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Volumn 34, Issue 17, 2016, Pages 2035-2043

Development of a candidate reference material for adventitious virus detection in vaccine and biologicals manufacturing by deep sequencing

(58)  Mee, Edward T a   Preston, Mark D a   Minor, Philip D a   Schepelmann, Silke a   Huang, Xuening b   Nguyen, Jenny b   Wall, David b   Hargrove, Stacey b   Fu, Thomas b   Xu, George b   Li, Li b   Cote, Colette c   Delwart, Eric d,e   Li, Linlin d,e   Hewlett, Indira f   Simonyan, Vahan f   Ragupathy, Viswanath f   Voskanian Kordi, Alin f   Mermod, Nicolas g   Hill, Christiane h   more..


Author keywords

Adventitious virus; Collaborative study; Deep sequencing; Reference material; Vaccine

Indexed keywords

BIOLOGICAL PRODUCT; REAGENT; REFERENCE MATERIAL; UNCLASSIFIED DRUG; VIRUS VACCINE; VACCINE;

EID: 84960968448     PISSN: 0264410X     EISSN: 18732518     Source Type: Journal    
DOI: 10.1016/j.vaccine.2015.12.020     Document Type: Article
Times cited : (32)

References (35)
  • 1
    • 77952692589 scopus 로고    scopus 로고
    • Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus
    • JVI.02690-09
    • Victoria J.G., Wang C., Jones M.S., Jaing C., McLoughlin K., Gardner S., et al. Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus. J Virol 2010, 84(Jun (12)):6033-6040. pii:JVI.02690-09. 10.1128/JVI. 02690-09.
    • (2010) J Virol , vol.84 , Issue.JUN 12 , pp. 6033-6040
    • Victoria, J.G.1    Wang, C.2    Jones, M.S.3    Jaing, C.4    McLoughlin, K.5    Gardner, S.6
  • 2
    • 28544444596 scopus 로고    scopus 로고
    • Some oral poliovirus vaccines were contaminated with infectious SV40 after 1961
    • 65/22/10273
    • Cutrone R., Lednicky J., Dunn G., Rizzo P., Bocchetta M., Chumakov K., et al. Some oral poliovirus vaccines were contaminated with infectious SV40 after 1961. Cancer Res 2005, 65(Nov (22)):10273-10279. pii:65/22/10273. 10.1158/0008-5472.CAN-05-2028.
    • (2005) Cancer Res , vol.65 , Issue.NOV 22 , pp. 10273-10279
    • Cutrone, R.1    Lednicky, J.2    Dunn, G.3    Rizzo, P.4    Bocchetta, M.5    Chumakov, K.6
  • 3
    • 84899967641 scopus 로고    scopus 로고
    • Systematic evaluation of in vitro and in vivo adventitious virus assays for the detection of viral contamination of cell banks and biological products
    • Gombold J., Karakasidis S., Niksa P., Podczasy J., Neumann K., Richardson J., et al. Systematic evaluation of in vitro and in vivo adventitious virus assays for the detection of viral contamination of cell banks and biological products. Vaccine 2014, 32(May (24)):2916-2926. pii:S0264-410X(14)00194-7. 10.1016/j.vaccine.2014.02.021.
    • (2014) Vaccine , vol.32 , Issue.MAY 24 , pp. 2916-2926
    • Gombold, J.1    Karakasidis, S.2    Niksa, P.3    Podczasy, J.4    Neumann, K.5    Richardson, J.6
  • 4
    • 84887431948 scopus 로고    scopus 로고
    • Investigation of a regulatory agency enquiry into potential porcine circovirus type 1 contamination of the human rotavirus vaccine. Rotarix: approach and outcome
    • 25973
    • Dubin G., Toussaint J.F., Cassart J.P., Howe B., Boyce D., Friedland L., et al. Investigation of a regulatory agency enquiry into potential porcine circovirus type 1 contamination of the human rotavirus vaccine. Rotarix: approach and outcome. Hum Vaccin Immunother 2013, 9(Nov (11)):2398-2408. pii:25973.
    • (2013) Hum Vaccin Immunother , vol.9 , Issue.NOV 11 , pp. 2398-2408
    • Dubin, G.1    Toussaint, J.F.2    Cassart, J.P.3    Howe, B.4    Boyce, D.5    Friedland, L.6
  • 5
    • 84863785381 scopus 로고    scopus 로고
    • Investigation of porcine circovirus contamination in human vaccines
    • Gilliland S.M., Forrest L., Carre H., Jenkins A., Berry N., Martin J., et al. Investigation of porcine circovirus contamination in human vaccines. Biologicals 2012, 40(Jul (4)):270-277. pii:S1045-1056(12)00026-7. 10.1016/j.biologicals.2012.02.002.
    • (2012) Biologicals , vol.40 , Issue.JUL 4 , pp. 270-277
    • Gilliland, S.M.1    Forrest, L.2    Carre, H.3    Jenkins, A.4    Berry, N.5    Martin, J.6
  • 6
    • 80052457069 scopus 로고    scopus 로고
    • Ensuring the safety of vaccine cell substrates by massively parallel sequencing of the transcriptome
    • Onions D., Cote C., Love B., Toms B., Koduri S., Armstrong A., et al. Ensuring the safety of vaccine cell substrates by massively parallel sequencing of the transcriptome. Vaccine 2011, 29(Sep (41)):7117-7121. pii:S0264-410X(11)00818-8. 10.1016/j.vaccine.2011.05.071.
    • (2011) Vaccine , vol.29 , pp. 7117-7121
    • Onions, D.1    Cote, C.2    Love, B.3    Toms, B.4    Koduri, S.5    Armstrong, A.6
  • 7
    • 84915749940 scopus 로고    scopus 로고
    • Evaluation of cells and biological reagents for adventitious agents using degenerate primer PCR and massively parallel sequencing
    • McClenahan S.D., Uhlenhaut C., Krause P.R. Evaluation of cells and biological reagents for adventitious agents using degenerate primer PCR and massively parallel sequencing. Vaccine 2014, 32(Dec (52)):7115-7121. pii:S0264-410X(14)01385-1. 10.1016/j.vaccine.2014.10.022.
    • (2014) Vaccine , vol.32 , Issue.DEC 52 , pp. 7115-7121
    • McClenahan, S.D.1    Uhlenhaut, C.2    Krause, P.R.3
  • 8
    • 77952953556 scopus 로고    scopus 로고
    • Massively parallel sequencing, a new method for detecting adventitious agents
    • Onions D., Kolman J. Massively parallel sequencing, a new method for detecting adventitious agents. Biologicals 2010, 38(May (3)):377-380. pii:S1045-1056(10)00004-7. 10.1016/j.biologicals.2010.01.003.
    • (2010) Biologicals , vol.38 , Issue.MAY 3 , pp. 377-380
    • Onions, D.1    Kolman, J.2
  • 9
    • 84901009849 scopus 로고    scopus 로고
    • Unbiased analysis by high throughput sequencing of the viral diversity in fetal bovine serum and trypsin used in cell culture
    • Gagnieur L., Cheval J., Gratigny M., Hebert C., Muth E., Dumarest M., et al. Unbiased analysis by high throughput sequencing of the viral diversity in fetal bovine serum and trypsin used in cell culture. Biologicals 2014, 42(May (3)):145-152. pii:S1045-1056(14)00006-2. 10.1016/j.biologicals.2014.02.002.
    • (2014) Biologicals , vol.42 , Issue.MAY 3 , pp. 145-152
    • Gagnieur, L.1    Cheval, J.2    Gratigny, M.3    Hebert, C.4    Muth, E.5    Dumarest, M.6
  • 10
    • 84915757071 scopus 로고    scopus 로고
    • Detection of adventitious agents using next-generation sequencing
    • 68/6/651
    • Richards B., Cao S., Plavsic M., Pomponio R., Davies C., Mattaliano R., et al. Detection of adventitious agents using next-generation sequencing. PDA J Pharm Sci Technol 2014, 68(Nov (6)):651-660. pii:68/6/651. 10.5731/pdajpst.2014.01025.
    • (2014) PDA J Pharm Sci Technol , vol.68 , Issue.NOV 6 , pp. 651-660
    • Richards, B.1    Cao, S.2    Plavsic, M.3    Pomponio, R.4    Davies, C.5    Mattaliano, R.6
  • 11
    • 84909959975 scopus 로고    scopus 로고
    • A new approach to determining whole viral genomic sequences including termini using a single deep sequencing run
    • Alfson K.J., Beadles M.W., Griffiths A. A new approach to determining whole viral genomic sequences including termini using a single deep sequencing run. J Virol Methods 2014, 208:1-5. pii:S0166-0934(14)00295-X. 10.1016/j.jviromet.2014.07.023.
    • (2014) J Virol Methods , vol.208 , pp. 1-5
    • Alfson, K.J.1    Beadles, M.W.2    Griffiths, A.3
  • 12
    • 84898893459 scopus 로고    scopus 로고
    • Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm
    • PONE-D-13-49127
    • Cotten M., Oude M.B., Canuti M., Deijs M., Watson S.J., Kellam P., et al. Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm. PLOS ONE 2014, 9(4):e93269. pii:PONE-D-13-49127. 10.1371/journal.pone.0093269.
    • (2014) PLOS ONE , vol.9 , Issue.4 , pp. e93269
    • Cotten, M.1    Oude, M.B.2    Canuti, M.3    Deijs, M.4    Watson, S.J.5    Kellam, P.6
  • 13
    • 84887344451 scopus 로고    scopus 로고
    • Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery
    • Hall R.J., Wang J., Todd A.K., Bissielo A.B., Yen S., Strydom H., et al. Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery. J Virol Methods 2014, 195:194-204. pii:S0166-0934(13)00382-0. 10.1016/j.jviromet.2013.08.035.
    • (2014) J Virol Methods , vol.195 , pp. 194-204
    • Hall, R.J.1    Wang, J.2    Todd, A.K.3    Bissielo, A.B.4    Yen, S.5    Strydom, H.6
  • 14
    • 84919825539 scopus 로고    scopus 로고
    • Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent
    • Li L., Deng X., Mee E.T., Collot-Teixeira S., Anderson R., Schepelmann S., et al. Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent. J Virol Methods 2015, 213:139-146. pii:S0166-0934(14)00461-3. 10.1016/j.jviromet.2014.12.002.
    • (2015) J Virol Methods , vol.213 , pp. 139-146
    • Li, L.1    Deng, X.2    Mee, E.T.3    Collot-Teixeira, S.4    Anderson, R.5    Schepelmann, S.6
  • 15
    • 84965188271 scopus 로고    scopus 로고
    • Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
    • Matranga C.B., Andersen K.G., Winnicki S., Busby M., Gladden A.D., Tewhey R., et al. Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples. Genome Biol 2014, 15(11):519. pii:s13059-014-0519-7. 10.1186/PREACCEPT-1698056557139770.
    • (2014) Genome Biol , vol.15 , Issue.11 , pp. 519
    • Matranga, C.B.1    Andersen, K.G.2    Winnicki, S.3    Busby, M.4    Gladden, A.D.5    Tewhey, R.6
  • 16
    • 84891735398 scopus 로고    scopus 로고
    • Optimization of virus detection in cells using massively parallel sequencing
    • McClenahan S.D., Uhlenhaut C., Krause P.R. Optimization of virus detection in cells using massively parallel sequencing. Biologicals 2014, 42(Jan (1)):34-41. pii:S1045-1056(13)00134-6. 10.1016/j.biologicals.2013.11.002.
    • (2014) Biologicals , vol.42 , Issue.JAN 1 , pp. 34-41
    • McClenahan, S.D.1    Uhlenhaut, C.2    Krause, P.R.3
  • 17
    • 84919468823 scopus 로고    scopus 로고
    • Metagenomic analysis of viruses in feces from unsolved outbreaks of gastroenteritis in humans
    • JCM. 02029-14
    • Moore N.E., Wang J., Hewitt J., Croucher D., Williamson D.A., Paine S., et al. Metagenomic analysis of viruses in feces from unsolved outbreaks of gastroenteritis in humans. J Clin Microbiol 2015, 53(Jan (1)):15-21. pii:JCM. 02029-14. 10.1128/JCM. 02029-14.
    • (2015) J Clin Microbiol , vol.53 , Issue.JAN 1 , pp. 15-21
    • Moore, N.E.1    Wang, J.2    Hewitt, J.3    Croucher, D.4    Williamson, D.A.5    Paine, S.6
  • 19
    • 79960647785 scopus 로고    scopus 로고
    • Molecular and infectivity studies of porcine circovirus in vaccines
    • McClenahan S.D., Krause P.R., Uhlenhaut C. Molecular and infectivity studies of porcine circovirus in vaccines. Vaccine 2011, 29(Jun (29-30)):4745-4753. pii:S0264-410X(11)00642-6. 10.1016/j.vaccine.04.087.
    • (2011) Vaccine , vol.29 , Issue.JUN 29 30 , pp. 4745-4753
    • McClenahan, S.D.1    Krause, P.R.2    Uhlenhaut, C.3
  • 20
    • 84886301115 scopus 로고    scopus 로고
    • The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns
    • JVI.02323-13
    • Naccache S.N., Greninger A.L., Lee D., Coffey L.L., Phan T., Rein-Weston A., et al. The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. J Virol 2013, 87(Nov (22)):11966-11977. pii:JVI.02323-13. 10.1128/JVI. 02323-13.
    • (2013) J Virol , vol.87 , Issue.NOV 22 , pp. 11966-11977
    • Naccache, S.N.1    Greninger, A.L.2    Lee, D.3    Coffey, L.L.4    Phan, T.5    Rein-Weston, A.6
  • 21
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter S.J., Cox M.J., Turek E.M., Calus S.T., Cookson W.O., Moffatt M.F., et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol 2014, 12:87. pii:s12915-014-0087-z. 10.1186/s12915-014-0087-z.
    • (2014) BMC Biol , vol.12 , pp. 87
    • Salter, S.J.1    Cox, M.J.2    Turek, E.M.3    Calus, S.T.4    Cookson, W.O.5    Moffatt, M.F.6
  • 22
    • 84899531657 scopus 로고    scopus 로고
    • Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys
    • PONE-D-13-49866
    • Nelson M.C., Morrison H.G., Benjamino J., Grim S.L., Graf J. Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys. PLOS ONE 2014, 9(4):e94249. pii:PONE-D-13-49866. 10.1371/journal.pone.0094249.
    • (2014) PLOS ONE , vol.9 , Issue.4 , pp. e94249
    • Nelson, M.C.1    Morrison, H.G.2    Benjamino, J.3    Grim, S.L.4    Graf, J.5
  • 23
    • 84915771169 scopus 로고    scopus 로고
    • Preliminary evaluation of next-generation sequencing performance relative to qPCR and in vitro cell culture tests for human cytomegalovirus
    • 68/6/563
    • Ng S.H., Azizi A., Edamura K., Malott R.J., Charlebois R.L., Logvinoff C., et al. Preliminary evaluation of next-generation sequencing performance relative to qPCR and in vitro cell culture tests for human cytomegalovirus. PDA J Pharm Sci Technol 2014, 68(Nov (6)):563-571. pii:68/6/563. 10.5731/pdajpst.2014.01013.
    • (2014) PDA J Pharm Sci Technol , vol.68 , Issue.NOV 6 , pp. 563-571
    • Ng, S.H.1    Azizi, A.2    Edamura, K.3    Malott, R.J.4    Charlebois, R.L.5    Logvinoff, C.6
  • 24
    • 84904255806 scopus 로고    scopus 로고
    • A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
    • gr.171934.113
    • Naccache S.N., Federman S., Veeraraghavan N., Zaharia M., Lee D., Samayoa E., et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Res 2014, 24(Jul (7)):1180-1192. pii:gr.171934.113. 10.1101/gr.171934.113.
    • (2014) Genome Res , vol.24 , Issue.JUL 7 , pp. 1180-1192
    • Naccache, S.N.1    Federman, S.2    Veeraraghavan, N.3    Zaharia, M.4    Lee, D.5    Samayoa, E.6
  • 25
  • 26
    • 84899090573 scopus 로고    scopus 로고
    • Kraken: ultrafast metagenomic sequence classification using exact alignments
    • gb-2014-15-3-r46
    • Wood D.E., Salzberg S.L. Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biol 2014, 15(3):R46. pii:gb-2014-15-3-r46. 10.1186/gb-2014-15-3-r46.
    • (2014) Genome Biol , vol.15 , Issue.3 , pp. R46
    • Wood, D.E.1    Salzberg, S.L.2
  • 27
    • 84864440400 scopus 로고    scopus 로고
    • Metagenomic microbial community profiling using unique clade-specific marker genes
    • nmeth.2066
    • Segata N., Waldron L., Ballarini A., Narasimhan V., Jousson O., Huttenhower C. Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods 2012, 9(Aug (8)):811-814. pii:nmeth.2066. 10.1038/nmeth.2066.
    • (2012) Nat Methods , vol.9 , Issue.AUG 8 , pp. 811-814
    • Segata, N.1    Waldron, L.2    Ballarini, A.3    Narasimhan, V.4    Jousson, O.5    Huttenhower, C.6
  • 28
    • 84941073363 scopus 로고    scopus 로고
    • NCBI viral genomes resource
    • D571-D577.gku1207
    • Brister J.R., Ako-Adjei D., Bao Y., Blinkova O. NCBI viral genomes resource. Nucleic Acids Res 2015, 43(Jan (Database issue)). pii:D571-D577.gku1207. 10.1093/nar/gku1207.
    • (2015) Nucleic Acids Res , vol.43 , Issue.JAN DATABASE ISSUE
    • Brister, J.R.1    Ako-Adjei, D.2    Bao, Y.3    Blinkova, O.4
  • 29
    • 84963959463 scopus 로고
    • An infectious ribonucleic acid derived from influenza-infected cells
    • Maassab H.F. An infectious ribonucleic acid derived from influenza-infected cells. Proc Natl Acad Sci U S A 1959, 45(Jun (6)):877-881.
    • (1959) Proc Natl Acad Sci U S A , vol.45 , Issue.JUN 6 , pp. 877-881
    • Maassab, H.F.1
  • 30
    • 84913977403 scopus 로고
    • Infectivity of ribonucleic acid from poliovirus in human cell monolayers
    • Alexander H.E., Koch G., Mountain I.M., Van D.O. Infectivity of ribonucleic acid from poliovirus in human cell monolayers. J Exp Med 1958, 108(Oct (4)):493-506.
    • (1958) J Exp Med , vol.108 , Issue.OCT 4 , pp. 493-506
    • Alexander, H.E.1    Koch, G.2    Mountain, I.M.3    Van, D.O.4
  • 31
    • 7044230198 scopus 로고
    • Infectivity of ribonucleic acid of poliovirus on HeLa cell mono-layers
    • 0042-6822(58)90014-X
    • Alexander H.E., Koch G., Mountain I.M., Sprunt K., Van D.O. Infectivity of ribonucleic acid of poliovirus on HeLa cell mono-layers. Virology 1958, 5(Feb (1)):172-173. pii:0042-6822(58)90014-X.
    • (1958) Virology , vol.5 , Issue.FEB 1 , pp. 172-173
    • Alexander, H.E.1    Koch, G.2    Mountain, I.M.3    Sprunt, K.4    Van, D.O.5
  • 32
    • 80052221189 scopus 로고    scopus 로고
    • Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples
    • JCM. 00850-11
    • Cheval J., Sauvage V., Frangeul L., Dacheux L., Guigon G., Dumey N., et al. Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples. J Clin Microbiol 2011, 49(Sep (9)):3268-3275. pii:JCM. 00850-11. 10.1128/JCM. 00850-11.
    • (2011) J Clin Microbiol , vol.49 , pp. 3268-3275
    • Cheval, J.1    Sauvage, V.2    Frangeul, L.3    Dacheux, L.4    Guigon, G.5    Dumey, N.6
  • 33
    • 84915825824 scopus 로고    scopus 로고
    • Defining a sample preparation workflow for advanced virus detection and understanding sensitivity by next-generation sequencing
    • 68/6/579
    • Wang C.J., Feng S.F., Duncan P. Defining a sample preparation workflow for advanced virus detection and understanding sensitivity by next-generation sequencing. PDA J Pharm Sci Technol 2014, 68(Nov (6)):579-588. pii:68/6/579. 10.5731/pdajpst.2014.01010.
    • (2014) PDA J Pharm Sci Technol , vol.68 , Issue.NOV 6 , pp. 579-588
    • Wang, C.J.1    Feng, S.F.2    Duncan, P.3
  • 34
    • 84893206783 scopus 로고    scopus 로고
    • Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
    • 1471-2164-15-96
    • Frey K.G., Herrera-Galeano J.E., Redden C.L., Luu T.V., Servetas S.L., Mateczun A.J., et al. Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood. BMC Genomics 2014, 15:96. pii:1471-2164-15-96. 10.1186/1471-2164-15-96.
    • (2014) BMC Genomics , vol.15 , pp. 96
    • Frey, K.G.1    Herrera-Galeano, J.E.2    Redden, C.L.3    Luu, T.V.4    Servetas, S.L.5    Mateczun, A.J.6
  • 35
    • 79955930966 scopus 로고    scopus 로고
    • The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue
    • PONE-D-10-06050
    • Moore R.A., Warren R.L., Freeman J.D., Gustavsen J.A., Chenard C., Friedman J.M., et al. The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue. PLoS One 2011, 6(5):e19838. pii:PONE-D-10-06050. 10.1371/journal.pone.0019838.
    • (2011) PLoS One , vol.6 , Issue.5 , pp. e19838
    • Moore, R.A.1    Warren, R.L.2    Freeman, J.D.3    Gustavsen, J.A.4    Chenard, C.5    Friedman, J.M.6


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