Identification of negative cis-acting elements in response to copper in the chloroplastic iron superoxide dismutase gene of the moss Barbula unguiculata

Plant Physiology

Volumn 146, Issue 4, 2008, Pages 1687-1696

  Nagae, Miwa ^a   Nakata, Masaru ^a   Takahashi, Yohsuke ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BARBULA UNGUICULATA; BRYOPHYTA; BRYOPHYTES; EMBRYOPHYTA; NICOTIANA TABACUM;

COPPER; PRIMER DNA; SUPEROXIDE DISMUTASE;

ARTICLE; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; MOSS; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

BASE SEQUENCE; BRYOPHYTA; COPPER; DNA PRIMERS; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SUPEROXIDE DISMUTASE;

EID: 48549090692     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.107.114868     Document Type: Article

References (54)

1. Abdel-Ghany SE, Burkhead JL, Gogolin KA, Andrés-Colás N, Bodecker JR, Puig S, Peñarrubia L, Pilon M (2005a) AtCCS is a functional homolog of the yeast copper chaperone Ccs1/Lys7. FEBS Lett 579: 2307-2312
2. Abdel-Ghany SE, Muller-Moulé P, Niyogi KK, Pilon M, Shikanai T (2005b) Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. Plant Cell 17: 1233-1251
3. Alscher RG, Erturk N, Heath LS (2002) Role of superoxide dismutases (SODs) in controlling oxidative stress in plants. J Exp Bot 53: 1331-1341
4. Asada K, Kanematsu S, Uchida K (1977) Superoxide dismutase in photosynthetic organisms: absence of the cuprozinc enzyme in eukaryotic algae. Arch Biochem Biophys 179: 243-256
5. Ashton NW, Cove DJ (1977) The isolation and preliminary characterization of auxotrophic and analogue resistant mutants in the moss Physcomitrella patens. Mol Gen Genet 154: 87-95
6. Balamurugan K, Schaffner W (2006) Copper homeostasis in eukaryotes: teetering on a tightrope. Biochim Biophys Acta 1763: 737-746
7. Birkenbihl RP, Jach G, Saedler H, Huijser P (2005) Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains. J Mol Biol 352: 585-596
8. Bonnet E, Wuyts J, Rouzé P, Van de Peer Y (2004) Evidence that micro RNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20: 2911-2917
9. Dameron CT, Winge DR, George GN, Sansone M, Hu S, Hamer D (1991) A copper-thiolate polynuclear cluster in the ACE1 transcription factor. Proc Natl Acad Sci USA 88: 6127-6131
10. Egami F (1975) Origin and early evolution of transition element enzymes. J Biochem 77: 1165-1169
11. Evans CF, Engelke DR, Thiele DJ (1990) ACE1 transcription factor produced in Escherichia coli binds multiple regions within yeast metallothionein upstream activation sequences. Mol Cell Biol 10: 426-429
12. Fink RC, Scandalios JG (2002) Molecular evolution and structure-function relationship of the superoxide dismutase gene families in angiosperms and their relationship to other eukaryotic and prokaryotic superoxide dismutase. Arch Biochem Biophys 399: 19-36
13. Fukazawa J, Sakai T, Ishida S, Yamaguchi I, Kamiya Y, Takahashi Y (2000) REPRESSION OF SHOOT GROWTH, a bZIP transcriptional activator, regulates cell elongation by controlling the level of gibberellins. Plant Cell 12: 901-915
14. Fürst P, Hu S, Hackett R, Hamer D (1988) Copper activates metallothionein gene transcription by altering the conformation of a specific DNA binding protein. Cell 55: 705-717
15. Gralla EB, Thiele DJ, Silar P, Valentine JS (1991) ACE1, a copper-dependent transcription factor, activates expression of the yeast copper, zinc superoxide dismutase gene. Proc Natl Acad Sci USA 88: 8558-8562
16. 6. J Biol Chem 266: 15060-15067
17. Hill KL, Merchant S (1995) Coordinate expression of coproporphyrinogen oxidase and cytochrome c6 in the green alga Chlamydomonas reinhardtii in response to changes in copper availability. EMBO J 14: 857-865
18. Himelblau E, Mira H, Lin S-J, Culotta VC, Peñarrubia L, Amasino RM (1998) Identification of a functional homolog of the yeast copper homeostasis gene ATX1 from Arabidopsis. Plant Physiol 117: 1227-1234
19. Hiwatashi Y, Nishiyama T, Fujita T, Hasebe M (2001) Establishment of gene-trap and enhancer-trap systems in the moss Physcomitrella patens. Plant J 28: 105-116
20. Huibregtse JM, Engelke DR, Thiele DJ (1989) Copper-induced binding of cellular factors to yeast metallothionein upstream activation sequences. Proc Natl Acad Sci USA 86: 65-69
21. Jefferson RA (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5: 387-405
22. Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant micro RNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799
23. Kanematsu S, Asada K (1989) CuZn-superoxide dismutases from the fern Equisetum arvense and the green alga Spirogyra sp.: occurrence of chloroplast and cytosol types of enzyme. Plant Cell Physiol 30: 717-727
24. Keller G, Bird A, Winge DR (2005) Independent metalloregulation of Ace1 and Mac1 in Saccharomyces cerevisiae. Eukaryot Cell 4: 1863-1871
25. Kenrick P, Crane PR (1997) The origin and early evolution of plants on land. Nature 389: 33-39
26. Kropat J, Tottey S, Birkenbihl RP, Depége N, Huijser P, Merchant S (2005) A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. Proc Natl Acad Sci USA 102: 18730-18735
27. Kurepa J, Van Montagu M, Inzé D (1997) Expression of sodCp and sodB genes in Nicotiana tabacum: effects of light and copper excess. J Exp Bot 48: 2007-2014
28. Labbé S, Zhu Z, Thiele DJ (1997) Copper-specific transcriptional repression of yeast genes encoding critical components in the copper transport pathway. J Biol Chem 272: 15951-15958
29. Lumsden J, Hall DO (1975) Superoxide dismutase in photosynthetic organisms provides an evolutionary hypothesis. Nature 257: 670-672
30. Matsushita A, Furumoto T, Ishida S, Takahashi Y (2007) AGF1, an AT-hook protein, is necessary for the negative feedback of AtGA3ox1 encoding GA 3-oxidase. Plant Physiol 143: 1152-1162
31. 552 in Chlamydomonas reinhardtii. Mol Cell Biol 6: 462-469
32. Mitsuhara I, Ugaki M, Hirochika H, Ohshima M, Murakami T, Gotoh Y, Katayose Y, Nakamura S, Honkura R, Nishimiya S, et al (1996) Efficient promoter cassettes for enhanced expression of foreign genes in dicotyledonous and monocotyledonous plants. Plant Cell Physiol 37: 49-59
33. Mittler R (2002) Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci 7: 405-410
34. Mittler R, Vanderauwera S, Gollery M, Van Breusegem F (2004) Reactive oxygen gene network of plants. Trends Plant Sci 9: 490-498
35. Murao K, Takamiya M, Ono K, Takano H, Takio S (2004) Copper deficiency induced expression of Fe-superoxide dismutase gene in Matteuccia struthiopteris. Plant Physiol Biochem 42: 143-148
36. Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant 15: 437-497
37. Nishiyama T, Hiwatashi Y, Sakakibara K, Kato M, Hasebe M (2000) Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis. DNA Res 7: 9-17
38. Puig S, Andrés-Colás N, García-Molina A, Peñarrubia L (2007) Copper and iron homeostasis in Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications. Plant Cell Environ 30: 271-290
39. Quinn JM, Barraco P, Eriksson M, Merchant S (2000) Coordinate copper- and oxygen-responsive Cyc6 and Cpx1 expression in Chlamydomonas is mediated by the same element. J Biol Chem 275: 6080-6089
40. Quinn JM, Nakamoto SS, Merchant S (1999) Induction of coproporphyrinogen oxidase in Chlamydomonas chloroplasts occurs via transcriptional regulation of Cpx1 mediated by copper response elements and increased translation from a copper deficiency-specific form of the transcript. J Biol Chem 274: 14444-14454
41. Sancenón V, Puig S, Mira H, Thiele DJ, Peñarrubia L (2003) Identification of a copper transporter family in Arabidopsis thaliana. Plant Mol Biol 51: 577-587
42. Shcolnick S, Keren N (2006) Metal homeostasis in cyanobacteria and chloroplasts. Balancing benefits and risks to the photosynthetic apparatus. Plant Physiol 141: 805-810
43. Shiono T, Nakata M, Yamahara T, Matuzaki M, Deguchi H, Satoh T (2003) Repression by Cu of the expression of Fe-superoxide dismutase of the chloroplasts in the moss Barbula unguiculata but not in the liverwort Marchantia paleacea var. diptera. J Hattori Bot Lab 93: 141-153
44. Stallings WC, Powers TB, Pattridge KA, Fee JA, Ludwig ML (1983) Iron superoxide dismutase from Escherichia coli at 3.1-Aringacute; resolution: a structure unlike that of copper/zinc protein at both monomer and dimmer levels. Proc Natl Acad Sci USA 80: 3884-3888
45. Steinman HM, Hill RL (1973) Sequence homologies among bacterial and mitochondrial superoxide dismutases. Proc Natl Acad Sci USA 70: 3725-3729
46. Sunkar R, Kapoor A, Zhu JK (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18: 2066-2081
47. Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16: 2001-2019
48. Tanaka K, Takio S, Satoh T (1995) Inactivation of the cytosolic Cu/Zn-superoxide dismutase induced by copper deficiency in suspension-cultured cells of Marchantia paleacea var. diprera. J Plant Physiol 146: 361-365
49. Thiele DJ (1988) ACE1 regulates expression of the Saccharomyces cerevisiae metallothionein gene. Mol Cell Biol 8: 2745-2752
50. Waters ER (2003) Molecular adaptation and the origin of land plants. Mol Phylogenet Evol 29: 456-463
51. Wellman CH, Osterloff PL, Mohiuddin U (2003) Fragments of the earliest land plants. Nature 425: 282-285
52. Wintz H, Fox T, Wu YY, Feng V, Chen W, Chang HS, Zhu T, Vulpe C (2003) Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis. J Biol Chem 278: 47644-47653
53. Yamahara T, Haraguchi T, Amakawa K, Ono K, Takio S, Tanaka K, Deguchi H, Satoh T (1999) Superoxide dismutase suggests phylogenetic relationships among bryophytes. J Hattori Bot Lab 87: 309-313
54. Yamasaki H, Abdel-Ghany SE, Cohu CM, Kobayashi Y, Shikanai T, Pilon M (2007) Regulation of copper homeostasis by micro-RNA in Arabidopsis. J Biol Chem 282: 16369-16378