-
1
-
-
84871524878
-
Identification of 100 fundamental ecological questions
-
Sutherland, W. J., et al. Identification of 100 fundamental ecological questions. J Ecol 101, 58-67 (2013).
-
(2013)
J Ecol
, vol.101
, pp. 58-67
-
-
Sutherland, W.J.1
-
2
-
-
33748782805
-
Quantifying the evidence for biodiversity effects on ecosystem functioning and services
-
Balvanera, P., et al. Quantifying the evidence for biodiversity effects on ecosystem functioning and services. Ecol Lett 9, 1146-1156 (2006).
-
(2006)
Ecol Lett
, vol.9
, pp. 1146-1156
-
-
Balvanera, P.1
-
3
-
-
84880922072
-
Loss in microbial diversity affects nitrogen cycling in soil
-
Philippot, L., et al. Loss in microbial diversity affects nitrogen cycling in soil. ISME J 7, 1609-1619 (2013).
-
(2013)
ISME J
, vol.7
, pp. 1609-1619
-
-
Philippot, L.1
-
4
-
-
84942504933
-
Testing biodiversity-ecosystem functioning relationship in the worlds largest grassland: Overview of the IMGRE project
-
doi: 10.1007/s10980-015-0155-y
-
Wu, J., et al. Testing biodiversity-ecosystem functioning relationship in the worlds largest grassland: overview of the IMGRE project. Landscape Ecol doi: 10.1007/s10980-015-0155-y (2015).
-
(2015)
Landscape Ecol
-
-
Wu, J.1
-
5
-
-
41049112088
-
Mechanisms linking diversity, productivity and invasibility in experimental bacterial communities
-
Hodgson, D. J., Rainey, P. B. & Buckling, A. Mechanisms linking diversity, productivity and invasibility in experimental bacterial communities. Proc Biol Sci 269, 2277-2283 (2002).
-
(2002)
Proc Biol Sci
, vol.269
, pp. 2277-2283
-
-
Hodgson, D.J.1
Rainey, P.B.2
Buckling, A.3
-
6
-
-
24144447031
-
The contribution of species richness and composition to bacterial services
-
Bell, T., Newman, J. A., Silverman, B. W., Turner, S. L. & Lilley, A. K. The contribution of species richness and composition to bacterial services. Nature 436, 1157-1160 (2005).
-
(2005)
Nature
, vol.436
, pp. 1157-1160
-
-
Bell, T.1
Newman, J.A.2
Silverman, B.W.3
Turner, S.L.4
Lilley, A.K.5
-
7
-
-
84901020392
-
Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean
-
Pedler, B. E., Aluwihare, L. I. & Azam, F. Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean. Proc Natl Acad Sci USA 111, 7202-7207 (2014).
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 7202-7207
-
-
Pedler, B.E.1
Aluwihare, L.I.2
Azam, F.3
-
8
-
-
0032487856
-
Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity
-
van der Heijden, M. G. A., et al. Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature 396, 69-72 (1998).
-
(1998)
Nature
, vol.396
, pp. 69-72
-
-
Van Der Heijden, M.G.A.1
-
9
-
-
84924943734
-
Effects of sulfamethazine on denitrification and the associated N2O release in estuarine and coastal sediments
-
Hou, L., et al. Effects of sulfamethazine on denitrification and the associated N2O release in estuarine and coastal sediments. Environ Sci Technol 49, 326-333 (2015).
-
(2015)
Environ Sci Technol
, vol.49
, pp. 326-333
-
-
Hou, L.1
-
10
-
-
84925539550
-
Microbiological functioning, diversity, and structure of bacterial communities in ultramafic soils from a tropical savanna
-
Pessoa-Filho, M., et al. Microbiological functioning, diversity, and structure of bacterial communities in ultramafic soils from a tropical savanna. Antonie Van Leeuwenhoek 107, 935-949 (2015).
-
(2015)
Antonie van Leeuwenhoek
, vol.107
, pp. 935-949
-
-
Pessoa-Filho, M.1
-
11
-
-
84902209896
-
Bacterial targets as potential indicators of diesel fuel toxicity in subantarctic soils
-
van Dorst, J., Siciliano, S. D., Winsley, T., Snape, I. & Ferrari, B. C. Bacterial targets as potential indicators of diesel fuel toxicity in subantarctic soils. Appl Environ Microbiol 80, 4021-4033 (2014).
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 4021-4033
-
-
Van Dorst, J.1
Siciliano, S.D.2
Winsley, T.3
Snape, I.4
Ferrari, B.C.5
-
12
-
-
84871883769
-
Impact of long-term diesel contamination on soil microbial community structure
-
Sutton, N. B., et al. Impact of long-term diesel contamination on soil microbial community structure. Appl Environ Microbiol 79, 619-630 (2013).
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 619-630
-
-
Sutton, N.B.1
-
13
-
-
0029048826
-
Mechanisms of membrane toxicity of hydrocarbons
-
Sikkema, J., de Bont, J. A. & Poolman, B. Mechanisms of membrane toxicity of hydrocarbons. Microbiol Rev 59, 201-222 (1995).
-
(1995)
Microbiol Rev
, vol.59
, pp. 201-222
-
-
Sikkema, J.1
De Bont, J.A.2
Poolman, B.3
-
14
-
-
0019431376
-
Microbial degradation of petroleum hydrocarbons: An environmental perspective
-
Atlas, R. M. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiol Rev 45, 180-209 (1981).
-
(1981)
Microbiol Rev
, vol.45
, pp. 180-209
-
-
Atlas, R.M.1
-
15
-
-
84878307537
-
Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance
-
Bell, T. H., et al. Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance. ISME J 7, 1200-1210 (2013a).
-
(2013)
ISME J
, vol.7
, pp. 1200-1210
-
-
Bell, T.H.1
-
16
-
-
14344260968
-
Bacterial diversity promotes community stability and functional resilience after perturbation
-
Girvan, M. S., Campbell, C. D., Killham, K., Prosser, J. I. & Glover, L. A. Bacterial diversity promotes community stability and functional resilience after perturbation. Environ Microbiol 7, 301-313 (2005).
-
(2005)
Environ Microbiol
, vol.7
, pp. 301-313
-
-
Girvan, M.S.1
Campbell, C.D.2
Killham, K.3
Prosser, J.I.4
Glover, L.A.5
-
17
-
-
0034786918
-
An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities
-
Griffiths, B. S., et al. An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities. Soil Biol Biochem 33, 1713-1722 (2001).
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 1713-1722
-
-
Griffiths, B.S.1
-
18
-
-
34547660222
-
Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance
-
Wertz, S., et al. Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance. Environ Microbiol 9, 2211-2219 (2007).
-
(2007)
Environ Microbiol
, vol.9
, pp. 2211-2219
-
-
Wertz, S.1
-
19
-
-
84904550694
-
Effect of red clay on diesel bioremediation and soil bacterial community
-
Jung, J., Choi, S., Hong, H., Sung, J. S. & Park, W. Effect of red clay on diesel bioremediation and soil bacterial community. Microb Ecol 68, 314-323 (2014).
-
(2014)
Microb Ecol
, vol.68
, pp. 314-323
-
-
Jung, J.1
Choi, S.2
Hong, H.3
Sung, J.S.4
Park, W.5
-
20
-
-
84856369187
-
Microbial diversity determines the invasion of soil by a bacterial pathogen
-
van Elsas, J. D., et al. Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci USA 109, 1159-1164 (2012).
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 1159-1164
-
-
Van Elsas, J.D.1
-
21
-
-
74049145801
-
Protection against diesel oil toxicity by sodium chloride-induced exopolysaccharides in Acinetobacter sp. Strain DR1
-
Kang, Y. S. & Park, W. Protection against diesel oil toxicity by sodium chloride-induced exopolysaccharides in Acinetobacter sp. strain DR1. J Biosci Bioeng 109, 118-123 (2010).
-
(2010)
J Biosci Bioeng
, vol.109
, pp. 118-123
-
-
Kang, Y.S.1
Park, W.2
-
22
-
-
84897645385
-
Stability of soil microbial structure and activity depends on microbial diversity
-
Tardy, V., et al. Stability of soil microbial structure and activity depends on microbial diversity. Environ Microbiol Rep 6, 173-183 (2014).
-
(2014)
Environ Microbiol Rep
, vol.6
, pp. 173-183
-
-
Tardy, V.1
-
23
-
-
79951926011
-
Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils
-
Nacke, H., et al. Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS One 6, e17000 (2011).
-
(2011)
PLoS One
, vol.6
, pp. e17000
-
-
Nacke, H.1
-
24
-
-
84901036143
-
Diverse alkane hydroxylase genes in microorganisms and environments
-
Nie, Y., et al. Diverse alkane hydroxylase genes in microorganisms and environments. Sci Rep 4, 4968 (2014).
-
(2014)
Sci Rep
, vol.4
, pp. 4968
-
-
Nie, Y.1
-
25
-
-
0035511721
-
Two distinct monooxygenases for alkane oxidation in Nocardioides sp. Strain CF8
-
Hamamura, N., Yeager, C. M. & Arp, D. J. Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8. Appl Environ Microbiol 67, 4992-4998 (2001).
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4992-4998
-
-
Hamamura, N.1
Yeager, C.M.2
Arp, D.J.3
-
26
-
-
84907651783
-
Biodegradation of variable-chain-length n-alkanes in Rhodococcus opacus R7 and the involvement of an alkane hydroxylase system in the metabolism
-
Zampolli, J., Collina, E., Lasagni, M. & Di Gennaro, P. Biodegradation of variable-chain-length n-alkanes in Rhodococcus opacus R7 and the involvement of an alkane hydroxylase system in the metabolism. AMB Express 4, 73 (2014).
-
(2014)
AMB Express
, vol.4
, pp. 73
-
-
Zampolli, J.1
Collina, E.2
Lasagni, M.3
Di Gennaro, P.4
-
27
-
-
0029971654
-
Uptake and utilization of n-octacosane and n-nonacosane by Arthrobacter nicotianae KCC B35
-
Radwan, S. S., Sorkhoh, N. A., Felzmann, H. & El-Desouky, A. F. Uptake and utilization of n-octacosane and n-nonacosane by Arthrobacter nicotianae KCC B35. J Appl Bacteriol 80, 370-374 (1996).
-
(1996)
J Appl Bacteriol
, vol.80
, pp. 370-374
-
-
Radwan, S.S.1
Sorkhoh, N.A.2
Felzmann, H.3
El-Desouky, A.F.4
-
28
-
-
84955745892
-
Effects of diurnal temperature variation on microbial community and petroleum hydrocarbon biodegradation in contaminated soils from a sub-Arctic site
-
doi: 10.1111/1462-2920.12846
-
Akbari, A. & Ghoshal, S. Effects of diurnal temperature variation on microbial community and petroleum hydrocarbon biodegradation in contaminated soils from a sub-Arctic site. Environ Microbiol doi: 10.1111/1462-2920.12846 (2015).
-
(2015)
Environ Microbiol
-
-
Akbari, A.1
Ghoshal, S.2
-
29
-
-
84859911168
-
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
-
Fierer, N., et al. Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients. ISME J 6, 1007-1017 (2012).
-
(2012)
ISME J
, vol.6
, pp. 1007-1017
-
-
Fierer, N.1
-
30
-
-
84927941495
-
Characterization of the medium-and long-chain n-alkanes degrading Pseudomonas aeruginosa strain SJTD-1 and its alkane hydroxylase genes
-
Liu, H., Xu, J., Liang, R. & Liu, J. Characterization of the medium-and long-chain n-alkanes degrading Pseudomonas aeruginosa strain SJTD-1 and its alkane hydroxylase genes. PLoS One 9, e105506 (2014).
-
(2014)
PLoS One
, vol.9
, pp. e105506
-
-
Liu, H.1
Xu, J.2
Liang, R.3
Liu, J.4
-
31
-
-
80255123474
-
And diversity of n-alkane-degrading bacteria in a forest soil cocontaminated with hydrocarbons and metals: A molecular study on alkB homologous genes
-
Perez-de-Mora, A., Engel, M. & Schloter, M. Abundance and diversity of n-alkane-degrading bacteria in a forest soil cocontaminated with hydrocarbons and metals: a molecular study on alkB homologous genes. Microb Ecol 62, 959-972 (2011).
-
(2011)
Microb Ecol
, vol.62
, pp. 959-972
-
-
Perez-De-Mora, A.1
Engel, M.2
Abundance, S.M.3
-
32
-
-
84855714036
-
Metagenomic analysis of the bioremediation of diesel-contaminated Canadian high arctic soils
-
Yergeau, E., Sanschagrin, S., Beaumier, D. & Greer, C. W. Metagenomic analysis of the bioremediation of diesel-contaminated Canadian high arctic soils. PLoS One 7, e30058 (2012).
-
(2012)
PLoS One
, vol.7
, pp. e30058
-
-
Yergeau, E.1
Sanschagrin, S.2
Beaumier, D.3
Greer, C.W.4
-
33
-
-
79951810368
-
Functional gene diversity of soil microbial communities from five oil-contaminated fields in China
-
Liang, Y., et al. Functional gene diversity of soil microbial communities from five oil-contaminated fields in China. ISME J 5, 403-413 (2011).
-
(2011)
ISME J
, vol.5
, pp. 403-413
-
-
Liang, Y.1
-
34
-
-
84946474082
-
Molecular mechanisms of enhanced bacterial growth on hexadecane with red clay
-
Jung, J., et al. Molecular mechanisms of enhanced bacterial growth on hexadecane with red clay. Microb Ecol 70, 912-921 (2015).
-
(2015)
Microb Ecol
, vol.70
, pp. 912-921
-
-
Jung, J.1
-
35
-
-
84888439667
-
Enhanced ex situ bioremediation of crude oil contaminated beach sand by supplementation with nutrients and rhamnolipids
-
Nikolopoulou, M., Pasadakis, N., Norf, H. & Kalogerakis, N. Enhanced ex situ bioremediation of crude oil contaminated beach sand by supplementation with nutrients and rhamnolipids. Mar Pollut Bull. 77, 37-44 (2013).
-
(2013)
Mar Pollut Bull.
, vol.77
, pp. 37-44
-
-
Nikolopoulou, M.1
Pasadakis, N.2
Norf, H.3
Kalogerakis, N.4
-
36
-
-
84879411941
-
Alteration of microbial community structure affects diesel biodegradation in an Arctic soil
-
Bell, T. H., Yergeau, E., Juck, D. F., Whyte, L. G. & Greer, C. W. Alteration of microbial community structure affects diesel biodegradation in an Arctic soil. FEMS Microbiol Ecol 85, 51-61 (2013b).
-
(2013)
FEMS Microbiol Ecol
, vol.85
, pp. 51-61
-
-
Bell, T.H.1
Yergeau, E.2
Juck, D.F.3
Whyte, L.G.4
Greer, C.W.5
-
37
-
-
84924943734
-
Effects of sulfamethazine on denitrification and the associated N2O release in estuarine and coastal sediments
-
Hou, L., et al. Effects of sulfamethazine on denitrification and the associated N2O release in estuarine and coastal sediments. Environ Sci Technol 49, 326-333 (2015).
-
(2015)
Environ Sci Technol
, vol.49
, pp. 326-333
-
-
Hou, L.1
-
38
-
-
0033959405
-
Monitoring of bioremediation by soil biological activities
-
Margesin, R., Zimmerbauer, A. & Schinner, F. Monitoring of bioremediation by soil biological activities. Chemosphere 40, 339-346 (2000).
-
(2000)
Chemosphere
, vol.40
, pp. 339-346
-
-
Margesin, R.1
Zimmerbauer, A.2
Schinner, F.3
-
39
-
-
0034524672
-
Limitations of soil enzymes as indicators of soil pollution
-
Trasar-Cepedaa, C., Leirosb, M. C., Seoaneb, S. & Gil-Sotresb, F. Limitations of soil enzymes as indicators of soil pollution. Soil Biol Biochem 32, 1867-1875 (2000).
-
(2000)
Soil Biol Biochem
, vol.32
, pp. 1867-1875
-
-
Trasar-Cepedaa, C.1
Leirosb, M.C.2
Seoaneb, S.3
Gil-Sotresb, F.4
-
40
-
-
84862812854
-
Complexity of cell-cell interactions between Pseudomonas sp. AS1 and Acinetobacter oleivorans DR1: Metabolic commensalism, biofilm formation and quorum quenching
-
Seo, H., et al. Complexity of cell-cell interactions between Pseudomonas sp. AS1 and Acinetobacter oleivorans DR1: metabolic commensalism, biofilm formation and quorum quenching. Res Microbiol 163, 173-181 (2012).
-
(2012)
Res Microbiol
, vol.163
, pp. 173-181
-
-
Seo, H.1
-
41
-
-
77952669485
-
Structural and functional response of soil microbiota to addition of plant substrate are moderated by soil Cu levels
-
Wakeline, S. A., et al. Structural and functional response of soil microbiota to addition of plant substrate are moderated by soil Cu levels. Biol Fertil Soils 46, 333-342 (2010).
-
(2010)
Biol Fertil Soils
, vol.46
, pp. 333-342
-
-
Wakeline, S.A.1
-
42
-
-
79952452209
-
Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils
-
Macdonald, C. A., et al. Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biol Biochem 43, 932-941 (2011).
-
(2011)
Soil Biol Biochem
, vol.43
, pp. 932-941
-
-
Macdonald, C.A.1
-
43
-
-
85047676888
-
Influence of heavy metals on the functional diversity of soil microbial communities
-
Kandeler, E., Kampichler, C. & Horak, O. Influence of heavy metals on the functional diversity of soil microbial communities. Biol Fertil Soils 23, 299-306 (1996).
-
(1996)
Biol Fertil Soils
, vol.23
, pp. 299-306
-
-
Kandeler, E.1
Kampichler, C.2
Horak, O.3
-
44
-
-
0035795219
-
And evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
-
Watanabe, K., Kodama, Y. & Harayama, S. Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiol Methods 44, 253-262 (2001).
-
(2001)
J Microbiol Methods
, vol.44
, pp. 253-262
-
-
Watanabe, K.1
Kodama, Y.2
Design, H.S.3
-
45
-
-
82855165113
-
Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils
-
Jung, J., et al. Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils. Res Microbiol 162, 1018-1026 (2011).
-
(2011)
Res Microbiol
, vol.162
, pp. 1018-1026
-
-
Jung, J.1
-
46
-
-
53549118607
-
The metagenomics RAST server -a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer, F., et al. The metagenomics RAST server -a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9, 386 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
-
47
-
-
84911429654
-
STAMP: Statistical analysis of taxonomic and functional profiles
-
Parks, D. H., Tyson, G. W., Hugenholtz, P. & Beiko, R. G. STAMP: Statistical analysis of taxonomic and functional profiles. Bioinformatics 30, 3123-3124 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 3123-3124
-
-
Parks, D.H.1
Tyson, G.W.2
Hugenholtz, P.3
Beiko, R.G.4
-
48
-
-
0013904956
-
The aerobic pseudomonads: A taxonomic study
-
Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271 (1966).
-
(1966)
J Gen Microbiol
, vol.43
, pp. 159-271
-
-
Stanier, R.Y.1
Palleroni, N.J.2
Doudoroff, M.3
-
49
-
-
84871807595
-
Effects of nutritional input and diesel contamination on soil enzyme activities and microbial communities in Antarctic soils
-
Han, J., Jung, J., Hyun, S., Park, H. & Park, W. Effects of nutritional input and diesel contamination on soil enzyme activities and microbial communities in Antarctic soils. J Microbiol 50, 916-924 (2012).
-
(2012)
J Microbiol
, vol.50
, pp. 916-924
-
-
Han, J.1
Jung, J.2
Hyun, S.3
Park, H.4
Park, W.5
-
50
-
-
84905396453
-
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
-
Singh, B. K., et al. Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environ Microbiol 16, 2408-2420 (2014).
-
(2014)
Environ Microbiol
, vol.16
, pp. 2408-2420
-
-
Singh, B.K.1
-
51
-
-
84902665818
-
And multifunctionality in a microbial community: A novel theoretical approach to quantify functional redundancy
-
Miki, T., Yokokawa, T. & Matsui, K. Biodiversity and multifunctionality in a microbial community: a novel theoretical approach to quantify functional redundancy. Proc Biol Sci 281, 20132498 (2014).
-
(2014)
Proc Biol Sci
, vol.281
, pp. 20132498
-
-
Miki, T.1
Yokokawa, T.2
Biodiversity, M.K.3
|