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Volumn 213, Issue , 2016, Pages 103-110

Genome scale metabolic reconstruction of Chlorella variabilis for exploring its metabolic potential for biofuels

Author keywords

Algae; Chlorella variabilis; Flux balance analysis; Genome scale reconstruction; Metabolic reconstruction

Indexed keywords

ALGAE; BIOMOLECULES; GENES; METABOLISM; METABOLITES; PHYSIOLOGY;

EID: 84961193569     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2016.02.118     Document Type: Article
Times cited : (38)

References (35)
  • 1
    • 84991913434 scopus 로고    scopus 로고
    • Biofuel from recombinant oleaginous algae using sugar carbon sources, Google Patents
    • Allnutt, F.C.T., Postier, B.L., Sayre, R.T., Coury, D.A., 2012. Biofuel from recombinant oleaginous algae using sugar carbon sources, Google Patents.
    • (2012)
    • Allnutt, F.C.T.1    Postier, B.L.2    Sayre, R.T.3    Coury, D.A.4
  • 2
    • 48649089880 scopus 로고    scopus 로고
    • Marine Nutraceuticals and Functional Foods
    • CRC Press
    • Barrow, C., Shahidi, F., Marine Nutraceuticals and Functional Foods. 2007, CRC Press.
    • (2007)
    • Barrow, C.1    Shahidi, F.2
  • 3
    • 0009787421 scopus 로고
    • A reevaluation of the role of glycerol in carbon translocation in zooxanthellae-coelenterate symbiosis
    • Battey, J., Patton, J., A reevaluation of the role of glycerol in carbon translocation in zooxanthellae-coelenterate symbiosis. Mar. Biol. 79:1 (1984), 27–38.
    • (1984) Mar. Biol. , vol.79 , Issue.1 , pp. 27-38
    • Battey, J.1    Patton, J.2
  • 5
    • 58849135386 scopus 로고    scopus 로고
    • Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii
    • Boyle, N.R., Morgan, J.A., Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii. BMC Syst. Biol., 3(1), 2009, 4.
    • (2009) BMC Syst. Biol. , vol.3 , Issue.1 , pp. 4
    • Boyle, N.R.1    Morgan, J.A.2
  • 7
    • 84876433401 scopus 로고    scopus 로고
    • Virus infection of Chlorella variabilis and enzymatic saccharification of algal biomass for bioethanol production
    • Cheng, Y.-S., Zheng, Y., Labavitch, J.M., VanderGheynst, J.S., Virus infection of Chlorella variabilis and enzymatic saccharification of algal biomass for bioethanol production. Bioresour. Technol. 137 (2013), 326–331.
    • (2013) Bioresour. Technol. , vol.137 , pp. 326-331
    • Cheng, Y.-S.1    Zheng, Y.2    Labavitch, J.M.3    VanderGheynst, J.S.4
  • 8
    • 77953298113 scopus 로고    scopus 로고
    • A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
    • Chou, K.C., Shen, H.B., A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PLoS ONE, 5(4), 2010, e9931.
    • (2010) PLoS ONE , vol.5 , Issue.4 , pp. e9931
    • Chou, K.C.1    Shen, H.B.2
  • 10
    • 0000240432 scopus 로고
    • The dependence of the quantum yield of Chlorella photosynthesis on wave length of light
    • Emerson, R., Lewis, C.M., The dependence of the quantum yield of Chlorella photosynthesis on wave length of light. Am. J. Bot., 1943, 165–178.
    • (1943) Am. J. Bot. , pp. 165-178
    • Emerson, R.1    Lewis, C.M.2
  • 11
    • 33645462347 scopus 로고    scopus 로고
    • Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
    • Feist, A.M., Scholten, J., Palsson, B.Ø., Brockman, F.J., Ideker, T., Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. Mol. Syst. Biol., 2(1), 2006.
    • (2006) Mol. Syst. Biol. , vol.2 , Issue.1
    • Feist, A.M.1    Scholten, J.2    Palsson, B.Ø.3    Brockman, F.J.4    Ideker, T.5
  • 12
    • 0030609337 scopus 로고    scopus 로고
    • Efficiency of ammonia and phosphorus removal from a Colombian agroindustrial wastewater by the microalgae Chlorella vulgaris and Scenedesmus dimorphus
    • González, L.E., Cañizares, R.O., Baena, S., Efficiency of ammonia and phosphorus removal from a Colombian agroindustrial wastewater by the microalgae Chlorella vulgaris and Scenedesmus dimorphus. Bioresour. Technol. 60:3 (1997), 259–262.
    • (1997) Bioresour. Technol. , vol.60 , Issue.3 , pp. 259-262
    • González, L.E.1    Cañizares, R.O.2    Baena, S.3
  • 13
    • 43549102657 scopus 로고    scopus 로고
    • Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances
    • Hu, Q., Sommerfeld, M., Jarvis, E., Ghirardi, M., Posewitz, M., Seibert, M., Darzins, A., Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances. Plant J. 54:4 (2008), 621–639.
    • (2008) Plant J. , vol.54 , Issue.4 , pp. 621-639
    • Hu, Q.1    Sommerfeld, M.2    Jarvis, E.3    Ghirardi, M.4    Posewitz, M.5    Seibert, M.6    Darzins, A.7
  • 14
    • 51049107514 scopus 로고    scopus 로고
    • Group contribution method for thermodynamic analysis of complex metabolic networks
    • Jankowski, M.D., Henry, C.S., Broadbelt, L.J., Hatzimanikatis, V., Group contribution method for thermodynamic analysis of complex metabolic networks. Biophys. J. 95:3 (2008), 1487–1499.
    • (2008) Biophys. J. , vol.95 , Issue.3 , pp. 1487-1499
    • Jankowski, M.D.1    Henry, C.S.2    Broadbelt, L.J.3    Hatzimanikatis, V.4
  • 15
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M., KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40:D1 (2012), D109–D114.
    • (2012) Nucleic Acids Res. , vol.40 , Issue.D1 , pp. D109-D114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 16
    • 0029199834 scopus 로고
    • A chitin-like glycan in the cell wall of a Chlorella sp. (Chlorococcales, Chlorophyceae)
    • Kapaun, E., Reisser, W., A chitin-like glycan in the cell wall of a Chlorella sp. (Chlorococcales, Chlorophyceae). Planta 197:4 (1995), 577–582.
    • (1995) Planta , vol.197 , Issue.4 , pp. 577-582
    • Kapaun, E.1    Reisser, W.2
  • 17
    • 11244333081 scopus 로고    scopus 로고
    • Properties of metabolic networks: structure versus function
    • Mahadevan, R., Palsson, B., Properties of metabolic networks: structure versus function. Biophys. J. 88:1 (2005), L07–L09.
    • (2005) Biophys. J. , vol.88 , Issue.1 , pp. L07-L09
    • Mahadevan, R.1    Palsson, B.2
  • 18
    • 0035197070 scopus 로고    scopus 로고
    • Hydrogen production. Green algae as a source of energy
    • Melis, A., Happe, T., Hydrogen production. Green algae as a source of energy. Plant Physiol. 127:3 (2001), 740–748.
    • (2001) Plant Physiol. , vol.127 , Issue.3 , pp. 740-748
    • Melis, A.1    Happe, T.2
  • 19
    • 80053132399 scopus 로고    scopus 로고
    • Evolutionary significance of an algal gene encoding an [FeFe]-hydrogenase with F-domain homology and hydrogenase activity in Chlorella variabilis NC64A
    • Meuser, J.E., Boyd, E.S., Ananyev, G., Karns, D., Radakovits, R., Murthy, U.N., Ghirardi, M.L., Dismukes, G.C., Peters, J.W., Posewitz, M.C., Evolutionary significance of an algal gene encoding an [FeFe]-hydrogenase with F-domain homology and hydrogenase activity in Chlorella variabilis NC64A. Planta 234:4 (2011), 829–843.
    • (2011) Planta , vol.234 , Issue.4 , pp. 829-843
    • Meuser, J.E.1    Boyd, E.S.2    Ananyev, G.3    Karns, D.4    Radakovits, R.5    Murthy, U.N.6    Ghirardi, M.L.7    Dismukes, G.C.8    Peters, J.W.9    Posewitz, M.C.10
  • 20
    • 65349136371 scopus 로고    scopus 로고
    • Development of a standardized methodology for quantifying total chlorophyll and carotenoids from foliage of hardwood and conifer tree species
    • Minocha, R., Martinez, G., Lyons, B., Long, S., Development of a standardized methodology for quantifying total chlorophyll and carotenoids from foliage of hardwood and conifer tree species. Can. J. For. Res. 39:4 (2009), 849–861.
    • (2009) Can. J. For. Res. , vol.39 , Issue.4 , pp. 849-861
    • Minocha, R.1    Martinez, G.2    Lyons, B.3    Long, S.4
  • 21
    • 84991835758 scopus 로고    scopus 로고
    • Engine worthy fatty acid methyl ester (biodiesel) from naturally occurring marine microalgal mats and marine microalgae cultured in open salt pans together with value addition of co-products, Google Patents.
    • Mishra, S.C.P., Ghosh, P.K., Gandhi, M.R., Bhattacharya, S., Maiti, S., Upadhyay, S.C., Ghosh, A., Prasad, R.B.N., Kanjilal, S., Mishra, S.K. 2012. Engine worthy fatty acid methyl ester (biodiesel) from naturally occurring marine microalgal mats and marine microalgae cultured in open salt pans together with value addition of co-products, Google Patents.
    • (2012)
    • Mishra, S.C.P.1    Ghosh, P.K.2    Gandhi, M.R.3    Bhattacharya, S.4    Maiti, S.5    Upadhyay, S.C.6    Ghosh, A.7    Prasad, R.B.N.8    Kanjilal, S.9    Mishra, S.K.10
  • 22
    • 84875159824 scopus 로고    scopus 로고
    • Homology modeling and docking studies of FabH (β-ketoacyl-ACP synthase III) enzyme involved in type II fatty acid biosynthesis of Chlorella variabilis: a potential algal feedstock for biofuel production
    • Misra, N., Patra, M.C., Panda, P.K., Sukla, L.B., Mishra, B.K., Homology modeling and docking studies of FabH (β-ketoacyl-ACP synthase III) enzyme involved in type II fatty acid biosynthesis of Chlorella variabilis: a potential algal feedstock for biofuel production. J. Biomol. Struct. Dyn. 31:3 (2013), 241–257.
    • (2013) J. Biomol. Struct. Dyn. , vol.31 , Issue.3 , pp. 241-257
    • Misra, N.1    Patra, M.C.2    Panda, P.K.3    Sukla, L.B.4    Mishra, B.K.5
  • 26
    • 9544253891 scopus 로고    scopus 로고
    • Genome-scale models of microbial cells: evaluating the consequences of constraints
    • Price, N.D., Reed, J.L., Palsson, B.Ø., Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2:11 (2004), 886–897.
    • (2004) Nat. Rev. Microbiol. , vol.2 , Issue.11 , pp. 886-897
    • Price, N.D.1    Reed, J.L.2    Palsson, B.Ø.3
  • 27
    • 73749084153 scopus 로고    scopus 로고
    • 2 sequestration through calcite deposition by Chlorella sp. and Spirulina platensis in a mini-raceway pond
    • 2 sequestration through calcite deposition by Chlorella sp. and Spirulina platensis in a mini-raceway pond. Bioresour. Technol. 101:8 (2010), 2616–2622.
    • (2010) Bioresour. Technol. , vol.101 , Issue.8 , pp. 2616-2622
    • Ramanan, R.1    Kannan, K.2    Deshkar, A.3    Yadav, R.4    Chakrabarti, T.5
  • 30
    • 75149129569 scopus 로고    scopus 로고
    • A protocol for generating a high-quality genome-scale metabolic reconstruction
    • Thiele, I., Palsson, B.Ø., A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc. 5:1 (2010), 93–121.
    • (2010) Nat. Protoc. , vol.5 , Issue.1 , pp. 93-121
    • Thiele, I.1    Palsson, B.Ø.2
  • 31
    • 0025833760 scopus 로고
    • Viruses and virus like particles of eukaryotic algae
    • Van Etten, J.L., Lane, L.C., Meints, R.H., Viruses and virus like particles of eukaryotic algae. Microbiol. Rev., 55(4), 1991, 586.
    • (1991) Microbiol. Rev. , vol.55 , Issue.4 , pp. 586
    • Van Etten, J.L.1    Lane, L.C.2    Meints, R.H.3
  • 32
    • 84862812840 scopus 로고    scopus 로고
    • Marine algae as a potential pharmaceutical source for anti-allergic therapeutics
    • Vo, T.-S., Ngo, D.-H., Kim, S.-K., Marine algae as a potential pharmaceutical source for anti-allergic therapeutics. Process Biochem. 47:3 (2012), 386–394.
    • (2012) Process Biochem. , vol.47 , Issue.3 , pp. 386-394
    • Vo, T.-S.1    Ngo, D.-H.2    Kim, S.-K.3
  • 33
    • 0027954116 scopus 로고
    • Blue light-induced lethality of a cell wall-deficient mutant of the unicellular green alga Chlamydomonas reinhardtii
    • Voigt, J., Münzner, P., Blue light-induced lethality of a cell wall-deficient mutant of the unicellular green alga Chlamydomonas reinhardtii. Plant Cell Physiol. 35:1 (1994), 99–106.
    • (1994) Plant Cell Physiol. , vol.35 , Issue.1 , pp. 99-106
    • Voigt, J.1    Münzner, P.2
  • 34
    • 33750374202 scopus 로고    scopus 로고
    • High quality biodiesel production from a microalga Chlorella protothecoides by heterotrophic growth in fermenters
    • Xu, H., Miao, X., Wu, Q., High quality biodiesel production from a microalga Chlorella protothecoides by heterotrophic growth in fermenters. J. Biotechnol. 126:4 (2006), 499–507.
    • (2006) J. Biotechnol. , vol.126 , Issue.4 , pp. 499-507
    • Xu, H.1    Miao, X.2    Wu, Q.3
  • 35
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
    • Yu, C.S., Lin, C.J., Hwang, J.K., Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Sci. 13:5 (2009), 1402–1406.
    • (2009) Protein Sci. , vol.13 , Issue.5 , pp. 1402-1406
    • Yu, C.S.1    Lin, C.J.2    Hwang, J.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.