Erratum: Expression of concern: RNA editing of microRNA prevents RNA-induced silencing complex recognition of target mRNA (Open Biol. (2015) 5 (150126) DOI: 10.1098/rsob.150126);RNA editing of microRNA prevents RNA-induced silencing complex recognition of target mRNA

Open Biology

Volumn 5, Issue 12, 2015, Pages

  Cui, Yalei ^a   Huang, Tianzhi ^a   Zhang, Xiaobo ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Adenosine deaminase acting on RNA; MiRNA induced silencing complex; RNA Editing; Virus latency

Indexed keywords

MESSENGER RNA; MICRORNA; RNA INDUCED SILENCING COMPLEX;

ANIMAL; ANOSTRACA; GENETICS; METABOLISM; RNA EDITING;

ANIMALS; ANOSTRACA; MICRORNAS; RNA EDITING; RNA, MESSENGER; RNA-INDUCED SILENCING COMPLEX;

EID: 84960534735     PISSN: None     EISSN: 20462441     Source Type: Journal    
DOI: 10.1098/rsob.230300     Document Type: Erratum

References (40)

1. Chan THM et al. 2014 A disrupted RNA editing balance mediated by ADARs (Adenosine DeAminases that act on RNA) in human hepatocellular carcinoma. Gut 63, 832-843. (doi:10.1136/gutjnl-2012-304037)
2. Laurencikiene J, Källman AM, Fong N, Bentley DL, Öhman M. 2006 RNA editing and alternative splicing: the importance of co-transcriptional coordination. EMBO Rep. 7, 303-307. (doi:10.1038/sj.embor.7400621)
3. Jin YF, Zhang WJ, Li Q. 2009 Origins and evolution of ADAR-mediated RNA editing. IUBMB Life 61, 572-578. (doi:10.1002/iub.207)
4. Mallela A, Nishikura K. 2012 A-to-I editing of protein coding and noncoding RNAs. Crit. Rev. Biochem. Mol. 47, 493-501. (doi:10.3109/10409238.2012.714350)
5. Wright A, Vissel B. 2012 The essential role of AMPA receptor GluR2 subunit RNA editing in the normal and diseased brain. Front. Mol. Neurosci. 5, 34. (doi:10.3389/fnmol.2012.00034)
6. Wang QD, O'Brien PJ, Chen CX, Cho DSC, Murray JM, Nishikura K. 2000 Altered G protein-coupling functions of RNA editing isoform and splicing variant serotonin2C receptors. J. Neurochem. 74, 1290-1300. (doi:10.1046/j.1471-4159.2000.741290.x)
7. Levanon EY et al. 2004 Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat. Biotechnol. 22, 1001-1005. (doi:10.1038/nbt996)
8. Levanon EY, Hallegger M, Kinar Y, Shemesh R, Djinovic-Carugo K, Rechavi G, Jantsch MF, Eisenberg E. 2005 Evolutionarily conserved human targets of adenosine to inosine RNA editing. Nucleic Acids Res. 33, 1162-1168. (doi:10.1093/nar/gki239)
9. Kim KKY, Kim TTY, Walsh T, Kobayashi Y, Matise TC, Buyske S, Gabriel A. 2004 Widespread RNA editing of embedded Alu elements in the human transcriptome. Genome Res. 14, 1719-1725. (doi:10.1101/gr.285504)
10. Blow MJ, Grocock RJ, Dongen SV, Enright AJ, Dicks E, Futreal PA, Wooster R, Stratton MR 2006 RNA editing of human microRNAs. Genome Biol. 7, R27. (doi:10.1186/gb-2006-7-4-r27)
11. Kawahara Y, Zinshteyn B, Sethupathy P, Lizasa H, Hatzigeorgiou AG, Nishikura K. 2007 Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 315, 1137-1140. (doi:10.1126/science.1138050)
12. Yang WD, Chendrimada TP, Wang QD, Higuchi M, Seeburg PH, Shiekhatter R, Nishikura K. 2006 Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat. Struct. Mol. Biol. 13, 13-21. (doi:10.1038/nsmb1041)
13. Axtell MJ, Westholm JO, Lai EC 2011 Vive la difference: biogenesis and evolution of microRNAs in plants and animals. Genome Biol. 12, 221. (doi:10.1186/gb-2011-12-4-221)
14. Bartel DP. 2009 MicroRNAs: target recognition and regulatory functions. Cell 136, 215-233. (doi:10.1016/j.cell.2009.01.002)
15. Carthew RW, Sontheimer EJ 2009 Origins and mechanisms of miRNAs and siRNAs. Cell 136, 642-655. (doi:10.1016/j.cell.2009.01.035)
16. Kawahara Y, Zinshteyn B, Chendrimada TP, Shiekhatter R, Nishikura K. 2007 RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex. EMBO Rep. 8, 763-769. (doi:10.1038/sj.embor.7401011)
17. Wong SK, Lazinski DW 2002 Replicating hepatitis delta virus RNA is edited in the nucleus by the small form of ADAR1. Proc. Natl Acad. Sci. USA 99, 15118-15123. (doi:10.1073/pnas.232416799)
18. He YD, Zhang XB 2012 Comprehensive characterization of viral miRNAs involved in white spot syndrome virus (WSSV) infection. RNA Biol. 9, 1019-1029. (doi:10.4161/rna.20741)
19. Huang TZ, Cui YL, Zhang XB 2014 Involvement of viral microRNA in the regulation of antiviral apoptosis in shrimp. J. Virol. 88, 2544-2554. (doi:10.1128/JVI.03575-13)
20. Marks H, Goldbach RW, Vlak JM, van Hulten MCW. 2004 Genetic variation among isolates of white spot syndrome virus. Arch. Virol. 149, 673-697. (doi:10.1007/s00705-003-024809)
21. Yang F, He J, Lin XH, Li Q, Pan D, Zhang XB, Xu X. 2001 Complete genome sequence of the shrimp white spot bacilliform virus. J. Virol. 75, 11811-11820. (doi:10.1128/JVI.75.23.11811-11820.2001)
22. Sanchez-Paz A. 2010 White spot syndrome virus: an overview on an emergent concern. Vet. Res. 41, 43. (doi:10.1051/vetres/2010015)
23. Han F, Xu JY, Zhang XB 2007 Characterization of an early gene (wsv477) from shrimp white spot syndrome virus (WSSV). Virus Genes 34, 193-198. (doi:10.1007/s11262-006-0053-0)
24. He YD, Yang K, Zhang XB 2014 Viral microRNAs targeting virus genes promote virus infection in shrimp in vivo. J. Virol. 88, 1104-1112. (doi:10.1128/JVI.02455-13)
25. Huang TZ, Zhang XB 2012 Functional analysis of a crustacean microRNA in host-virus interactions. J. Virol. 86, 12997-13004. (doi:10.1128/JVI.01702-12)
26. Huang TZ, Xu DD, Zhang XB 2012 Characterization of host microRNAs that respond to DNA virus infection in a crustacean. BMC Genomics 13, 159. (doi:10.1186/1471-2164-13-159)
27. Cullen BR. 2013 MicroRNAs as mediators of viral evasion of the immune system. Nat. Immunol. 14, 205-210. (doi:10.1038/ni.2537)
28. Farajollahi S, Maas S. 2010 Molecular diversity through RNA editing: a balancing act. Trends Genet. 26, 221-230. (doi:10.1016/j.tig.2010.02.001)
29. Nishikura K. 2010 Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 79, 321-349. (doi:10.1146/annurev-biochem-060208-105251)
30. Filipowicz W, Bhattacharyya SN, Sonenberg N. 2008 Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat. Rev. Gene. 9, 102-114. (doi:10.1038/nrg2290)
31. Baek D, Villen J, Shin C, Camargo FD, Gygi SP, Bartel DP 2008 The impact of microRNAs on protein output. Nature 455, 64-71. (doi:10.1038/nature07242)
32. Kiriakidou M, Nelson PT, Kouranov A, Fitziev P, Bouyioukos C, Mourelatos Z, Hatzigeorgiou A. 2004 A combined computational-experimental approach predicts human microRNA targets. Gene Dev. 18, 1165-1178. (doi:10.1101/gad.1184704)
33. Didiano D, Hobert O. 2006 Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions. Nat. Struct. Mol. Biol. 13, 849-851. (doi:10.1038/nsmb1138)
34. Rigoutsos I. 2009 New tricks for animal microRNAs: targeting of amino acid coding regions at conserved and nonconserved sites. Cancer Res. 69, 3245-3248. (doi:10.1158/0008-5472.CAN-09-0352)
35. Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewshy N. 2008 Widespread changes in protein synthesis induced by microRNAs. Nature 455, 58-63. (doi:10.1038/nature07228)
36. Brennecke J, Stark A, Russell RB, Cohen SM 2005 Principles of microRNA-target recognition. PLoS Biol. 3, 0414-0418. (doi:10.1371/journal.pbio.0030085)
37. Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP 2007 MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell 27, 91-105. (doi:10.1016/j.molcel.2007.06.017)
38. Valoczi A, Hornyik C, Varga N, Burgyan J, Kauppinen S, Havelda Z. 2004 Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Res. 32, e175. (doi:10.1093/nar/gnh171)
39. Consortium GO. 2006 The Gene Ontology (GO) project in 2006. Nucleic Acids Res. 34, D322-D326. (doi:10.1093/nar/gkj021)
40. Tian N, Yang Y, Sachsenmaier N, Muggenhumer D, Bi JP, Waldsich C, Jantsch MF, Jin YF 2011 A structural determinant required for RNA editing. Nucleic Acids Res. 39, 5669-5681. (doi:10.1093/nar/gkr144)