CK, Eigen M, William C, Gardiner J (1985) Kinetics of RNA replication: competition and selection among self-replicating RNA species. Biochemistry 24:6550–6560
    • (1985) Biochemistry , vol.24 , pp. 6550-6560
    • Biebricher, C.K.1    Eigen, M.2    William, C.3    Gardiner, J.4
  • 13
    • 84908102212 scopus 로고    scopus 로고
    • Linear algebra of the permutation invariant Crow-Kimura model of prebiotic evolution
    • Bratus AS, Novozhilov AS, Semenov YS (2014) Linear algebra of the permutation invariant Crow-Kimura model of prebiotic evolution. Math Biosci 256:42–57
    • (2014) Math Biosci , vol.256 , pp. 42-57
    • Bratus, A.S.1    Novozhilov, A.S.2    Semenov, Y.S.3
  • 14
    • 7344226239 scopus 로고    scopus 로고
    • Mathematical properties of mutation-selection models
    • Bürger R (1998) Mathematical properties of mutation-selection models. Genetica 102(103):279–298
    • (1998) Genetica , vol.102 , Issue.103 , pp. 279-298
    • Bürger, R.1
  • 15
    • 0025079181 scopus 로고
    • Mutation-selection balance and the evolutionary advantage of sex and recombination
    • Charlesworth B (1990) Mutation-selection balance and the evolutionary advantage of sex and recombination. Genet Res Camb 55:199–221
    • (1990) Genet Res Camb , vol.55 , pp. 199-221
    • Charlesworth, B.1
  • 16
    • 84901742626 scopus 로고    scopus 로고
    • Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations
    • Chou H-H, Delaney NF, Draghi JA, Marx CJ (2014) Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations. PLoS Genet 10:e1004149
    • (2014) Plos Genet , vol.10
    • Chou, H.-H.1    Delaney, N.F.2    Draghi, J.A.3    Marx, C.J.4
  • 18
    • 0021780711 scopus 로고
    • Polynucleotide evolution and branching processes
    • Demetrius L, Schuster P, Sigmund K (1985) Polynucleotide evolution and branching processes. Bull Math Biol 47:239–262
    • (1985) Bull Math Biol , vol.47 , pp. 239-262
    • Demetrius, L.1    Schuster, P.2    Sigmund, K.3
  • 20
    • 34547484735 scopus 로고
    • Theory of spin glasses
    • Edwards SF, Anderson PW (1975) Theory of spin glasses. J Phys F 5:965–974
    • (1975) J Phys F , vol.5 , pp. 965-974
    • Edwards, S.F.1    Erson, P.W.2
  • 21
    • 0015133749 scopus 로고
    • Selforganization of matter and the evolution of biological macromolecules
    • Eigen M (1971) Selforganization of matter and the evolution of biological macromolecules. Naturwissenschaften 58:465–523
    • (1971) Naturwissenschaften , vol.58 , pp. 465-523
    • Eigen, M.1
  • 24
    • 0017667182 scopus 로고
    • The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle
    • Eigen M, Schuster P (1977) The hypercycle. A principle of natural self-organization. Part A: emergence of the hypercycle. Naturwissenschaften 64:541–565
    • (1977) Naturwissenschaften , vol.64 , pp. 541-565
    • Eigen, M.1    Schuster, P.2
  • 25
    • 0018085524 scopus 로고
    • The hypercycle. A principle of natural self-organization. Part B: The abstract hypercycle
    • Eigen M, Schuster P (1978) The hypercycle. A principle of natural self-organization. Part B: the abstract hypercycle. Naturwissenschaften 65:7–41
    • (1978) Naturwissenschaften , vol.65 , pp. 7-41
    • Eigen, M.1    Schuster, P.2
  • 26
    • 0020356301 scopus 로고
    • Stages of emerging life—five principles of early organization
    • Eigen M, Schuster P (1982) Stages of emerging life—five principles of early organization. J Mol Evol 19:47–61
    • (1982) J Mol Evol , vol.19 , pp. 47-61
    • Eigen, M.1    Schuster, P.2
  • 27
    • 37749019678 scopus 로고    scopus 로고
    • Virus evolution: Insights from an experimental approach
    • Elena SF, Sanjuán R (2007) Virus evolution: insights from an experimental approach. Annu Rev Ecol Evol Syst 58:27–52
    • (2007) Annu Rev Ecol Evol Syst , vol.58 , pp. 27-52
    • Elena, S.F.1    Sanjuán, R.2
  • 28
    • 0001540595 scopus 로고
    • On random graphs. I
    • Erdös P, Rényi A (1959) On random graphs. I. Publ Math 6:290–295
    • (1959) Publ Math , vol.6 , pp. 290-295
    • Erdös, P.1    Rényi, A.2
  • 30
    • 0002222865 scopus 로고
    • Average excess and average effect of a gene substitution
    • Fisher RA (1941) Average excess and average effect of a gene substitution. Ann Eugenics 11:53–63
    • (1941) Ann Eugenics , vol.11 , pp. 53-63
    • Fisher, R.A.1
  • 31
    • 0000647969 scopus 로고
    • Statistics of landscapes based od free energies, replication and degradation rate constants of RNA secondary structures
    • Fontana W, Griesmacher T, Schnabl W, Stadler PF, Schuster P (1991) Statistics of landscapes based od free energies, replication and degradation rate constants of RNA secondary structures. Mon Chem 122:795–819
    • (1991) Mon Chem , vol.122 , pp. 795-819
    • Fontana, W.1    Griesmacher, T.2    Schnabl, W.3    Stadler, P.F.4    Schuster, P.5
  • 33
    • 0000654132 scopus 로고
    • Physical aspects of evolutionary optimization and adaptation
    • Fontana W, Schnabl W, Schuster P (1989) Physical aspects of evolutionary optimization and adaptation. Phys Rev A 40:3301–3321
    • (1989) Phys Rev A , vol.40 , pp. 3301-3321
    • Fontana, W.1    Schnabl, W.2    Schuster, P.3
  • 34
    • 0023648965 scopus 로고
    • A computer model of evolutionary optimization
    • Fontana W, Schuster P (1987) A computer model of evolutionary optimization. Biophys Chem 26:123–147
    • (1987) Biophys Chem , vol.26 , pp. 123-147
    • Fontana, W.1    Schuster, P.2
  • 35
    • 0032577365 scopus 로고    scopus 로고
    • Continuity in evolution. On the nature of transitions
    • Fontana W, Schuster P (1998a) Continuity in evolution. On the nature of transitions. Science 280:1451–1455
    • (1998) Science , vol.280 , pp. 1451-1455
    • Fontana, W.1    Schuster, P.2
  • 36
    • 0032556237 scopus 로고    scopus 로고
    • Shaping space. The possible and the attainable in RNA genotype-phenotype mapping
    • Fontana W, Schuster P (1998b) Shaping space. The possible and the attainable in RNA genotype-phenotype mapping. J Theor Biol 194:491–515
    • (1998) J Theor Biol , vol.194 , pp. 491-515
    • Fontana, W.1    Schuster, P.2
  • 37
    • 62149152282 scopus 로고    scopus 로고
    • Extremely high mutation rate of a hammerhead viroid
    • Gago S, Elena SF, Flores R, Sanjuan R (2009) Extremely high mutation rate of a hammerhead viroid. Science 323:1308
    • (2009) Science , vol.323 , pp. 1308
    • Gago, S.1    Elena, S.F.2    Flores, R.3    Sanjuan, R.4
  • 38
    • 0000767918 scopus 로고    scopus 로고
    • Exact solution of the quasispecies model in a sharply peaked fitness landscape
    • Galluccio S (1997) Exact solution of the quasispecies model in a sharply peaked fitness landscape. Phys Rev E 56:4526–4539
    • (1997) Phys Rev E , vol.56 , pp. 4526-4539
    • Galluccio, S.1
  • 39
    • 0031284943 scopus 로고    scopus 로고
    • Evolution and speciation on holey adaptive landscapes
    • Gavrilets S (1997) Evolution and speciation on holey adaptive landscapes. Trends Ecol Evol 12:307–312
    • (1997) Trends Ecol Evol , vol.12 , pp. 307-312
    • Gavrilets, S.1
  • 40
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81:2340–2361
    • (1977) J Phys Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 41
    • 34249950625 scopus 로고    scopus 로고
    • Stochastic simulation of chemical kinetics
    • Gillespie DT (2007) Stochastic simulation of chemical kinetics. Annu Rev Phys Chem 58:35–55
    • (2007) Annu Rev Phys Chem , vol.58 , pp. 35-55
    • Gillespie, D.T.1
  • 43
    • 0039577307 scopus 로고    scopus 로고
    • Analysis of RNA sequence structure maps by exhaustive enumeration. II. Structures of neutral networks and shape space covering
    • Grüner W, Giegerich R, Strothmann D, Reidys C, Weber J, Hofacker IL, Schuster P (1996b) Analysis of RNA sequence structure maps by exhaustive enumeration. II. Structures of neutral networks and shape space covering. Mon Chem 127:375–389
    • (1996) Mon Chem , vol.127 , pp. 375-389
    • Grüner, W.1    Giegerich, R.2    Strothmann, D.3    Reidys, C.4    Weber, J.5    Hofacker, I.L.6    Schuster, P.7
  • 44
    • 84943817322 scopus 로고
    • Error detecting and error correcting codes
    • Hamming RW (1950) Error detecting and error correcting codes. Bell Syst Tech J 29:147–160
    • (1950) Bell Syst Tech J , vol.29 , pp. 147-160
    • Hamming, R.W.1
  • 46
    • 84919772565 scopus 로고    scopus 로고
    • Molecular-clock methods for estimating evolutionary rates and timescales
    • Ho SYW, Duchêne S (2014) Molecular-clock methods for estimating evolutionary rates and timescales. Mol Ecol 23:5947–5965
    • (2014) Mol Ecol , vol.23 , pp. 5947-5965
    • Ho, S.1    Duchêne, S.2
  • 48
    • 34848838094 scopus 로고    scopus 로고
    • Adaptation in simple and complex fitness landscapes
    • In: Bastolla U, Porto M, Eduardo Roman H, Vendruscolo M, Molecules, networks, populations, chapter 14. Springer, Berlin
    • Jain K, Krug J (2007) Adaptation in simple and complex fitness landscapes. In: Bastolla U, Porto M, Eduardo Roman H, Vendruscolo M (eds) Structural approaches to sequence evolution. Molecules, networks, populations, chapter 14. Springer, Berlin, pp 299–339
    • (2007) Structural Approaches to Sequence Evolution , pp. 299-339
    • Jain, K.1    Krug, J.2
  • 49
    • 84961650910 scopus 로고
    • In: Comptes Rendue des 3me Congrès International de Zoologie. 3me Congres International de Zoologie, Leyden
    • Janet A (1895) Considérations méchaniques sur l’évolution et le problème des espèces. In: Comptes Rendue des 3me Congrès International de Zoologie. 3me Congres International de Zoologie, Leyden, pp 136–145
    • (1895) Considérations méchaniques Sur l’évolution Et Le problème Des espèces , pp. 136-145
    • Janet, A.1
  • 51
    • 0017284403 scopus 로고
    • On the theory of selection of coupled macromolecular systems
    • Jones BL, Enns RH, Rangnekar SS (1976) On the theory of selection of coupled macromolecular systems. Bull Math Biol 38:15–28
    • (1976) Bull Math Biol , vol.38 , pp. 15-28
    • Jones, B.L.1    Enns, R.H.2    Rangnekar, S.S.3
  • 52
    • 50949096831 scopus 로고    scopus 로고
    • Survival probability of quasi-species model under environmental changes
    • Kang Y-G, Park J-M (2008) Survival probability of quasi-species model under environmental changes. J Korean Phys Soc 53:868–872
    • (2008) J Korean Phys Soc , vol.53 , pp. 868-872
    • Kang, Y.-G.1    Park, J.-M.2
  • 53
    • 0023647382 scopus 로고
    • Towards a general theory of adaptive walks on rugged landscapes
    • Kauffman S, Levin S (1987) Towards a general theory of adaptive walks on rugged landscapes. J Theor Biol 128:11–45
    • (1987) J Theor Biol , vol.128 , pp. 11-45
    • Kauffman, S.1    Levin, S.2
  • 55
    • 0024803111 scopus 로고
    • The N-k model of ruggedfitness landscapes and its application to the maturation of the immune response
    • Kauffman SA, Weinberger ED (1989) The N-k model of rugged fitness landscapes and its application to the maturation of the immune response. J Theor Biol 141:211–245
    • (1989) J Theor Biol , vol.141 , pp. 211-245
    • Kauffman, S.A.1    Weinberger, E.D.2
  • 57
    • 0001503634 scopus 로고
    • A simple model for the balance between selection and mutation
    • Kingman JFC (1978) A simple model for the balance between selection and mutation. J Appl Probab 15:1–12
    • (1978) J Appl Probab , vol.15 , pp. 1-12
    • Kingman, J.1
  • 61
    • 77955657333 scopus 로고    scopus 로고
    • Watching the clock: Studying variation in rates of molecular evolution between species
    • Lanfear R, Welch JJ, Bromham L (2010) Watching the clock: studying variation in rates of molecular evolution between species. TREE 25:495–503
    • (2010) TREE , vol.25 , pp. 495-503
    • Lanfear, R.1    Welch, J.J.2    Bromham, L.3
  • 62
    • 4944255790 scopus 로고
    • An exact correspondence between Eigen’s evolution model and a two-dimensional ising system
    • Leuthäusser I (1986) An exact correspondence between Eigen’s evolution model and a two-dimensional ising system. J Chem Phys 84:1884–1885
    • (1986) J Chem Phys , vol.84 , pp. 1884-1885
    • Leuthäusser, I.1
  • 63
    • 5544283055 scopus 로고
    • Statistical mechanics of Eigen’s evolution model
    • Leuthäusser I (1987) Statistical mechanics of Eigen’s evolution model. J Stat Phys 48:343–360
    • (1987) J Stat Phys , vol.48 , pp. 343-360
    • Leuthäusser, I.1
  • 64
    • 0000333671 scopus 로고
    • On the theory of helix-coil transitions in polypeptides
    • Lifson S (1961) On the theory of helix-coil transitions in polypeptides. J Chem Phys 34:1963–1974
    • (1961) J Chem Phys , vol.34 , pp. 1963-1974
    • Lifson, S.1
  • 66
    • 84961672987 scopus 로고
    • The origin of the “adaptive landscape”concept
    • McCoy JW (1979) The origin of the “adaptive landscape” concept. Am Nat 113:610–613
    • (1979) Am Nat , vol.113 , pp. 610-613
    • McCoy, J.W.1
  • 68
    • 0014107493 scopus 로고
    • An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule
    • Mills DR, Peterson RL, Spiegelman S (1967) An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule. Proc Natl Acad Sci USA 58:217–224
    • (1967) Proc Natl Acad Sci USA , vol.58 , pp. 217-224
    • Mills, D.R.1    Peterson, R.L.2    Spiegelman, S.3
  • 71
    • 79958266389 scopus 로고    scopus 로고
    • Efficient solution of evolution models for virus populations
    • Niederbrucker G, Gansterer WN (2011) Efficient solution of evolution models for virus populations. Procedia Comput Sci 4:126–135
    • (2011) Procedia Comput Sci , vol.4 , pp. 126-135
    • Niederbrucker, G.1    Gansterer, W.N.2
  • 72
    • 0024974481 scopus 로고
    • Error thresholds of replication in finite populations. Mutation frequencies and the onset of Muller’s ratchet
    • Nowak M, Schuster P (1989) Error thresholds of replication in finite populations. Mutation frequencies and the onset of Muller’s ratchet. J Theor Biol 137:375–395
    • (1989) J Theor Biol , vol.137 , pp. 375-395
    • Nowak, M.1    Schuster, P.2
  • 73
    • 75349091080 scopus 로고    scopus 로고
    • Quasispecies theory for finite populations
    • Park J-M, noz EM, Deem MW (2010) Quasispecies theory for finite populations. Phys Rev E 81: e011902
    • (2010) Phys Rev E , vol.81
    • Park, J.-M.1    Noz, E.M.2    Deem, M.W.3
  • 74
    • 77957963240 scopus 로고    scopus 로고
    • Rapid construction of empirical RNA fitness landscapes
    • Pitt JN, Ferré-D’Amaré AR (2010) Rapid construction of empirical RNA fitness landscapes. Science 330:376–379
    • (2010) Science , vol.330 , pp. 376-379
    • Pitt, J.N.1    Ferré-D’amaré, A.R.2
  • 75
    • 84961633947 scopus 로고
    • Generic properties of combinatory maps. Neutral networks of RNA secondary structure
    • University of Chicago Press, Chicago Reidys C, Stadler PF, Schuster P
    • Provine WB (1986) Sewall wright and evolutionary biology. University of Chicago Press, Chicago Reidys C, Stadler PF, Schuster P (1997) Generic properties of combinatory maps. Neutral networks of RNA secondary structure. Bull Math Biol 59:339–397
    • (1986) Sewall Wright and Evolutionary Biology , vol.59 , pp. 339-397
    • Provine, W.B.1
  • 76
    • 0006185167 scopus 로고    scopus 로고
    • Neutrality in fitness landscapes
    • Reidys CM, Stadler PF (2001) Neutrality in fitness landscapes. Appl Math Comput 117:321–350
    • (2001) Appl Math Comput , vol.117 , pp. 321-350
    • Reidys, C.M.1    Stadler, P.F.2
  • 77
    • 0036494672 scopus 로고    scopus 로고
    • Combinatorial landscapes
    • Reidys CM, Stadler PF (2002) Combinatorial landscapes. SIAM Rev 44:3–54
    • (2002) SIAM Rev , vol.44 , pp. 3-54
    • Reidys, C.M.1    Stadler, P.F.2
  • 78
    • 19944416657 scopus 로고    scopus 로고
    • Are pictures really necessary? The case of Sewall Wright’s ‘adaptive lanscapes’
    • In: Baigrie BS, University of Toronto Press, Toronto
    • Ruse M (1996) Are pictures really necessary? The case of Sewall Wright’s ‘adaptive lanscapes’. In: Baigrie BS (ed) Picturing knowledge: historical and philosophical problems concerning the use of art in science. University of Toronto Press, Toronto, pp 303–337
    • (1996) Picturing Knowledge: Historical and Philosophical Problems concerning the Use of Art in Science , pp. 303-337
    • Ruse, M.1
  • 79
    • 33645510409 scopus 로고    scopus 로고
    • Exact solution of the Eigen model with general fitness functions and degradation rates
    • Saakian DB, Hu C-K (2006) Exact solution of the Eigen model with general fitness functions and degradation rates. Proc Natl Acad Sci USA 113:4935–4939
    • (2006) Proc Natl Acad Sci USA , vol.113 , pp. 4935-4939
    • Saakian, D.B.1    Hu, C.-K.2
  • 80
    • 37649032281 scopus 로고    scopus 로고
    • Solvable biological evolution models with general fitness functions and multiple mutations in parallel mutation-selection scheme
    • Saakian DB, Hu C-K, Khachatryan H (2004) Solvable biological evolution models with general fitness functions and multiple mutations in parallel mutation-selection scheme. Phys Rev E 70: e041908
    • (2004) Phys Rev E , vol.70
    • Saakian, D.B.1    Hu, C.-K.2    Khachatryan, H.3
  • 81
    • 2942565781 scopus 로고    scopus 로고
    • The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
    • Sanjuán R, Moya A, Elena SF (2004) The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc Natl Acad Sci USA 101:8396–8401
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 8396-8401
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 83
    • 3242666489 scopus 로고    scopus 로고
    • In: Crutchfield JP, Schuster P (eds) Evolutionary dynamics—exploring the interplay of accident, selection, neutrality, and function. Oxford University Press, New York
    • Schuster P (2003) Molecular insight into the evolution of phenotypes. In: Crutchfield JP, Schuster P (eds) Evolutionary dynamics—exploring the interplay of accident, selection, neutrality, and function. Oxford University Press, New York, pp 163–215
    • (2003) Molecular Insight into the Evolution of Phenotypes , pp. 163-215
    • Schuster, P.1
  • 84
    • 33744995763 scopus 로고    scopus 로고
    • Prediction of RNA secondary structures: From theory to models and real molecules
    • Schuster P (2006) Prediction of RNA secondary structures: from theory to models and real molecules. Rep Prog Phys 69:1419–1477
    • (2006) Rep Prog Phys , vol.69 , pp. 1419-1477
    • Schuster, P.1
  • 85
    • 79952192799 scopus 로고    scopus 로고
    • Mathematical modeling of evolution. Solved and open problems
    • Schuster P (2011) Mathematical modeling of evolution. Solved and open problems. Theory Biosci 130:71–89
    • (2011) Theory Biosci , vol.130 , pp. 71-89
    • Schuster, P.1
  • 87
    • 84961596542 scopus 로고    scopus 로고
    • Present day biology seen in the looking glass of physics of complexity
    • In: Rubio RG, Ryazantsev YS, Starov VM, Huang G, Chetverikov AP, Arena P, Nepomnyashchy AA, Ferrus A, Morozov EG, Springer, Berlin
    • Schuster P (2013) Present day biology seen in the looking glass of physics of complexity. In: Rubio RG, Ryazantsev YS, Starov VM, Huang G, Chetverikov AP, Arena P, Nepomnyashchy AA, Ferrus A, Morozov EG (eds) Without bounds: a scientific canvas of nonlinearity and complex dynamics. Springer, Berlin, pp 589–622
    • (2013) Without Bounds: A Scientific Canvas of Nonlinearity and Complex Dynamics , pp. 589-622
    • Schuster, P.1
  • 88
    • 0028196714 scopus 로고
    • From sequences to shapes and back: A case study in RNA secondary structures
    • Schuster P, Fontana W, Stadler PF, Hofacker IL (1994) From sequences to shapes and back: a case study in RNA secondary structures. Proc Roy Soc Lond B 255:279–284
    • (1994) Proc Roy Soc Lond B , vol.255 , pp. 279-284
    • Schuster, P.1    Fontana, W.2    Stadler, P.F.3    Hofacker, I.L.4
  • 90
    • 0023811909 scopus 로고
    • Stationary mutant distribution and evolutionary optimization
    • Schuster P, Swetina J (1988) Stationary mutant distribution and evolutionary optimization. Bull Math Biol 50:635–660
    • (1988) Bull Math Biol , vol.50 , pp. 635-660
    • Schuster, P.1    Swetina, J.2
  • 91
    • 0014296443 scopus 로고
    • General theoretical approach to the thermodynamic and kinetic properties of cooperative intramolecular transformations of linear biopolymers
    • Schwarz G (1968) General theoretical approach to the thermodynamic and kinetic properties of cooperative intramolecular transformations of linear biopolymers. Biopolymers 6:873–897
    • (1968) Biopolymers , vol.6 , pp. 873-897
    • Schwarz, G.1
  • 94
    • 19944389901 scopus 로고    scopus 로고
    • The heuristic role of Sewall Wright’s 1932 adaptive landscape diagram
    • Skipper RA Jr (2004) The heuristic role of Sewall Wright’s 1932 adaptive landscape diagram. Philos Sci 71:1176–1188
    • (2004) Philos Sci , vol.71 , pp. 1176-1188
    • Skipper, R.A.1
  • 95
    • 84974325243 scopus 로고
    • An approach to the experimental analysis of precellular evolution
    • Spiegelman S (1971) An approach to the experimental analysis of precellular evolution. Quart Rev Biophys 4:213–253
    • (1971) Quart Rev Biophys , vol.4 , pp. 213-253
    • Spiegelman, S.1
  • 97
    • 0020437078 scopus 로고
    • Self-replication with errors—a model for polynucleotide replication
    • Swetina J, Schuster P (1982) Self-replication with errors—a model for polynucleotide replication. Biophys Chem 16:329–345
    • (1982) Biophys Chem , vol.16 , pp. 329-345
    • Swetina, J.1    Schuster, P.2
  • 98
    • 0000829918 scopus 로고
    • Error thresholds for molecular quasispecies as phase transitions: From simple landscapes to spin glasses
    • Tarazona P (1992) Error thresholds for molecular quasispecies as phase transitions: from simple landscapes to spin glasses. Phys Rev A 45:6038–6050
    • (1992) Phys Rev A , vol.45 , pp. 6038-6050
    • Tarazona, P.1
  • 99
    • 77649341255 scopus 로고    scopus 로고
    • Effect of lethality on the extinction and on the error threshold of quasispecies
    • Tejero H, Marín A, Moran F (2010) Effect of lethality on the extinction and on the error threshold of quasispecies. J Theor Biol 262:733–741
    • (2010) J Theor Biol , vol.262 , pp. 733-741
    • Tejero, H.1    Marín, A.2    Moran, F.3
  • 100
    • 0016292754 scopus 로고
    • On Eigen’s theory of the self-organization of matter and the evolution of biological macromolecules
    • Thompson CJ, McBride JL (1974) On Eigen’s theory of the self-organization of matter and the evolution of biological macromolecules. Math Biosci 21:127–142
    • (1974) Math Biosci , vol.21 , pp. 127-142
    • Thompson, C.J.1    McBride, J.L.2
  • 101
    • 0001726160 scopus 로고
    • Theory of frustration effect in spin-glasses. I
    • Toulouse G (1977) Theory of frustration effect in spin-glasses. I. Commun Phys 2:115–119
    • (1977) Commun Phys , vol.2 , pp. 115-119
    • Toulouse, G.1
  • 102
    • 0004042599 scopus 로고
    • The frustration model
    • In: Pękalski A, Przystawa JA, Lecture Notes in PhysicsBerlin, Springer
    • Toulouse G (1980) The frustration model. In: Pękalski A, Przystawa JA (eds) Modern trends in the theory of condensed matter, vol 115., Lecture Notes in PhysicsBerlin, Springer, pp 195–203
    • (1980) Modern Trends in the Theory of Condensed Matter , vol.115 , pp. 195-203
    • Toulouse, G.1
  • 104
    • 76249110585 scopus 로고    scopus 로고
    • Abundant variation + strong selection = multivariate genetic constraints: A geometric view of adaptation
    • Walsh B, Blows MV (2009) Abundant variation + strong selection = multivariate genetic constraints: a geometric view of adaptation. Annu Rev Ecol Evol Syst 40:41–59
    • (2009) Annu Rev Ecol Evol Syst , vol.40 , pp. 41-59
    • Walsh, B.1    Blows, M.V.2
  • 105
    • 0038497542 scopus 로고
    • A structure for deoxyribose nucleic acid
    • Watson JD, Crick FHC (1953) A structure for deoxyribose nucleic acid. Nature 171:737–738
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.2
  • 106
    • 79955377821 scopus 로고    scopus 로고
    • High-throughput identification of genetic interactions in HIV-1
    • Weinreich DM (2011) High-throughput identification of genetic interactions in HIV-1. Nat Genet 41:398–400
    • (2011) Nat Genet , vol.41 , pp. 398-400
    • Weinreich, D.M.1
  • 107
    • 0030789022 scopus 로고    scopus 로고
    • Model dependency of error thresholds: The role of fitness functions and contrasts between the finite and infinite sites models
    • Wiehe T (1997) Model dependency of error thresholds: the role of fitness functions and contrasts between the finite and infinite sites models. Genet Res Camb 69:127–136
    • (1997) Genet Res Camb , vol.69 , pp. 127-136
    • Wiehe, T.1
  • 108
    • 0035913336 scopus 로고    scopus 로고
    • Evolution of digital organisms at high mutation rates leads to survival of the flattest
    • Wilke CO, Wang JL, Ofria C (2001) Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature 412:331–333
    • (2001) Nature , vol.412 , pp. 331-333
    • Wilke, C.O.1    Wang, J.L.2    Ofria, C.3
  • 109
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright S (1931) Evolution in Mendelian populations. Genetics 16:97–159
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 110
    • 0000907353 scopus 로고
    • The roles of mutation, inbreeding, crossbreeding and selection in evolution
    • In: Jones DF, Brooklyn Botanic Garden, Ithaca, NY
    • Wright S (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution. In: Jones DF (ed) International proceedings of the sixth international congress on genetics, vol 1. Brooklyn Botanic Garden, Ithaca, NY, pp 356–366
    • (1932) International Proceedings of the Sixth International Congress on Genetics , vol.1 , pp. 356-366
    • Wright, S.1
  • 111
    • 0001416961 scopus 로고
    • Surfaces of selective value revisited
    • Wright S (1988) Surfaces of selective value revisited. American Naturalist 131:115–123
    • (1988) American Naturalist , vol.131 , pp. 115-123
    • Wright, S.1
  • 112
    • 0000754002 scopus 로고
    • Theory of “melting” of the helical form in double chains of the DNA type
    • Zimm BH (1960) Theory of “melting” of the helical form in double chains of the DNA type. J Chem Phys 33:1349–1356
    • (1960) J Chem Phys , vol.33 , pp. 1349-1356
    • Zimm, B.H.1
  • 113
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker M (1989) On finding all suboptimal foldings of an RNA molecule. Science 244:48–52
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1


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