-
1
-
-
61349127171
-
Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes
-
Abdel-Ghany, S.E. (2009). Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes. Planta 229: 767-779.
-
(2009)
Planta
, vol.229
, pp. 767-779
-
-
Abdel-Ghany, S.E.1
-
2
-
-
47049120791
-
MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis
-
Abdel-Ghany, S.E., and Pilon, M. (2008). MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis. J. Biol. Chem. 283: 15932-15945.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 15932-15945
-
-
Abdel-Ghany, S.E.1
Pilon, M.2
-
3
-
-
17644403212
-
Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts
-
Abdel-Ghany, S.E., Muller-Moule, P., Niyogi, K.K., Pilon, M., and Shikanai, T. (2005). Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. Plant Cell 17: 1233-1251.
-
(2005)
Plant Cell
, vol.17
, pp. 1233-1251
-
-
Abdel-Ghany, S.E.1
Muller-Moule, P.2
Niyogi, K.K.3
Pilon, M.4
Shikanai, T.5
-
4
-
-
77952000918
-
Deregulated copper transport affects Arabidopsis development especially in the absence of environmental cycles
-
Andres-Colas, N., Perea-Garcia, A., Puig, S., and Penarrubia, L. (2010). Deregulated copper transport affects Arabidopsis development especially in the absence of environmental cycles. Plant Physiol. 153: 170-184.
-
(2010)
Plant Physiol
, vol.153
, pp. 170-184
-
-
Andres-Colas, N.1
Perea-Garcia, A.2
Puig, S.3
Penarrubia, L.4
-
5
-
-
0031608912
-
Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Mol
-
Ang, L.H., Chattopadhyay, S., Wei, N., Oyama, T., Okada, K., Batschauer, A., and Deng, X.W. (1998). Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Mol. Cell 1: 213-222.
-
(1998)
Cell
, vol.1
, pp. 213-222
-
-
Ang, L.H.1
Chattopadhyay, S.2
Wei, N.3
Oyama, T.4
Okada, K.5
Batschauer, A.6
Deng, X.W.7
-
6
-
-
43449118038
-
Evolution of plant microRNAs and their targets
-
Axtell, M.J., and Bowman, J.L. (2008). Evolution of plant microRNAs and their targets. Trends Plant Sci. 13: 343-349.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 343-349
-
-
Axtell, M.J.1
Bowman, J.L.2
-
7
-
-
57749121616
-
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol
-
Badis, G., et al. (2008). A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol. Cell 32: 878-887.
-
(2008)
Cell
, vol.32
, pp. 878-887
-
-
Badis, G.1
-
8
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
Bailey, T.L., Williams, N., Misleh, C., and Li, W.W. (2006). MEME: Discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34: W369-W373.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W369-W373
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
9
-
-
77950952075
-
MicroRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis
-
Beauclair, L., Yu, A., and Bouche, N. (2010). MicroRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis. Plant J. 62: 454-462.
-
(2010)
Plant J
, vol.62
, pp. 454-462
-
-
Beauclair, L.1
Yu, A.2
Bouche, N.3
-
10
-
-
84859039846
-
Transcriptome sequencing identifies SPL7- regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis
-
Bernal, M., Casero, D., Singh, V., Wilson, G.T., Grande, A., Yang, H., Dodani, S.C., Pellegrini, M., Huijser, P., Connolly, E.L., Merchant, S.S., and Kramer, U. (2012). Transcriptome sequencing identifies SPL7- regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis. Plant Cell 24: 738-761.
-
(2012)
Plant Cell
, vol.24
, pp. 738-761
-
-
Bernal, M.1
Casero, D.2
Singh, V.3
Wilson, G.T.4
Grande, A.5
Yang, H.6
Dodani, S.C.7
Pellegrini, M.8
Huijser, P.9
Connolly, E.L.10
Merchant, S.S.11
Kramer, U.12
-
11
-
-
24044480976
-
Functional dissection of the plant-specific SBP-domain: Overlap of the DNA- binding and nuclear localization domains
-
Birkenbihl, R.P., Jach, G., Saedler, H., and Huijser, P. (2005). Functional dissection of the plant-specific SBP-domain: Overlap of the DNA- binding and nuclear localization domains. J. Mol. Biol. 352: 585-596.
-
(2005)
J. Mol. Biol
, vol.352
, pp. 585-596
-
-
Birkenbihl, R.P.1
Jach, G.2
Saedler, H.3
Huijser, P.4
-
12
-
-
4544252919
-
Chromatin techniques for plant cells
-
Bowler, C., Benvenuto, G., Laflamme, P., Molino, D., Probst, A.V., Tariq, M., and Paszkowski, J. (2004). Chromatin techniques for plant cells. Plant J. 39: 776-789.
-
(2004)
Plant J
, vol.39
, pp. 776-789
-
-
Bowler, C.1
Benvenuto, G.2
Laflamme, P.3
Molino, D.4
Probst, A.V.5
Tariq, M.6
Paszkowski, J.7
-
13
-
-
65549144746
-
Copper homeostasis
-
Burkhead, J.L., Reynolds, K.A., Abdel-Ghany, S.E., Cohu, C.M., and Pilon, M. (2009). Copper homeostasis. New Phytol. 182: 799-816.
-
(2009)
New Phytol
, vol.182
, pp. 799-816
-
-
Burkhead, J.L.1
Reynolds, K.A.2
Abdel-Ghany, S.E.3
Cohu, C.M.4
Pilon, M.5
-
14
-
-
0032498230
-
The enhanceosome and transcriptional synergy
-
Carey, M. (1998). The enhanceosome and transcriptional synergy. Cell 92: 5-8.
-
(1998)
Cell
, vol.92
, pp. 5-8
-
-
Carey, M.1
-
15
-
-
0032076828
-
Arabidopsis bZIP protein HY5 directly interacts with light- responsive promoters in mediating light control of gene expression
-
Chattopadhyay, S., Ang, L.H., Puente, P., Deng, X.W., and Wei, N. (1998). Arabidopsis bZIP protein HY5 directly interacts with light- responsive promoters in mediating light control of gene expression. Plant Cell 10: 673-683.
-
(1998)
Plant Cell
, vol.10
, pp. 673-683
-
-
Chattopadhyay, S.1
Ang, L.H.2
Puente, P.3
Deng, X.W.4
Wei, N.5
-
16
-
-
10944267031
-
Light signal transduction in higher plants. Annu
-
Chen, M., Chory, J., and Fankhauser, C. (2004). Light signal transduction in higher plants. Annu. Rev. Genet. 38: 87-117.
-
(2004)
Rev. Genet
, vol.38
, pp. 87-117
-
-
Chen, M.1
Chory, J.2
Fankhauser, C.3
-
17
-
-
0024965016
-
Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light
-
Chory, J., Peto, C., Feinbaum, R., Pratt, L., and Ausubel, F. (1989). Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell 58: 991 -999.
-
(1989)
Cell
, vol.58
, pp. 991-999
-
-
Chory, J.1
Peto, C.2
Feinbaum, R.3
Pratt, L.4
Ausubel, F.5
-
18
-
-
1942539165
-
The Arabi- dopsis transcription factor HY5 integrates light and hormone signaling pathways
-
Cluis, C.P., Mouchel, C.F., and Hardtke, C.S. (2004). The Arabi- dopsis transcription factor HY5 integrates light and hormone signaling pathways. Plant J. 38: 332-347.
-
(2004)
Plant J
, vol.38
, pp. 332-347
-
-
Cluis, C.P.1
Mouchel, C.F.2
Hardtke, C.S.3
-
19
-
-
33947232131
-
Regulation of superoxide dismutase expression by copper availability. Physiol
-
Cohu, C.M., and Pilon, M. (2007). Regulation of superoxide dismutase expression by copper availability. Physiol. Plant. 129: 747-755.
-
(2007)
Plant
, vol.129
, pp. 747-755
-
-
Cohu, C.M.1
Pilon, M.2
-
20
-
-
79956198794
-
Photosynthesis-dependent anthocyanin pigmentation in Arabidopsis. Plant Signal
-
Das, P.K., Geul, B., Choi, S.B., Yoo, S.D., and Park, Y.I. (2011). Photosynthesis-dependent anthocyanin pigmentation in Arabidopsis. Plant Signal. Behav. 6: 23-25.
-
(2011)
Behav
, vol.6
, pp. 23-25
-
-
Das, P.K.1
Geul, B.2
Choi, S.B.3
Yoo, S.D.4
Park, Y.I.5
-
21
-
-
0347492019
-
AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabi- dopsis cis-regulatory elements and transcription factors
-
Davuluri, R.V., Sun, H., Palaniswamy, S.K., Matthews, N., Molina, C., Kurtz, M., and Grotewold, E. (2003). AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabi- dopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4: 25.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 25
-
-
Davuluri, R.V.1
Sun, H.2
Palaniswamy, S.K.3
Matthews, N.4
Molina, C.5
Kurtz, M.6
Grotewold, E.7
-
22
-
-
0034778094
-
Why leaves turn red in autumn: The role of anthocyanins in senescing leaves of red-osier dogwood
-
Feild, T.S., Lee, D.W., and Holbrook, N.M. (2001). Why leaves turn red in autumn: The role of anthocyanins in senescing leaves of red-osier dogwood. Plant Physiol. 127: 566-574.
-
(2001)
Plant Physiol
, vol.127
, pp. 566-574
-
-
Feild, T.S.1
Lee, D.W.2
Holbrook, N.M.3
-
23
-
-
3142732890
-
Arabidopsis CAND1, an unmodified CUL1- interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein degradation
-
Feng, S., Shen, Y., Sullivan, J.A., Rubio, V., Xiong, Y., Sun, T.P., and Deng, X.W. (2004). Arabidopsis CAND1, an unmodified CUL1- interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein degradation. Plant Cell 16: 1870-1882.
-
(2004)
Plant Cell
, vol.16
, pp. 1870-1882
-
-
Feng, S.1
Shen, Y.2
Sullivan, J.A.3
Rubio, V.4
Xiong, Y.5
Sun, T.P.6
Deng, X.W.7
-
24
-
-
11944260991
-
Control of plant development and gene expression by sugar signaling
-
Gibson, S.I. (2005). Control of plant development and gene expression by sugar signaling. Curr. Opin. Plant Biol. 8: 93-102.
-
(2005)
Curr. Opin. Plant Biol
, vol.8
, pp. 93-102
-
-
Gibson, S.I.1
-
25
-
-
0033592931
-
A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription
-
Hobo, T., Kowyama, Y., and Hattori, T. (1999). A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proc. Natl. Acad. Sci. USA 96: 15348-15353.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 15348-15353
-
-
Hobo, T.1
Kowyama, Y.2
Hattori, T.3
-
26
-
-
33645880454
-
Functional role of anthocyanins in high-light winter leaves of the evergreen herb Galax urceolata
-
Hughes, N.M., Neufeld, H.S., and Burkey, K.O. (2005). Functional role of anthocyanins in high-light winter leaves of the evergreen herb Galax urceolata. New Phytol. 168: 575-587.
-
(2005)
New Phytol
, vol.168
, pp. 575-587
-
-
Hughes, N.M.1
Neufeld, H.S.2
Burkey, K.O.3
-
27
-
-
33847042609
-
Light-regulated transcriptional networks in higher plants. Nat
-
Jiao, Y., Lau, O.S., and Deng, X.W. (2007). Light-regulated transcriptional networks in higher plants. Nat. Rev. Genet. 8: 217-230.
-
(2007)
Rev. Genet
, vol.8
, pp. 217-230
-
-
Jiao, Y.1
Lau, O.S.2
Deng, X.W.3
-
28
-
-
33745604530
-
Cyclic electron flow in C3 plants. Biochim. Biophys
-
Joliot, P., and Joliot, A. (2006). Cyclic electron flow in C3 plants. Biochim. Biophys. Acta 1757: 362-368.
-
(2006)
Acta
, vol.1757
, pp. 362-368
-
-
Joliot, P.1
Joliot, A.2
-
29
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress- induced miRNA. Mol
-
Jones-Rhoades, M.W., and Bartel, D.P. (2004). Computational identification of plant microRNAs and their targets, including a stress- induced miRNA. Mol. Cell 14: 787-799.
-
(2004)
Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
30
-
-
78650971925
-
Does enhanced photosynthesis enhance growth? Lessons learned from CO2 enrichment studies
-
Kirschbaum, M.U. (2011). Does enhanced photosynthesis enhance growth? Lessons learned from CO2 enrichment studies. Plant Physiol. 155: 117-124.
-
(2011)
Plant Physiol
, vol.155
, pp. 117-124
-
-
Kirschbaum, M.U.1
-
31
-
-
29444433851
-
A regulator of nutritional copper signaling inChlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element
-
Kropat, J., Tottey, S., Birkenbihl, R.P., Depege, N., Huijser, P., and Merchant, S. (2005). A regulator of nutritional copper signaling inChlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. Proc. Natl. Acad. Sci. USA 102: 18730-18735.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18730-18735
-
-
Kropat, J.1
Tottey, S.2
Birkenbihl, R.P.3
Depege, N.4
Huijser, P.5
Merchant, S.6
-
32
-
-
44449108165
-
Isolation and preparation of chloroplasts from Arabidopsis thaliana plants. Methods Mol
-
Kubis, S.E., Lilley, K.S., and Jarvis, P. (2008). Isolation and preparation of chloroplasts from Arabidopsis thaliana plants. Methods Mol. Biol. 425: 171-186.
-
(2008)
Biol
, vol.425
, pp. 171-186
-
-
Kubis, S.E.1
Lilley, K.S.2
Jarvis, P.3
-
33
-
-
0033534648
-
Characterization of two subunits of Arabidopsis 19S proteasome regulatory complex and its possible interaction with the COP9 complex
-
Kwok, S.F., Staub, J.M., and Deng, X.W. (1999). Characterization of two subunits of Arabidopsis 19S proteasome regulatory complex and its possible interaction with the COP9 complex. J. Mol. Biol. 285: 85-95.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 85-95
-
-
Kwok, S.F.1
Staub, J.M.2
Deng, X.W.3
-
34
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10: R25.
-
(2009)
Genome Biol
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
35
-
-
0037742612
-
Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2
-
Lara, P., Onate-Sanchez, L., Abraham, Z., Ferrandiz, C., Diaz, I., Carbonero, P., and Vicente-Carbajosa, J. (2003). Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2. J. Biol. Chem. 278: 21003-21011.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 21003-21011
-
-
Lara, P.1
Onate-Sanchez, L.2
Abraham, Z.3
Ferrandiz, C.4
Diaz, I.5
Carbonero, P.6
Vicente-Carbajosa, J.7
-
36
-
-
34250780751
-
Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development
-
Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., Tongprasit, W., Zhao, H., Lee, I., and Deng, X.W. (2007). Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell 19: 731-749.
-
(2007)
Plant Cell
, vol.19
, pp. 731-749
-
-
Lee, J.1
He, K.2
Stolc, V.3
Lee, H.4
Figueroa, P.5
Gao, Y.6
Tongprasit, W.7
Zhao, H.8
Lee, I.9
Deng, X.W.10
-
37
-
-
77953219475
-
BZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis
-
Liu, J.X., and Howell, S.H. (2010).BZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. Plant Cell 22: 782-796.
-
(2010)
Plant Cell
, vol.22
, pp. 782-796
-
-
Liu, J.X.1
Howell, S.H.2
-
38
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks
-
Maere, S., Heymans, K., and Kuiper, M. (2005). BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Bioinformatics 21: 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
40
-
-
0034063592
-
Chlorophyll fluorescence—A practical guide
-
Maxwell, K., and Johnson, G.N. (2000). Chlorophyll fluorescence—A practical guide. J. Exp. Bot. 51: 659-668.
-
(2000)
J. Exp. Bot
, vol.51
, pp. 659-668
-
-
Maxwell, K.1
Johnson, G.N.2
-
41
-
-
55249092928
-
Light absorption by anthocyanins in juvenile, stressed, and senescing leaves
-
Merzlyak, M.N., Chivkunova, O.B., Solovchenko, A.E., and Naqvi, K.R. (2008). Light absorption by anthocyanins in juvenile, stressed, and senescing leaves. J. Exp. Bot. 59: 3903-3911.
-
(2008)
J. Exp. Bot
, vol.59
, pp. 3903-3911
-
-
Merzlyak, M.N.1
Chivkunova, O.B.2
Solovchenko, A.E.3
Naqvi, K.R.4
-
42
-
-
0001428207
-
Signal perception, transduction, and gene expression involved in anthocyanin biosynthesis. Crit
-
Mol, J, Jenkins, G., Schafer, E., and Weiss, D. (1996). Signal perception, transduction, and gene expression involved in anthocyanin biosynthesis. Crit. Rev. Plant Sci. 15: 525-557.
-
(1996)
Rev. Plant Sci
, vol.15
, pp. 525-557
-
-
Mol, J.1
Jenkins, G.2
Schafer, E.3
Weiss, D.4
-
43
-
-
80755155808
-
Multiple transcription factor families regulate axon growth and regeneration. Dev
-
Moore, D.L., and Goldberg, J.L. (2011). Multiple transcription factor families regulate axon growth and regeneration. Dev. Neurobiol. 71: 1186-1211.
-
(2011)
Neurobiol
, vol.71
, pp. 1186-1211
-
-
Moore, D.L.1
Goldberg, J.L.2
-
44
-
-
0036010573
-
Reciprocal expression of two candidate di-iron enzymes affecting photosystem I and light-harvesting complex accumulation
-
Moseley, J.L., Page, M.D., Alder, N.P., Eriksson, M., Quinn, J., Soto, F., Theg, S.M., Hippler, M., and Merchant, S. (2002). Reciprocal expression of two candidate di-iron enzymes affecting photosystem I and light-harvesting complex accumulation. Plant Cell 14: 673-688.
-
(2002)
Plant Cell
, vol.14
, pp. 673-688
-
-
Moseley, J.L.1
Page, M.D.2
Alder, N.P.3
Eriksson, M.4
Quinn, J.5
Soto, F.6
Theg, S.M.7
Hippler, M.8
Merchant, S.9
-
45
-
-
48549090692
-
Identification of negative cis-acting elements in response to copper in the chloro- plastic iron superoxide dismutase gene of the moss Barbula un- guiculata
-
Nagae, M., Nakata, M., and Takahashi, Y. (2008). Identification of negative cis-acting elements in response to copper in the chloro- plastic iron superoxide dismutase gene of the moss Barbula un- guiculata. Plant Physiol. 146: 1687-1696.
-
(2008)
Plant Physiol
, vol.146
, pp. 1687-1696
-
-
Nagae, M.1
Nakata, M.2
Takahashi, Y.3
-
46
-
-
0141501433
-
Anthocyanins in leaves: Light attenuators or antioxidants? Funct
-
Neill, S.O., and Gould, K.S. (2003). Anthocyanins in leaves: Light attenuators or antioxidants? Funct. Plant Biol. 30: 865-873.
-
(2003)
Plant Biol
, vol.30
, pp. 865-873
-
-
Neill, S.O.1
Gould, K.S.2
-
47
-
-
0034713297
-
Targeted destabilization of HY5 during light-regulated development of Arabidopsis
-
Osterlund, M.T., Hardtke, C.S., Wei, N., and Deng, X.W. (2000). Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature 405: 462-466.
-
(2000)
Nature
, vol.405
, pp. 462-466
-
-
Osterlund, M.T.1
Hardtke, C.S.2
Wei, N.3
Deng, X.W.4
-
48
-
-
0030718602
-
The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl
-
Oyama, T., Shimura, Y., and Okada, K. (1997). The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11: 2983-2995.
-
(1997)
Genes Dev
, vol.11
, pp. 2983-2995
-
-
Oyama, T.1
Shimura, Y.2
Okada, K.3
-
49
-
-
79957736101
-
ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds
-
Park, J., Lee, N., Kim, W., Lim, S., and Choi, G. (2011). ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds. Plant Cell 23: 1404-1415.
-
(2011)
Plant Cell
, vol.23
, pp. 1404-1415
-
-
Park, J.1
Lee, N.2
Kim, W.3
Lim, S.4
Choi, G.5
-
50
-
-
65249171514
-
Mutants, overexpressors, and interactors of Arabidopsis plastocyanin isoforms: Revised roles of plastocyanin in photosynthetic electron flow and thylakoid redox state. Mol
-
Pesaresi, P., Scharfenberg, M., Weigel, M., Granlund, I., Schroder, W.P., Finazzi, G., Rappaport, F., Masiero, S., Furini, A., Jahns, P., and Leister, D. (2009). Mutants, overexpressors, and interactors of Arabidopsis plastocyanin isoforms: Revised roles of plastocyanin in photosynthetic electron flow and thylakoid redox state. Mol. Plant 2: 236-248.
-
(2009)
Plant
, vol.2
, pp. 236-248
-
-
Pesaresi, P.1
Scharfenberg, M.2
Weigel, M.3
Granlund, I.4
Schroder, W.P.5
Finazzi, G.6
Rappaport, F.7
Masiero, S.8
Furini, A.9
Jahns, P.10
Leister, D.11
-
51
-
-
33646133199
-
Copper cofactor delivery in plant cells
-
Pilon, M., Abdel-Ghany, S.E., Cohu, C.M., Gogolin, K.A., and Ye, H. (2006). Copper cofactor delivery in plant cells. Curr. Opin. Plant Biol. 9: 256-263.
-
(2006)
Curr. Opin. Plant Biol
, vol.9
, pp. 256-263
-
-
Pilon, M.1
Abdel-Ghany, S.E.2
Cohu, C.M.3
Gogolin, K.A.4
Ye, H.5
-
52
-
-
0029294085
-
Two copper-responsive elements associated with the Chlamydomonas Cyc6 gene function as targets for transcriptional activators
-
Quinn, J.M., and Merchant, S. (1995). Two copper-responsive elements associated with the Chlamydomonas Cyc6 gene function as targets for transcriptional activators. Plant Cell 7: 623-628.
-
(1995)
Plant Cell
, vol.7
, pp. 623-628
-
-
Quinn, J.M.1
Merchant, S.2
-
53
-
-
0033553513
-
Induction of coproporphyrinogen oxidase in Chlamydomonas chloroplasts occurs via transcriptional regulation of Cpx1 mediated by copper response elements and increased translation from a copper deficiency-specific form of the transcript
-
Quinn, J.M., Nakamoto, S.S., and Merchant, S. (1999). Induction of coproporphyrinogen oxidase in Chlamydomonas chloroplasts occurs via transcriptional regulation of Cpx1 mediated by copper response elements and increased translation from a copper deficiency-specific form of the transcript. J. Biol. Chem. 274: 14444-14454.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 14444-14454
-
-
Quinn, J.M.1
Nakamoto, S.S.2
Merchant, S.3
-
54
-
-
0015930823
-
Higher plant plastocyanin. Biochim. Biophys
-
Ramshaw, J.A., Brown, R.H., Scawen, M.D., and Boulter, D. (1973). Higher plant plastocyanin. Biochim. Biophys. Acta 303: 269-273.
-
(1973)
Acta
, vol.303
, pp. 269-273
-
-
Ramshaw, J.A.1
Brown, R.H.2
Scawen, M.D.3
Boulter, D.4
-
55
-
-
0032076829
-
Proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1
-
Schultz, T.F., Medina, J., Hill, A., and Quatrano, R.S. (1998). 14-3-3 proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1. Plant Cell 10: 837-847.
-
(1998)
Plant Cell
, vol.10
, pp. 837-847
-
-
Schultz, T.F.1
Medina, J.2
Hill, A.3
Quatrano, R.S.4
-
56
-
-
0037781037
-
PAA1, a P-type ATPase of Arabidopsis, functions in copper transport in chloroplasts
-
Shikanai, T., Muller-Moule, P., Munekage, Y., Niyogi, K.K., and Pilon, M. (2003). PAA1, a P-type ATPase of Arabidopsis, functions in copper transport in chloroplasts. Plant Cell 15: 1333-1346.
-
(2003)
Plant Cell
, vol.15
, pp. 1333-1346
-
-
Shikanai, T.1
Muller-Moule, P.2
Munekage, Y.3
Niyogi, K.K.4
Pilon, M.5
-
57
-
-
33847345588
-
PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabi- dopsis
-
Shin, J., Park, E., and Choi, G. (2007). PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabi- dopsis. Plant J. 49: 981 -994.
-
(2007)
Plant J
, vol.49
, pp. 981-994
-
-
Shin, J.1
Park, E.2
Choi, G.3
-
58
-
-
33646838073
-
Sucrose-specific induction of the anthocyanin biosynthetic pathway in Arabidopsis
-
Solfanelli, C., Poggi, A., Loreti, E., Alpi, A., and Perata, P. (2006). Sucrose-specific induction of the anthocyanin biosynthetic pathway in Arabidopsis. Plant Physiol. 140: 637-646.
-
(2006)
Plant Physiol
, vol.140
, pp. 637-646
-
-
Solfanelli, C.1
Poggi, A.2
Loreti, E.3
Alpi, A.4
Perata, P.5
-
59
-
-
79551650614
-
The CRR1 nutritional copper sensor in Chlamydomonas contains two distinct metal- responsive domains
-
Sommer, F., Kropat, J., Malasarn, D., Grossoehme, N.E., Chen, X., Giedroc, D.P., and Merchant, S.S. (2010). The CRR1 nutritional copper sensor in Chlamydomonas contains two distinct metal- responsive domains. Plant Cell 22: 4098-4113.
-
(2010)
Plant Cell
, vol.22
, pp. 4098-4113
-
-
Sommer, F.1
Kropat, J.2
Malasarn, D.3
Grossoehme, N.E.4
Chen, X.5
Giedroc, D.P.6
Merchant, S.S.7
-
60
-
-
48549091586
-
DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins
-
Song, Y.H., et al. (2008). DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins. Plant Physiol. 146: 1862-1877.
-
(2008)
Plant Physiol
, vol.146
, pp. 1862-1877
-
-
Song, Y.H.1
-
61
-
-
33747505089
-
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
-
Sunkar, R., Kapoor, A., and Zhu, J.K. (2006). Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18: 2051-2065.
-
(2006)
Plant Cell
, vol.18
, pp. 2051-2065
-
-
Sunkar, R.1
Kapoor, A.2
Zhu, J.K.3
-
62
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L., and Salzberg, S.L. (2009). TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
63
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat
-
Trapnell, C., Williams, B.A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M.J., Salzberg, S.L., Wold, B.J., and Pachter, L. (2010). Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28: 511-515.
-
(2010)
Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
64
-
-
33846454356
-
HY5 is a point of convergence between cryptochrome and cytokinin signalling pathways in Arabidopsis thaliana
-
Vandenbussche, F., Habricot, Y., Condiff, A.S., Maldiney, R., Van der Straeten, D., and Ahmad, M. (2007). HY5 is a point of convergence between cryptochrome and cytokinin signalling pathways in Arabidopsis thaliana. Plant J. 49: 428-441.
-
(2007)
Plant J
, vol.49
, pp. 428-441
-
-
Vandenbussche, F.1
Habricot, Y.2
Condiff, A.S.3
Maldiney, R.4
Van Der Straeten, D.5
Ahmad, M.6
-
65
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet, O. (2009). Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
66
-
-
0043234252
-
Plastocyanin is indispensable for photosynthetic electron flow in Arabidopsis thaliana
-
Weigel, M., Varotto, C., Pesaresi, P., Finazzi, G., Rappaport, F., Salamini, F. and Leister, D. (2003). Plastocyanin is indispensable for photosynthetic electron flow in Arabidopsis thaliana. J. Biol. Chem. 278: 31286-31289.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 31286-31289
-
-
Weigel, M.1
Varotto, C.2
Pesaresi, P.3
Finazzi, G.4
Rappaport, F.5
Salamini, F.6
Leister, D.7
-
67
-
-
0036741191
-
Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5
-
Yadav, V., Kundu, S., Chattopadhyay, D., Negi, P., Wei, N., Deng, X.W., and Chattopadhyay, S. (2002). Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis. Plant J. 31: 741-753.
-
(2002)
Arabidopsis. Plant J
, vol.31
, pp. 741-753
-
-
Yadav, V.1
Kundu, S.2
Chattopadhyay, D.3
Negi, P.4
Wei, N.5
Deng, X.W.6
Chattopadhyay, S.7
-
68
-
-
34447528701
-
Regulation of copper homeostasis by micro- RNA in Arabidopsis
-
Yamasaki, H., Abdel-Ghany, S.E., Cohu, C.M., Kobayashi, Y., Shikanai, T., and Pilon, M. (2007). Regulation of copper homeostasis by micro- RNA in Arabidopsis. J. Biol. Chem. 282: 16369-16378.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 16369-16378
-
-
Yamasaki, H.1
Abdel-Ghany, S.E.2
Cohu, C.M.3
Kobayashi, Y.4
Shikanai, T.5
Pilon, M.6
-
69
-
-
62549146646
-
SQUAMOSA promoter binding protein-like7 is a central regulator for copper homeostasis in Arabidopsis
-
Yamasaki, H., Hayashi, M., Fukazawa, M., Kobayashi, Y., and Shikanai, T. (2009). SQUAMOSA promoter binding protein-like7 is a central regulator for copper homeostasis in Arabidopsis. Plant Cell 21: 347-361.
-
(2009)
Plant Cell
, vol.21
, pp. 347-361
-
-
Yamasaki, H.1
Hayashi, M.2
Fukazawa, M.3
Kobayashi, Y.4
Shikanai, T.5
-
70
-
-
0034056617
-
Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize
-
Yanagisawa, S. (2000). Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21: 281-288.
-
(2000)
Plant J
, vol.21
, pp. 281-288
-
-
Yanagisawa, S.1
-
71
-
-
84875365879
-
SQUAMOSA promoter binding protein- like7 regulated microRNA408 is required for vegetative development in Arabidopsis
-
Zhang, H., and Li, L. (2013). SQUAMOSA promoter binding protein- like7 regulated microRNA408 is required for vegetative development in Arabidopsis. Plant J. 74: 98-109.
-
(2013)
Plant J
, vol.74
, pp. 98-109
-
-
Zhang, H.1
Li, L.2
-
72
-
-
79251572672
-
Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post- transcriptional regulation
-
Zhang, H., He, H., Wang, X., Wang, X., Yang, X., Li, L., and Deng, X.W. (2011). Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post- transcriptional regulation. Plant J. 65: 346-358.
-
(2011)
Plant J
, vol.65
, pp. 346-358
-
-
Zhang, H.1
He, H.2
Wang, X.3
Wang, X.4
Yang, X.5
Li, L.6
Deng, X.W.7
-
73
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W., and Liu, X.S. (2008). Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9: R137.
-
(2008)
Genome Biol
, vol.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
74
-
-
84873525693
-
Identification and analysis of the proximal promoters of microRNA genes in Arabidopsis
-
Zhao, X., Zhang, H., and Li, L. (2013). Identification and analysis of the proximal promoters of microRNA genes in Arabidopsis. Genomics 101: 187-194.
-
(2013)
Genomics
, vol.101
, pp. 187-194
-
-
Zhao, X.1
Zhang, H.2
Li, L.3
-
75
-
-
77952533806
-
Improving photosynthetic efficiency for greater yield. Annu
-
Zhu, X.G., Long, S.P., and Ort, D.R. (2010). Improving photosynthetic efficiency for greater yield. Annu. Rev. Plant Biol. 61: 235-261.
-
(2010)
Rev. Plant Biol
, vol.61
, pp. 235-261
-
-
Zhu, X.G.1
Long, S.P.2
Ort, D.R.3
|