Identification of suitable reference genes in the mouse placenta

Placenta

Volumn 39, Issue , 2016, Pages 7-15

  Solano, María Emilia ^a   Thiele, Kristin ^a   Kowal, Mirka Katharina ^a   Arck, Petra Clara ^a  

^a UNIVERSITY MEDICAL CENTER HAMBURG EPPENDORF   (Germany)

Author keywords

Endogenous control; Mouse placenta; Quantitative real time reverse transcription polymerase chain reaction; Reference gene

Indexed keywords

BETA 2 MICROGLOBULIN; BETA ACTIN; BETA GLUCURONIDASE; COMPLEMENTARY DNA; CYCLIN DEPENDENT KINASE INHIBITOR 1A; CYCLIN DEPENDENT KINASE INHIBITOR 1B; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; KARYOPHERIN; PHOSPHOGLYCERATE KINASE; RIBOSOME PROTEIN; RNA 18S; RNA POLYMERASE II; TATA BINDING PROTEIN; TYROSINE 3 MONOOXYGENASE; UBIQUITIN C; GENETIC MARKER; MESSENGER RNA; TUMOR ANTIGEN; UBC ANTIGEN;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION; GENETIC STABILITY; HOUSEKEEPING GENE; MOUSE; NONHUMAN; PLACENTA; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ANIMAL; BAGG ALBINO MOUSE; C57BL MOUSE; CHEMISTRY; ESSENTIAL GENE; GENE EXPRESSION PROFILING; GENETIC MARKER; GENETICS; METABOLISM; PREGNANCY; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; STANDARD; STANDARDS;

ANIMALS; ANTIGENS, NEOPLASM; FEMALE; GENE EXPRESSION PROFILING; GENES, ESSENTIAL; GENETIC MARKERS; MICE; MICE, INBRED BALB C; MICE, INBRED C57BL; PLACENTA; PREGNANCY; REAL-TIME POLYMERASE CHAIN REACTION; REFERENCE STANDARDS; RNA POLYMERASE II; RNA, MESSENGER;

EID: 84960960769     PISSN: 01434004     EISSN: 15323102     Source Type: Journal    
DOI: 10.1016/j.placenta.2015.12.017     Document Type: Article

References (38)

1. C. Walker, S. Meier, M. Mitchell, J. Roche, and M. Littlejohn Evaluation of real-time PCR endogenous control genes for analysis of gene expression in bovine endometrium BMC Mol. Biol. 10 2009 100
2. J. Vandesompele, K. De Preter, F. Pattyn, B. Poppe, N. Van Roy, A. De Paepe, and et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol. 3 2002 research0034.1-research0034.11
3. M. Pfaffl, A. Tichopad, C. Prgomet, and T. Neuvians Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations Biotechnol. Lett. 26 2004 509 515 10.1023/B: BILE.0000019559.84305.47
4. P. Murthi, E. Fitzpatrick, A.J. Borg, S. Donath, S.P. Brennecke, and B. Kalionis GAPDH, 18S rRNA and YWHAZ are suitable endogenous reference genes for relative gene expression studies in placental tissues from human idiopathic fetal growth restriction Placenta 29 2008 798 801 http://dx.doi.org/10.1016/j.placenta.2008.06.007
5. M. Meller, S. Vadachkoria, D.A. Luthy, and M.A. Williams Evaluation of housekeeping genes in placental comparative expression studies Placenta 26 2005 601 607 http://dx.doi.org/10.1016/j.placenta.2004.09.009
6. M.N. Carnahan, K.J. Veazey, D. Muller, J.D. Tingling, R.C. Miranda, and M.C. Golding Identification of cell-specific patterns of reference gene stability in quantitative reverse-transcriptase polymerase chain reaction studies of embryonic, placental and neural stem models of prenatal ethanol exposure Alcohol 47 2013 109 120 http://dx.doi.org/10.1016/j.alcohol.2012.12.003
7. C.L. Andersen, J.L. Jensen, and T.F. ∅rntoft Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets Cancer Res. 64 2004 5245 5250 10.1158/0008-5472.CAN-04-0496
8. S.A. Bustin, V. Benes, J.A. Garson, J. Hellemans, J. Huggett, M. Kubista, and et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments Clin. Chem. 55 2009 611 622 10.1373/clinchem.2008.112797
9. H. Wan, Z. Zhao, C. Qian, Y. Sui, A.A. Malik, and J. Chen Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumber Anal. Biochem. 399 2010 257 261 http://dx.doi.org/10.1016/j.ab.2009.12.008
10. F. Herse, B. LaMarca, C.A. Hubel, T. Kaartokallio, A.I. Lokki, E. Ekholm, and et al. Cytochrome P450 subfamily 2J polypeptide 2 expression and circulating epoxyeicosatrienoic metabolites in preeclampsia Circulation 126 2012 2990 2999 10.1161/CIRCULATIONAHA.112.127340
11. K.J. Veazey, and M.C. Golding Selection of stable reference genes for quantitative RT-PCR comparisons of mouse embryonic and extra-embryonic stem cells PLoS One 6 2011 e27592
12. M.E. Solano, M.K. Kowal, G.E. O'Rourke, A.K. Horst, K. Modest, T. Plösch, and et al. Progesterone and HMOX-1 promote fetal growth by CD8+ T cell modulation J. Clin. Investig. 125 2015 1726 1738 10.1172/JCI68140
13. A. Friebe, A. Douglas, E. Solano, S. Blois, E. Hagen, B. Klapp, and et al. Neutralization of LPS or blockage of TLR4 signaling prevents stress-triggered fetal loss in murine pregnancy J. Mol. Med. 89 2011 689 699 10.1007/s00109-011-0743-5
14. K. Thiele, M.E. Solano, S. Huber, R.A. Flavell, T. Kessler, R. Barikbin, and et al. Prenatal acetaminophen application affects maternal immune and endocrine adaptation to pregnancy, induces placental damage and impairs fetal development in mice Am. J. Pathol. 185 2015 2805 2818
15. M. Zhao, Y.-H. Chen, X. Chen, X.-T. Dong, J. Zhou, H. Wang, and et al. Folic acid supplementation during pregnancy protects against lipopolysaccharide-induced neural tube defects in mice Toxicol. Lett. 224 2014 201 208 http://dx.doi.org/10.1016/j.toxlet.2013.10.021
16. I.A. Stelzer, M. Mori, F. DeMayo, J. Lydon, P.C. Arck, and M.E. Solano Differential mouse-strain specific expression of Junctional Adhesion Molecule (JAM)-B in placental structures Cell Adh. Migr. 10 2 2016 (accepted for publication)
17. J.A. Bowen, and J.S. Hunt Expression of cell adhesion molecules in murine placentas and a placental cell line Biol. Reprod. 60 1999 428 434 10.1095/biolreprod60.2.428
18. S. Fleige, and M.W. Pfaffl RNA integrity and the effect on the real-time qRT-PCR performance Mol. Asp. Med. 27 2006 126 139 http://dx.doi.org/10.1016/j.mam.2005.12.003
19. K.J. Livak, and T.D. Schmittgen Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method Methods 25 2001 402 408 http://dx.doi.org/10.1006/meth.2001.1262
20. S. Mylvaganam, L. Zhang, C. Wu, Z.J. Zhang, M. Samoilova, J. Eubanks, and et al. Hippocampal seizures alter the expression of the pannexin and connexin transcriptome J. Neurochem. 112 2010 92 102 10.1111/j.1471-4159.2009.06431.x
21. M. Hughes, B.V. Natale, D.G. Simmons, and D.R.C. Natale Ly6e expression is restricted to syncytiotrophoblast cells of the mouse placenta Placenta 34 2013 831 835 http://dx.doi.org/10.1016/j.placenta.2013.05.011
22. C. Voltolini, S. Battersby, R. Novembri, M. Torricelli, F.M. Severi, F. Petraglia, and et al. Urocortin 2 role in placental and myometrial inflammatory mechanisms at parturition Endocrinology 156 2014 670 679 10.1210/en.2014-1432
23. S. Dhanasekaran, T.M. Doherty, and J. Kenneth Comparison of different standards for real-time PCR-based absolute quantification J. Immunol. Methods 354 2010 34 39 http://dx.doi.org/10.1016/j.jim.2010.01.004
24. J. Rossant, and J.C. Cross Placental development: lessons from mouse mutants Nat. Rev. Genet. 2 2001 538 548
25. D. Lanoix, A.-A. Lacasse, J. St-Pierre, S. Taylor, M. Ethier-Chiasson, J. Lafond, and et al. Quantitative PCR pitfalls: the case of the human placenta Mol. Biotechnol. 52 2012 234 243 10.1007/s12033-012-9539-2
26. J.K. Cleal, P. Day, M.A. Hanson, and R.M. Lewis Measurement of housekeeping genes in human placenta Placenta 30 2009 1002 1003 http://dx.doi.org/10.1016/j.placenta.2009.09.002
27. J.K. Cleal, P.L. Day, M.A. Hanson, and R.M. Lewis Sex Differences in the mRNA levels of housekeeping genes in human placenta Placenta 31 2010 556 557 http://dx.doi.org/10.1016/j.placenta.2010.03.006
28. C.F. Minervini, M. Izumi, and T. Miki Effect of culture conditions on reference genes expression in placenta-derived stem cells Int. J. Stem Cells 2 2009 69 75
29. C. Romani, S. Calza, P. Todeschini, R.A. Tassi, L. Zanotti, E. Bandiera, and et al. Identification of optimal reference genes for gene expression normalization in a wide cohort of endometrioid endometrial carcinoma tissues PLoS One 9 2014 e113781
30. B.R. Everaert, G.A. Boulet, J.-P. Timmermans, and C.J. Vrints Importance of suitable reference gene selection for quantitative real-time PCR: special reference to mouse myocardial infarction studies PLoS One 6 2011 e23793
31. D.G. Ashbrook, A. Delprato, C. Grellmann, M. Klein, R. Wetzel, R.W. Overall, and et al. Transcript co-variance with Nestin in two mouse genetic reference populations identifies Lef1 as a novel candidate regulator of neural precursor cell proliferation in the adult hippocampus Front. Neurosci. 8 2014
32. N. Silver, E. Cotroneo, G. Proctor, S. Osailan, K. Paterson, and G. Carpenter Selection of housekeeping genes for gene expression studies in the adult rat submandibular gland under normal, inflamed, atrophic and regenerative states BMC Mol. Biol. 9 2008 64
33. E.C. Cottrell, M.C. Holmes, D.E. Livingstone, C.J. Kenyon, and J.R. Seckl Reconciling the nutritional and glucocorticoid hypotheses of fetal programming FASEB J. 26 2012 1866 1874 10.1096/fj.12-203489
34. P. Patel, C.A.R. Boyd, D.G. Johnston, and C. Williamson Analysis of GAPDH as a standard for gene expression quantification in human placenta Placenta 23 2002 697 698 http://dx.doi.org/10.1053/plac.2002.0859
35. D.L. Shuster, T.K. Bammler, R.P. Beyer, J.W. MacDonald, J.M. Tsai, F.M. Farin, and et al. Gestational age-dependent changes in gene expression of metabolic enzymes and transporters in pregnant mice Drug Metab. Dispos. 41 2013 332 342 10.1124/dmd.112.049718
36. H. Li, D. Qu, A. McDonald, S.M. Isaac, K.J. Whiteley, H.-K. Sung, and et al. Trophoblast-specific reduction of VEGFA alters placental gene expression and maternal cardiovascular function in mice Biol. Reprod. 91 2014 87 10.1095/biolreprod.114.118299
37. I. Fajardy, E. Moitrot, A. Vambergue, M. Vandersippe-Millot, P. Deruelle, and J. Rousseaux Time course analysis of RNA stability in human placenta BMC Mol. Biol. 10 2009 21
38. X. Huang, M. Baumann, L. Nikitina, F. Wenger, D. Surbek, M. Körner, and et al. RNA degradation differentially affects quantitative mRNA measurements of endogenous reference genes in human placenta Placenta 34 2013 544 547 http://dx.doi.org/10.1016/j.placenta.2013.03.011