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Applied and Environmental Microbiology
Volumn 80, Issue 13, 2014, Pages 4021-4033
Bacterial targets as potential indicators of diesel fuel toxicity in subantarctic soils
Author keywords

[No Author keywords available]
Indexed keywords

DIESEL FUELS; GENES; NITROGEN; SOILS; TOXICITY;
EID: 84902209896     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03939-13     Document Type: Article
Times cited : (74)
References (65)
  • 1
    • 84902145053 scopus 로고    scopus 로고
    • AMAP. AMAP assessment report: Arctic pollution issues. Arctic Monitoring and Assessment Programme, Oslo, Norway.
    • AMAP. 1998. AMAP assessment report: Arctic pollution issues, p 859. Arctic Monitoring and Assessment Programme, Oslo, Norway.
    • (1998) , pp. 859
  • 2
    • 0032858803 scopus 로고    scopus 로고
    • Controls on soil biodiversity: insights from extreme environments
    • Wall DH, Virginia RA. 1999. Controls on soil biodiversity: insights from extreme environments. Appl. Soil Ecol. 13:137-150. http://dx.doi.org/10.1016/S0929-1393(99)00029-3.
    • (1999) Appl. Soil Ecol , vol.13 , pp. 137-150
    • Wall, D.H.1    Virginia, R.A.2
  • 4
    • 55249108747 scopus 로고    scopus 로고
    • A weight-of-evidence approach for the integration of environmental "triad" data to assess ecological risk and biological vulnerability
    • Dagnino A, Sforzini S, Dondero F, Fenoglio S, Bona E, Jensen J, Viarengo A. 2008. A weight-of-evidence approach for the integration of environmental "triad" data to assess ecological risk and biological vulnerability. Integr. Environ. Assess. Manag. 4:314-326. http://dx.doi.org/10.1897/IEAM_2007-067.1.
    • (2008) Integr. Environ. Assess. Manag , vol.4 , pp. 314-326
    • Dagnino, A.1    Sforzini, S.2    Dondero, F.3    Fenoglio, S.4    Bona, E.5    Jensen, J.6    Viarengo, A.7
  • 5
    • 56049095038 scopus 로고    scopus 로고
    • Making species salinity sensitivity distributions reflective of naturally occurring communities: using rapid testing and Bayesian statistics
    • Hickey GL, Kefford BJ, Dunlop JE, Craig PS. 2008. Making species salinity sensitivity distributions reflective of naturally occurring communities: using rapid testing and Bayesian statistics. Environ. Toxicol. Chem. 27:2403-2411. http://dx.doi.org/10.1897/08-079.1.
    • (2008) Environ. Toxicol. Chem , vol.27 , pp. 2403-2411
    • Hickey, G.L.1    Kefford, B.J.2    Dunlop, J.E.3    Craig, P.S.4
  • 6
    • 30944466554 scopus 로고    scopus 로고
    • What is meant by "95% of species"? An argument for the inclusion of rapid tolerance testing
    • Kefford BJ, Palmer CG, Jooste S, Warne MSJ, Nugegoda D. 2005. What is meant by "95% of species"? An argument for the inclusion of rapid tolerance testing. Human Ecol. Risk Assess. 11:1025-1046. http://dx.doi.org/10.1080/10807030500257770.
    • (2005) Human Ecol. Risk Assess , vol.11 , pp. 1025-1046
    • Kefford, B.J.1    Palmer, C.G.2    Jooste, S.3    Warne, M.S.J.4    Nugegoda, D.5
  • 7
    • 3242664049 scopus 로고    scopus 로고
    • Microorganisms as indicators of soil health
    • NERI, (ed), 338. Institute NER, Roskilde, Denmark
    • Neilson MN, Winding A. 2002. Microorganisms as indicators of soil health, p 14-16. In NERI (ed), NERI technical report no. 338. Institute NER, Roskilde, Denmark.
    • (2002) NERI technical report no , pp. 14-16
    • Neilson, M.N.1    Winding, A.2
  • 8
    • 21744448980 scopus 로고    scopus 로고
    • Characterization of soil health in an Italian polluted site by using microorganisms as bioindicators
    • Avidano L, Gamalero E, Cossa G, Carraro E. 2005. Characterization of soil health in an Italian polluted site by using microorganisms as bioindicators. Appl. Soil Ecol. 30:21-33. http://dx.doi.org/10.1016/j.apsoil.2005.01.003.
    • (2005) Appl. Soil Ecol , vol.30 , pp. 21-33
    • Avidano, L.1    Gamalero, E.2    Cossa, G.3    Carraro, E.4
  • 9
    • 34249000389 scopus 로고    scopus 로고
    • Soil biogeochemical toxicity end points for sub-Antarctic islands contaminated with petroleum hydrocarbons
    • Schafer AN, Snape I, Siciliano SD. 2007. Soil biogeochemical toxicity end points for sub-Antarctic islands contaminated with petroleum hydrocarbons. Environ. Toxicol. Chem. 26:890-897. http://dx.doi.org/10.1897/06-420R.1.
    • (2007) Environ. Toxicol. Chem , vol.26 , pp. 890-897
    • Schafer, A.N.1    Snape, I.2    Siciliano, S.D.3
  • 10
    • 84873523036 scopus 로고    scopus 로고
    • Toward the development of microbial indicators for wetland assessment
    • Sims A, Zhang Y, Gajaraj S, Brown PB, Hu Z. 2013. Toward the development of microbial indicators for wetland assessment. Water Res. 47:1711-1725. http://dx.doi.org/10.1016/j.watres.2013.01.023.
    • (2013) Water Res , vol.47 , pp. 1711-1725
    • Sims, A.1    Zhang, Y.2    Gajaraj, S.3    Brown, P.B.4    Hu, Z.5
  • 11
    • 84879818490 scopus 로고    scopus 로고
    • Evidence of microbial regulation of biogeochemical cycles from a study on methane flux and land use change
    • Nazaries L, Pan Y, Bodrossy L, Baggs EM, Millard P, Murrell JC, Singh BK. 2013. Evidence of microbial regulation of biogeochemical cycles from a study on methane flux and land use change. Appl. Environ. Microbiol. 79:4031-4040. http://dx.doi.org/10.1128/AEM.00095-13.
    • (2013) Appl. Environ. Microbiol , vol.79 , pp. 4031-4040
    • Nazaries, L.1    Pan, Y.2    Bodrossy, L.3    Baggs, E.M.4    Millard, P.5    Murrell, J.C.6    Singh, B.K.7
  • 12
    • 62149135642 scopus 로고    scopus 로고
    • Influence of nutrients addition and bioaugmentation on the hydrocarbon biodegradation of a chronically contaminated Antarctic soil
    • Ruberto L, Dias R, Lo Balbo A, Vazquez SC, Hernandez EA, MacCormack WP. 2009. Influence of nutrients addition and bioaugmentation on the hydrocarbon biodegradation of a chronically contaminated Antarctic soil. J. Appl. Microbiol. 106:1101-1110. http://dx.doi.org/10.1111/j.1365-2672.2008.04073.x.
    • (2009) J. Appl. Microbiol , vol.106 , pp. 1101-1110
    • Ruberto, L.1    Dias, R.2    Lo Balbo, A.3    Vazquez, S.C.4    Hernandez, E.A.5    MacCormack, W.P.6
  • 13
    • 1442301005 scopus 로고    scopus 로고
    • Hydrocarbon spills on Antarctic soils: effects and management
    • Aislabie JM, Balks MR, Foght JM, Waterhouse EJ. 2004. Hydrocarbon spills on Antarctic soils: effects and management. Environ. Sci. Technol. 38:1265-1274. http://dx.doi.org/10.1021/es0305149.
    • (2004) Environ. Sci. Technol , vol.38 , pp. 1265-1274
    • Aislabie, J.M.1    Balks, M.R.2    Foght, J.M.3    Waterhouse, E.J.4
  • 14
    • 19544367285 scopus 로고    scopus 로고
    • Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica
    • Saul DJ, Aislabie JM, Brown CE, Harris L, Foght JM. 2005. Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica. FEMS Microbiol. Ecol. 53:141-155. http://dx.doi.org/10.1016/j.femsec.2004.11.007.
    • (2005) FEMS Microbiol. Ecol , vol.53 , pp. 141-155
    • Saul, D.J.1    Aislabie, J.M.2    Brown, C.E.3    Harris, L.4    Foght, J.M.5
  • 15
    • 33748796867 scopus 로고    scopus 로고
    • Microbial population dynamics associated with crude-oil biodegradation in diverse soils
    • Hamamura N, Olson SH, Ward DM, Inskeep WP. 2006. Microbial population dynamics associated with crude-oil biodegradation in diverse soils. Appl. Environ. Microbiol. 72:6316-6324. http://dx.doi.org/10.1128/AEM.01015-06.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6316-6324
    • Hamamura, N.1    Olson, S.H.2    Ward, D.M.3    Inskeep, W.P.4
  • 16
    • 79956191284 scopus 로고    scopus 로고
    • Effect of pyrene on denitrification activity and abundance and composition of denitrifying community in an agricultural soil
    • Guo GX, Deng H, Qiao M, Mu YJ, Zhu YG. 2011. Effect of pyrene on denitrification activity and abundance and composition of denitrifying community in an agricultural soil. Environ. Poll. 159:1886-1895. http://dx.doi.org/10.1016/j.envpol.2011.03.035.
    • (2011) Environ. Poll , vol.159 , pp. 1886-1895
    • Guo, G.X.1    Deng, H.2    Qiao, M.3    Mu, Y.J.4    Zhu, Y.G.5
  • 17
    • 78751569655 scopus 로고    scopus 로고
    • Pyrene effects on methanotroph community and methane oxidation rate, tested by dose-response experiment and resistance and resilience experiment
    • Deng H, Guo GX, Zhu YG. 2011. Pyrene effects on methanotroph community and methane oxidation rate, tested by dose-response experiment and resistance and resilience experiment. J. Soils Sedim. 11:312-321. http://dx.doi.org/10.1007/s11368-010-0306-3.
    • (2011) J. Soils Sedim , vol.11 , pp. 312-321
    • Deng, H.1    Guo, G.X.2    Zhu, Y.G.3
  • 18
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencingbased assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber CL, Hamady M, Knight R, Fierer N. 2009. Pyrosequencingbased assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl. Environ. Microbiol. 75:5111-5120. http://dx.doi.org/10.1128/AEM.00335-09.
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 19
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer N, Jackson RB. 2006. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U. S. A. 103:626-631. http://dx.doi.org/10.1073/pnas.0507535103.
    • (2006) Proc. Natl. Acad. Sci. U. S. A , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 20
    • 77956749858 scopus 로고    scopus 로고
    • The importance of soil characteristics to the structure of alkane-degrading bacterial communities on sub-Antarctic Macquarie Island
    • Powell SM, Bowman JP, Ferguson SH, Snape I. 2010. The importance of soil characteristics to the structure of alkane-degrading bacterial communities on sub-Antarctic Macquarie Island. Soil Biol. Biochem. 42:2012-2021. http://dx.doi.org/10.1016/j.soilbio.2010.07.027.
    • (2010) Soil Biol. Biochem , vol.42 , pp. 2012-2021
    • Powell, S.M.1    Bowman, J.P.2    Ferguson, S.H.3    Snape, I.4
  • 21
    • 0001283322 scopus 로고
    • Interaction of ammonia monooxygenase from Nitrosomonas europaea with alkanes, alkenes, and alkynes
    • Hyman MR, Murton IB, Arp DJ. 1988. Interaction of ammonia monooxygenase from Nitrosomonas europaea with alkanes, alkenes, and alkynes. Appl. Environ. Microbiol. 54:3187-3190.
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 3187-3190
    • Hyman, M.R.1    Murton, I.B.2    Arp, D.J.3
  • 22
    • 0027328980 scopus 로고
    • Kinetic studies of ammonia moonooxygenase inhibition in Nitrosomonas europaea by hydrocarbons and halogenated hydrocarbons in an optimized whole-cell assay
    • Keener WK, Arp DJ. 1993. Kinetic studies of ammonia moonooxygenase inhibition in Nitrosomonas europaea by hydrocarbons and halogenated hydrocarbons in an optimized whole-cell assay. Appl. Environ. Microbiol. 59:2501-2510.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 2501-2510
    • Keener, W.K.1    Arp, D.J.2
  • 23
    • 80053379323 scopus 로고    scopus 로고
    • Long-term land use effects on soil microbial community structure and function
    • Bissett A, Richardson AE, Baker G, Thrall PH. 2011. Long-term land use effects on soil microbial community structure and function. Appl. Soil Ecol. 51:66-78. http://dx.doi.org/10.1016/j.apsoil.2011.08.010.
    • (2011) Appl. Soil Ecol , vol.51 , pp. 66-78
    • Bissett, A.1    Richardson, A.E.2    Baker, G.3    Thrall, P.H.4
  • 24
    • 46549088589 scopus 로고    scopus 로고
    • Detection of nitrogen cycle genes in soils for measuring the effects of changes in land use and management
    • ColloffMJ, Wakelin SA, Gomez D, Rogers SL. 2008. Detection of nitrogen cycle genes in soils for measuring the effects of changes in land use and management. Soil Biol. Biochem. 40:1637-1645. http://dx.doi.org/10.1016/j.soilbio.2008.01.019.
    • (2008) Soil Biol. Biochem , vol.40 , pp. 1637-1645
    • Colloff, M.J.1    Wakelin, S.A.2    Gomez, D.3    Rogers, S.L.4
  • 25
    • 0038461549 scopus 로고
    • Identification and preliminary assessment of contaminated sites in the Australian Antarctic Territory
    • Hobart, Australia
    • Deprez P, Arens M, Locher H. 1994. Identification and preliminary assessment of contaminated sites in the Australian Antarctic Territory. Australian Antarctic Division, Hobart, Australia.
    • (1994) Australian Antarctic Division
    • Deprez, P.1    Arens, M.2    Locher, H.3
  • 26
    • 33947599959 scopus 로고    scopus 로고
    • Petroleum-hydrocarbon contamination and remediation by microbioventing at sub-Antarctic Macquarie Island
    • Rayner JL, Snape I, Walworth JL, Harvey PM, Ferguson SH. 2007. Petroleum-hydrocarbon contamination and remediation by microbioventing at sub-Antarctic Macquarie Island. Cold Reg. Sci. Technol. 48: 139-153. http://dx.doi.org/10.1016/j.coldregions.2006.11.001.
    • (2007) Cold Reg. Sci. Technol , vol.48 , pp. 139-153
    • Rayner, J.L.1    Snape, I.2    Walworth, J.L.3    Harvey, P.M.4    Ferguson, S.H.5
  • 27
    • 33947577256 scopus 로고    scopus 로고
    • Nitrogen requirements for maximizing petroleum bioremediation in a sub-Antarctic soil
    • Walworth J, Pond A, Snape I, Rayner J, Ferguson S, Harvey P. 2007. Nitrogen requirements for maximizing petroleum bioremediation in a sub-Antarctic soil. Cold Reg. Sci. Technol. 48:84-91. http://dx.doi.org/10.1016/j.coldregions.2006.07.001.
    • (2007) Cold Reg. Sci. Technol , vol.48 , pp. 84-91
    • Walworth, J.1    Pond, A.2    Snape, I.3    Rayner, J.4    Ferguson, S.5    Harvey, P.6
  • 28
    • 84872589989 scopus 로고    scopus 로고
    • Toxicity of diesel contaminated soils to the subantarctic earthworm Microscolex macquarvan iensis
    • Mooney TJ, King CK, Wasley J, Andrew NR. 2013. Toxicity of diesel contaminated soils to the subantarctic earthworm Microscolex macquarvan iensis. Environ. Toxicol. Chem. 32:370-377. http://dx.doi.org/10.1002/etc.2060.
    • (2013) Environ. Toxicol. Chem , vol.32 , pp. 370-377
    • Mooney, T.J.1    King, C.K.2    Wasley, J.3    Andrew, N.R.4
  • 29
    • 34547756264 scopus 로고    scopus 로고
    • Dynamic changes in microbial activity and community structure during biodegradation of petroleum compounds: a laboratory experiment
    • Li H, Zhang Y, Kravchenko I, Xu H, Zhang C-G. 2007. Dynamic changes in microbial activity and community structure during biodegradation of petroleum compounds: a laboratory experiment. J. Environ. Sci. 19:1003-1013. http://dx.doi.org/10.1016/S1001-0742(07)60163-6.
    • (2007) J. Environ. Sci , vol.19 , pp. 1003-1013
    • Li, H.1    Zhang, Y.2    Kravchenko, I.3    Xu, H.4    Zhang, C.-G.5
  • 32
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, GoodfellowM(ed). John Wiley & Sons, Chichester, United Kingdom.
    • Lane DJ. 1991. 16S/23S rRNA sequencing, p 115-175. In Stackebrandt E, GoodfellowM(ed), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-175
    • Lane, D.J.1
  • 33
    • 49949095159 scopus 로고    scopus 로고
    • Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonellainfected pigs
    • Dowd SE, Sun Y, Wolcott RD, Domingo A, Carroll JA. 2008. Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonellainfected pigs. Foodborne Pathog. Dis. 5:459-472. http://dx.doi.org/10.1089/fpd.2008.0107.
    • (2008) Foodborne Pathog. Dis , vol.5 , pp. 459-472
    • Dowd, S.E.1    Sun, Y.2    Wolcott, R.D.3    Domingo, A.4    Carroll, J.A.5
  • 35
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196. http://dx.doi.org/10.1093/nar/gkm864.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 36
    • 79961181125 scopus 로고    scopus 로고
    • UCHIME improves sensitivity and speed of chimera detection
    • Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200. http://dx.doi.org/10.1093/bioinformatics/btr381.
    • (2011) Bioinformatics , vol.27 , pp. 2194-2200
    • Edgar, R.C.1    Haas, B.J.2    Clemente, J.C.3    Quince, C.4    Knight, R.5
  • 37
    • 78650214082 scopus 로고    scopus 로고
    • Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes
    • Kim M, Morrison M, Yu Z. 2011. Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes. J. Microbiol. Meth. 84:81-87. http://dx.doi.org/10.1016/j.mimet.2010.10.020.
    • (2011) J. Microbiol. Meth , vol.84 , pp. 81-87
    • Kim, M.1    Morrison, M.2    Yu, Z.3
  • 38
    • 33846185425 scopus 로고    scopus 로고
    • Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils
    • Labbé D, Margesin R, Schinner F, Whyte LG, Greer CW. 2007. Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils. FEMS Microbiol. Ecol. 59:466-475. http://dx.doi.org/10.1111/j.1574-6941.2006.00250.x.
    • (2007) FEMS Microbiol. Ecol , vol.59 , pp. 466-475
    • Labbé, D.1    Margesin, R.2    Schinner, F.3    Whyte, L.G.4    Greer, C.W.5
  • 39
    • 33750983947 scopus 로고    scopus 로고
    • Clearcut: a fast implementation of relaxed neighbor joining
    • Sheneman L, Evans J, Foster JA. 2006. Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 22:2823-2824. http://dx.doi.org/10.1093/bioinformatics/btl478.
    • (2006) Bioinformatics , vol.22 , pp. 2823-2824
    • Sheneman, L.1    Evans, J.2    Foster, J.A.3
  • 40
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R. 2006. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7:371. http://dx.doi.org/10.1186/1471-2105-7-371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 41
    • 68649117773 scopus 로고    scopus 로고
    • Changes in marine communities: an approach to statistical analysis and interpretation
    • United Kingdom
    • Clarke KR, Warwick RM. 2001. Changes in marine communities: an approach to statistical analysis and interpretation. PRIMER-E, Plymouth, United Kingdom.
    • (2001) PRIMER-E, Plymouth
    • Clarke, K.R.1    Warwick, R.M.2
  • 42
    • 41449108290 scopus 로고    scopus 로고
    • Relationship between nitrifier and denitrifier community composition and abundance in predicting nitrous oxide emissions from ephemeral wetland soils
    • Ma WK, Bedard-Haughn A, Siciliano SD, Farrell RE. 2008. Relationship between nitrifier and denitrifier community composition and abundance in predicting nitrous oxide emissions from ephemeral wetland soils. Soil Biol. Biochem. 40:1114-1123. http://dx.doi.org/10.1016/j.soilbio.2007.12.004.
    • (2008) Soil Biol. Biochem , vol.40 , pp. 1114-1123
    • Ma, W.K.1    Bedard-Haughn, A.2    Siciliano, S.D.3    Farrell, R.E.4
  • 43
    • 84864691243 scopus 로고    scopus 로고
    • A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase
    • Gaby JC, Buckley DH. 2012. A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase. PLoS One 7:e42149. http://dx.doi.org/10.1371/journal.pone.0042149.
    • (2012) PLoS One , vol.7
    • Gaby, J.C.1    Buckley, D.H.2
  • 44
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe JH, Witzel KP, Liesack W. 1997. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63:4704-4712.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 45
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. 2005. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U. S. A. 102:14683-14688. http://dx.doi.org/10.1073/pnas.0506625102.
    • (2005) Proc. Natl. Acad. Sci. U. S. A , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 46
    • 33747335398 scopus 로고    scopus 로고
    • Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
    • Henry S, Bru D, Stres B, Hallet S, Philippot L. 2006. Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl. Environ. Microbiol. 72:5181-5189. http://dx.doi.org/10.1128/AEM.00231-06.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5181-5189
    • Henry, S.1    Bru, D.2    Stres, B.3    Hallet, S.4    Philippot, L.5
  • 47
    • 34547801625 scopus 로고    scopus 로고
    • Evaluation of quantitative polymerase chain reaction to assess nosZ gene prevalence in mixed microbial communities
    • Siciliano SD, Ma W, Powell S. 2007. Evaluation of quantitative polymerase chain reaction to assess nosZ gene prevalence in mixed microbial communities. Can. J. Microbiol. 53:636-642. http://dx.doi.org/10.1139/W07-014.
    • (2007) Can. J. Microbiol , vol.53 , pp. 636-642
    • Siciliano, S.D.1    Ma, W.2    Powell, S.3
  • 48
    • 84885080764 scopus 로고    scopus 로고
    • Response of the abundance of key soil microbial nitrogencycling genes to multi-factorial global changes
    • Zhang X, Liu W, Schloter M, Zhang G, Chen Q, Huang J, Li L, Elser JJ, Han X. 2013. Response of the abundance of key soil microbial nitrogencycling genes to multi-factorial global changes. PLoS One 8(10):e76500. http://dx.doi.org/10.1371/journal.pone.0076500.
    • (2013) PLoS One , vol.8 , Issue.10
    • Zhang, X.1    Liu, W.2    Schloter, M.3    Zhang, G.4    Chen, Q.5    Huang, J.6    Li, L.7    Elser, J.J.8    Han, X.9
  • 49
    • 16844366355 scopus 로고    scopus 로고
    • Knowing when to draw the line: designing more informative ecological experiments
    • Cottingham KL, Lennon JT, Brown BL. 2005. Knowing when to draw the line: designing more informative ecological experiments. Front. Ecol. Environ.3:145-152.http://dx.doi.org/10.1890/1540-9295(2005)003[0145 :KWTDTL]2.0.CO;2.
    • (2005) Front. Ecol. Environ , vol.3 , pp. 145-152
    • Cottingham, K.L.1    Lennon, J.T.2    Brown, B.L.3
  • 50
    • 36549089082 scopus 로고    scopus 로고
    • Utilizing R software package for dose-response studies: the concept and data analysis
    • Knezevic SZ, Streibig JC, Ritz C. 2007. Utilizing R software package for dose-response studies: the concept and data analysis. Weed Technol. 21: 840-848. http://dx.doi.org/10.1614/WT-06-161.1.
    • (2007) Weed Technol , vol.21 , pp. 840-848
    • Knezevic, S.Z.1    Streibig, J.C.2    Ritz, C.3
  • 51
    • 13444309267 scopus 로고    scopus 로고
    • Bioassay analysis using R
    • Ritz C, Streibig JC. 2005. Bioassay analysis using R. J. Stat. Software 12:1-22. http://www.jstatsoft.org/v12/i05/paper.
    • (2005) J. Stat. Software , vol.12 , pp. 1-22
    • Ritz, C.1    Streibig, J.C.2
  • 52
    • 0029667536 scopus 로고    scopus 로고
    • Productivity and sustainability influenced by biodiversity in grassland ecosystems
    • Tilman D, Wedin D, Knops J. 1996. Productivity and sustainability influenced by biodiversity in grassland ecosystems. Nature 379:718-720. http://dx.doi.org/10.1038/379718a0.
    • (1996) Nature , vol.379 , pp. 718-720
    • Tilman, D.1    Wedin, D.2    Knops, J.3
  • 53
    • 0033574013 scopus 로고    scopus 로고
    • Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis
    • Yachi S, Loreau M. 1999. Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. Proc. Natl. Acad. Sci. U. S. A. 96:1463-1468. http://dx.doi.org/10.1073/pnas.96.4.1463.
    • (1999) Proc. Natl. Acad. Sci. U. S. A , vol.96 , pp. 1463-1468
    • Yachi, S.1    Loreau, M.2
  • 54
    • 50049126125 scopus 로고    scopus 로고
    • Resistance, resilience, and redundancy in microbial communities
    • Allison SD, Martiny JBH. 2008. Resistance, resilience, and redundancy in microbial communities. Proc. Natl. Acad. Sci. U. S. A. 105:11512-11519. http://dx.doi.org/10.1073/pnas.0801925105.
    • (2008) Proc. Natl. Acad. Sci. U. S. A , vol.105 , pp. 11512-11519
    • Allison, S.D.1    Martiny, J.B.H.2
  • 56
    • 2942566096 scopus 로고    scopus 로고
    • Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology
    • Curtis TP, Sloan WT. 2004. Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Curr. Opin. Microbiol. 7:221-226. http://dx.doi.org/10.1016/j.mib.2004.04.010.
    • (2004) Curr. Opin. Microbiol , vol.7 , pp. 221-226
    • Curtis, T.P.1    Sloan, W.T.2
  • 57
    • 46749150088 scopus 로고    scopus 로고
    • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
    • Bent SJ, Forney LJ. 2008. The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. ISME J. 2:689-695. http://dx.doi.org/10.1038/ismej.2008.44.
    • (2008) ISME J , vol.2 , pp. 689-695
    • Bent, S.J.1    Forney, L.J.2
  • 58
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • Fierer N, Bradford MA, Jackson RB. 2007. Toward an ecological classification of soil bacteria. Ecology 88:1354-1364. http://dx.doi.org/10.1890/05-1839.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 59
    • 33845350123 scopus 로고    scopus 로고
    • Isolation of denitrifying bacteria from hydrocarbon-contaminated Antarctic soil
    • Powell SM, Ma WK, Siciliano SD. 2006. Isolation of denitrifying bacteria from hydrocarbon-contaminated Antarctic soil. Polar Biol. 30:69-74. http://dx.doi.org/10.1007/s00300-006-0161-2.
    • (2006) Polar Biol , vol.30 , pp. 69-74
    • Powell, S.M.1    Ma, W.K.2    Siciliano, S.D.3
  • 60
    • 61449162196 scopus 로고    scopus 로고
    • Occurrence and diversity of naphthalene dioxygenase genes in soil microbial communities from the maritime Antarctic
    • Flocco CG, Gomes NCM, Mac Cormack W, Smalla K. 2009. Occurrence and diversity of naphthalene dioxygenase genes in soil microbial communities from the maritime Antarctic. Environ. Microbiol. 11:700-714. http://dx.doi.org/10.1111/j.1462-2920.2008.01858.x.
    • (2009) Environ. Microbiol , vol.11 , pp. 700-714
    • Flocco, C.G.1    Gomes, N.C.M.2    Mac Cormack, W.3    Smalla, K.4
  • 61
    • 0035992447 scopus 로고    scopus 로고
    • Soil microbial toxicity of eight polycyclic aromatic compounds: effects on nitrification, the genetic diversity of bacteria, and the total number of protozoans
    • Sverdrup LE, Ekelund F, Krogh PH, Nielsen T, Johnsen K. 2002. Soil microbial toxicity of eight polycyclic aromatic compounds: effects on nitrification, the genetic diversity of bacteria, and the total number of protozoans. Environ. Toxicol. Chem. 21:1644-1650. http://dx.doi.org/10.1002/etc.5620210815.
    • (2002) Environ. Toxicol. Chem , vol.21 , pp. 1644-1650
    • Sverdrup, L.E.1    Ekelund, F.2    Krogh, P.H.3    Nielsen, T.4    Johnsen, K.5
  • 62
    • 33745502385 scopus 로고    scopus 로고
    • Microbial indicators in mine soils (S Domingos mine, Portugal)
    • Pereira R, Sousa J, Ribeiro R, Gonçalves F. 2006. Microbial indicators in mine soils (S. Domingos mine, Portugal). Soil Sedim. Contam. 15:147-167. http://dx.doi.org/10.1080/15320380500506813.
    • (2006) Soil Sedim. Contam , vol.15 , pp. 147-167
    • Pereira, R.1    Sousa, J.2    Ribeiro, R.3    Gonçalves, F.4
  • 63
    • 0030937059 scopus 로고    scopus 로고
    • Effect of application solvents on heterotrophic and nitrifying populations in soil microcosms
    • Miller JL, Sardo MA, Thompson TL, Miller RM. 1997. Effect of application solvents on heterotrophic and nitrifying populations in soil microcosms. Environ. Toxicol. Chem. 16:447-451. http://dx.doi.org/10.1002/etc.5620160309.
    • (1997) Environ. Toxicol. Chem , vol.16 , pp. 447-451
    • Miller, J.L.1    Sardo, M.A.2    Thompson, T.L.3    Miller, R.M.4
  • 64
    • 0036965906 scopus 로고    scopus 로고
    • Cooxidation of napthalene and other polycyclic aromatic hydrocarbons by the nitrifying bacterium, Nitrosomonas europaea
    • Chang SW, Hyman MR, Williamson KJ. 2002. Cooxidation of napthalene and other polycyclic aromatic hydrocarbons by the nitrifying bacterium, Nitrosomonas europaea. Biodegradation 13:373-381. http://dx.doi.org/10.1023/A:1022811430030.
    • (2002) Biodegradation , vol.13 , pp. 373-381
    • Chang, S.W.1    Hyman, M.R.2    Williamson, K.J.3
  • 65
    • 9644273987 scopus 로고    scopus 로고
    • Influence of long-term diesel fuel pollution on nitrite-oxidising activity and population size of nitrobacter spp. in soil
    • Deni J, Penninckx MJ. 2004. Influence of long-term diesel fuel pollution on nitrite-oxidising activity and population size of nitrobacter spp. in soil. Microbiol. Res. 159:323-329. http://dx.doi.org/10.1016/j.micres.2004.06.004.
    • (2004) Microbiol. Res , vol.159 , pp. 323-329
    • Deni, J.1    Penninckx, M.J.2

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