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Volumn 13, Issue 1, 2012, Pages

Characterization of host microRNAs that respond to DNA virus infection in a crustacean

Author keywords

EST assembly; Evolution; Go analysis; Invertebrate miRNAs; Sequencing; Virus host interaction; WSSV

Indexed keywords

MICRORNA; MICRORNA 1; MICRORNA 34; MICRORNA 7; RNA; UNCLASSIFIED DRUG;

EID: 84862161373     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-159     Document Type: Article
Times cited : (101)

References (53)
  • 1
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • 10.1126/science.1085242, 12869753
    • Carrington JC, Ambros V. Role of microRNAs in plant and animal development. Science 2003, 301:336-338. 10.1126/science.1085242, 12869753.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 2
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • 10.1038/35053110, 11201747
    • Bernstein E, Caudy AA, Hammond SM, Hannon GJ. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 2001, 409:363-366. 10.1038/35053110, 11201747.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 3
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • 10.1016/S0092-8674(04)00045-5, 14744438
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297. 10.1016/S0092-8674(04)00045-5, 14744438.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • 10.1038/nature02873, 15372041
    • Meister G, Tuschl T. Mechanisms of gene silencing by double-stranded RNA. Nature 2004, 431:343-349. 10.1038/nature02873, 15372041.
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 5
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • 10.1016/S0092-8674(03)00759-1, 14567917
    • Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, Zamore PD. Asymmetry in the assembly of the RNAi enzyme complex. Cell 2003, 115:199-208. 10.1016/S0092-8674(03)00759-1, 14567917.
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1    Hutvagner, G.2    Du, T.3    Xu, Z.4    Aronin, N.5    Zamore, P.D.6
  • 6
    • 23944514849 scopus 로고    scopus 로고
    • Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
    • 10.1016/j.cell.2005.07.031, 16122423
    • Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 2005, 122:553-563. 10.1016/j.cell.2005.07.031, 16122423.
    • (2005) Cell , vol.122 , pp. 553-563
    • Bagga, S.1    Bracht, J.2    Hunter, S.3    Massirer, K.4    Holtz, J.5    Eachus, R.6    Pasquinelli, A.E.7
  • 7
    • 49949116902 scopus 로고    scopus 로고
    • The impact of microRNAs on protein output
    • 10.1038/nature07242, 2745094, 18668037
    • Baek D, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP. The impact of microRNAs on protein output. Nature 2008, 455:64-71. 10.1038/nature07242, 2745094, 18668037.
    • (2008) Nature , vol.455 , pp. 64-71
    • Baek, D.1    Villén, J.2    Shin, C.3    Camargo, F.D.4    Gygi, S.P.5    Bartel, D.P.6
  • 9
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • 10.1038/nature02871, 15372042
    • Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355. 10.1038/nature02871, 15372042.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 10
    • 32644435565 scopus 로고    scopus 로고
    • Drosophila lacking microRNA miR- 278 are defective in energy homeostasis
    • 10.1101/gad.374406, 1369043, 16481470
    • Teleman AA, Maitra S, Cohen SM. Drosophila lacking microRNA miR- 278 are defective in energy homeostasis. Genes Dev 2006, 20:417-422. 10.1101/gad.374406, 1369043, 16481470.
    • (2006) Genes Dev , vol.20 , pp. 417-422
    • Teleman, A.A.1    Maitra, S.2    Cohen, S.M.3
  • 14
    • 66149125689 scopus 로고    scopus 로고
    • The role of RNAi and microRNAs in animal virus replication and antiviral immunity
    • 10.1101/gad.1793309, 2763533, 19451215
    • Umbach JL, Cullen BR. The role of RNAi and microRNAs in animal virus replication and antiviral immunity. Genes Dev 2009, 23:1151-1164. 10.1101/gad.1793309, 2763533, 19451215.
    • (2009) Genes Dev , vol.23 , pp. 1151-1164
    • Umbach, J.L.1    Cullen, B.R.2
  • 16
    • 50949132066 scopus 로고    scopus 로고
    • Human cytomegalovirus infection alters the expression of cellular microRNA species that affect its replication
    • 10.1128/JVI.00961-08, 2546905, 18596100
    • Wang FZ, Weber F, Croce C, Liu CG, Liao X, Pellett PE. Human cytomegalovirus infection alters the expression of cellular microRNA species that affect its replication. J Virol 2008, 82:9065-9074. 10.1128/JVI.00961-08, 2546905, 18596100.
    • (2008) J Virol , vol.82 , pp. 9065-9074
    • Wang, F.Z.1    Weber, F.2    Croce, C.3    Liu, C.G.4    Liao, X.5    Pellett, P.E.6
  • 17
    • 80455140233 scopus 로고    scopus 로고
    • Regulation of Drosophila-virus interaction
    • 10.1016/j.dci.2011.08.007, 21925207
    • Fullaondo A, Lee SY. Regulation of Drosophila-virus interaction. Dev Comp Immunol 2012, 36:262-266. 10.1016/j.dci.2011.08.007, 21925207.
    • (2012) Dev Comp Immunol , vol.36 , pp. 262-266
    • Fullaondo, A.1    Lee, S.Y.2
  • 18
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • 10.1016/0092-8674(93)90529-Y, 8252621
    • Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75:843-854. 10.1016/0092-8674(93)90529-Y, 8252621.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 21
    • 0037033801 scopus 로고    scopus 로고
    • Micro-RNAs: small is plentiful
    • 10.1083/jcb.200111033, 2173595, 11781331
    • Grosshans H, Slack FJ. Micro-RNAs: small is plentiful. J Cell Biol 2002, 156:17-21. 10.1083/jcb.200111033, 2173595, 11781331.
    • (2002) J Cell Biol , vol.156 , pp. 17-21
    • Grosshans, H.1    Slack, F.J.2
  • 22
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • 10.1016/j.cell.2009.01.002, 19167326
    • Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233. 10.1016/j.cell.2009.01.002, 19167326.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 24
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • 10.1016/j.cell.2004.12.035, 15652477
    • Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20. 10.1016/j.cell.2004.12.035, 15652477.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 26
    • 24644476482 scopus 로고    scopus 로고
    • MicroRNA identification based on sequence and structure alignment
    • 10.1093/bioinformatics/bti562, 15994192
    • Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y. MicroRNA identification based on sequence and structure alignment. Bioinformatics 2005, 21:3610-3614. 10.1093/bioinformatics/bti562, 15994192.
    • (2005) Bioinformatics , vol.21 , pp. 3610-3614
    • Wang, X.1    Zhang, J.2    Li, F.3    Gu, J.4    He, T.5    Zhang, X.6    Li, Y.7
  • 27
    • 0038054470 scopus 로고    scopus 로고
    • Computational and experimental identification of C. elegans microRNAs
    • 10.1016/S1097-2765(03)00153-9, 12769849
    • Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J. Computational and experimental identification of C. elegans microRNAs. Mol Cell 2003, 11:1253-1263. 10.1016/S1097-2765(03)00153-9, 12769849.
    • (2003) Mol Cell , vol.11 , pp. 1253-1263
    • Grad, Y.1    Aach, J.2    Hayes, G.D.3    Reinhart, B.J.4    Church, G.M.5    Ruvkun, G.6    Kim, J.7
  • 28
    • 3142726606 scopus 로고    scopus 로고
    • Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning
    • Ambros V, Lee RC. Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning. Methods Mol Biol 2004, 265:131-158.
    • (2004) Methods Mol Biol , vol.265 , pp. 131-158
    • Ambros, V.1    Lee, R.C.2
  • 30
    • 34249676900 scopus 로고    scopus 로고
    • Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus
    • 10.1016/j.virol.2007.03.029, 1941761, 17451774
    • Schafer A, Cai X, Bilello JP, Desrosiers RC, Cullen BR. Cloning and analysis of microRNAs encoded by the primate gamma-herpesvirus rhesus monkey rhadinovirus. Virology 2007, 364:21-27. 10.1016/j.virol.2007.03.029, 1941761, 17451774.
    • (2007) Virology , vol.364 , pp. 21-27
    • Schafer, A.1    Cai, X.2    Bilello, J.P.3    Desrosiers, R.C.4    Cullen, B.R.5
  • 31
    • 79951958731 scopus 로고    scopus 로고
    • Discovery of barley miRNAs through deep sequencing of short reads
    • 10.1186/1471-2164-12-129, 3060140, 21352554
    • Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U. Discovery of barley miRNAs through deep sequencing of short reads. BMC Genomics 2011, 12:129. 10.1186/1471-2164-12-129, 3060140, 21352554.
    • (2011) BMC Genomics , vol.12 , pp. 129
    • Schreiber, A.W.1    Shi, B.J.2    Huang, C.Y.3    Langridge, P.4    Baumann, U.5
  • 32
    • 0032077802 scopus 로고    scopus 로고
    • Detection of white spot syndrome associated baculovirus WSBV in experimentally infected wild shrimps crabs and lobsters by in situ hybridization
    • Chang PS, Chen HC, Wand YC. Detection of white spot syndrome associated baculovirus WSBV in experimentally infected wild shrimps crabs and lobsters by in situ hybridization. Aquaculture 1998, 164:23-43.
    • (1998) Aquaculture , vol.164 , pp. 23-43
    • Chang, P.S.1    Chen, H.C.2    Wand, Y.C.3
  • 33
    • 33947185368 scopus 로고    scopus 로고
    • Characterization of an early gene (wsv477) from shrimp white spot syndrome virus (WSSV)
    • 10.1007/s11262-006-0053-0, 17139550
    • Han F, Xu J, Zhang X. Characterization of an early gene (wsv477) from shrimp white spot syndrome virus (WSSV). Virus Genes 2007, 34(2):193-198. 10.1007/s11262-006-0053-0, 17139550.
    • (2007) Virus Genes , vol.34 , Issue.2 , pp. 193-198
    • Han, F.1    Xu, J.2    Zhang, X.3
  • 34
    • 0033046220 scopus 로고    scopus 로고
    • Mechanisms of phagocytosis in macrophages
    • 10.1146/annurev.immunol.17.1.593, 10358769
    • Aderem A, Underhill DM. Mechanisms of phagocytosis in macrophages. Annu Rev Immunol 1999, 17:593-623. 10.1146/annurev.immunol.17.1.593, 10358769.
    • (1999) Annu Rev Immunol , vol.17 , pp. 593-623
    • Aderem, A.1    Underhill, D.M.2
  • 35
    • 0034537290 scopus 로고    scopus 로고
    • Autophagy as a regulated pathway of cellular degradation
    • 2732363, 11099404
    • Klionsky DJ, Emr SD. Autophagy as a regulated pathway of cellular degradation. Science 2000, 290:1717-1721. 2732363, 11099404.
    • (2000) Science , vol.290 , pp. 1717-1721
    • Klionsky, D.J.1    Emr, S.D.2
  • 36
    • 44649172694 scopus 로고    scopus 로고
    • KSHV LANA inhibits TGF-b signaling through epigenetic silencing of the TGF-b type II receptor
    • 10.1182/blood-2007-09-110544, 2343603, 18199825
    • Di Bartolo DL, Cannon M, Liu YF, Renne R, Chadburn A, Boshoff C, Cesarman E. KSHV LANA inhibits TGF-b signaling through epigenetic silencing of the TGF-b type II receptor. Blood 2008, 111:4731-4740. 10.1182/blood-2007-09-110544, 2343603, 18199825.
    • (2008) Blood , vol.111 , pp. 4731-4740
    • Di Bartolo, D.L.1    Cannon, M.2    Liu, Y.F.3    Renne, R.4    Chadburn, A.5    Boshoff, C.6    Cesarman, E.7
  • 38
    • 61349100846 scopus 로고    scopus 로고
    • MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals
    • 10.1186/1742-4690-5-118, 2644721, 19114009
    • Houzet L, Yeung ML, de Lame V, Desai D, Smith SM, Jeang KT. MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals. Retrovirology 2008, 5:118. 10.1186/1742-4690-5-118, 2644721, 19114009.
    • (2008) Retrovirology , vol.5 , pp. 118
    • Houzet, L.1    Yeung, M.L.2    de Lame, V.3    Desai, D.4    Smith, S.M.5    Jeang, K.T.6
  • 39
    • 56349103169 scopus 로고    scopus 로고
    • Epstein-Barr virus growth/latency III program alters cellular microRNA expression
    • 10.1016/j.virol.2008.09.018, 2640950, 18950829
    • Cameron JE, Fewell C, Yin Q, McBride J, Wang X, Lin Z, Flemington EK. Epstein-Barr virus growth/latency III program alters cellular microRNA expression. Virology 2008, 382(2):257-266. 10.1016/j.virol.2008.09.018, 2640950, 18950829.
    • (2008) Virology , vol.382 , Issue.2 , pp. 257-266
    • Cameron, J.E.1    Fewell, C.2    Yin, Q.3    McBride, J.4    Wang, X.5    Lin, Z.6    Flemington, E.K.7
  • 40
    • 35048818922 scopus 로고    scopus 로고
    • Dicer is involved in protection against influenza A virus infection
    • 10.1099/vir.0.83103-0, 17872512
    • Matskevich AA, Moelling K. Dicer is involved in protection against influenza A virus infection. J Gen Virol 2007, 88:2627-2635. 10.1099/vir.0.83103-0, 17872512.
    • (2007) J Gen Virol , vol.88 , pp. 2627-2635
    • Matskevich, A.A.1    Moelling, K.2
  • 41
    • 60249083292 scopus 로고    scopus 로고
    • Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection
    • 10.1182/blood-2008-09-175000, 2628373, 19015395
    • Wang X, Ye L, Hou W, Zhou Y, Wang YJ, Metzger DS, Ho WZ. Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection. Blood 2009, 113:671-674. 10.1182/blood-2008-09-175000, 2628373, 19015395.
    • (2009) Blood , vol.113 , pp. 671-674
    • Wang, X.1    Ye, L.2    Hou, W.3    Zhou, Y.4    Wang, Y.J.5    Metzger, D.S.6    Ho, W.Z.7
  • 42
    • 24644483623 scopus 로고    scopus 로고
    • Modulation of hepatitis C virus RNA abundance by a liver-specific micro- RNA
    • 10.1126/science.1113329, 16141076
    • Jopling CL, Yi MK, Lancaster AM, Lemon SM, Sarnow P. Modulation of hepatitis C virus RNA abundance by a liver-specific micro- RNA. Science 2005, 309:1577-1581. 10.1126/science.1113329, 16141076.
    • (2005) Science , vol.309 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.K.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 43
    • 0033755010 scopus 로고    scopus 로고
    • Hepatitis C virus core protein activates the MAPK/ERK cascade synergistically with tumor promoter TPA, but not with epidermal growth factor or transforming growth factor alpha
    • 10.1053/jhep.2000.19343, 11050045
    • Hayashi J, Aoki H, Kajino K, Moriyama M, Arakawa Y, Hino O. Hepatitis C virus core protein activates the MAPK/ERK cascade synergistically with tumor promoter TPA, but not with epidermal growth factor or transforming growth factor alpha. Hepatology 2000, 32(5):958-961. 10.1053/jhep.2000.19343, 11050045.
    • (2000) Hepatology , vol.32 , Issue.5 , pp. 958-961
    • Hayashi, J.1    Aoki, H.2    Kajino, K.3    Moriyama, M.4    Arakawa, Y.5    Hino, O.6
  • 45
    • 0036140260 scopus 로고    scopus 로고
    • Visna virus-induced activation of MAPK is required for virus replication and correlates with virus-induced neuropathology
    • 10.1128/JVI.76.2.817-828.2002, 136850, 11752171
    • Barber SA, Bruett L, Douglass BR, Herbst DS, Zink MC, Clements JE. Visna virus-induced activation of MAPK is required for virus replication and correlates with virus-induced neuropathology. J Virol 2002, 76(2):817-828. 10.1128/JVI.76.2.817-828.2002, 136850, 11752171.
    • (2002) J Virol , vol.76 , Issue.2 , pp. 817-828
    • Barber, S.A.1    Bruett, L.2    Douglass, B.R.3    Herbst, D.S.4    Zink, M.C.5    Clements, J.E.6
  • 46
    • 13144276311 scopus 로고    scopus 로고
    • Identification of white spot syndrome virus (WSSV) envelope proteins involved in shrimp infection
    • 10.1016/j.virol.2004.12.011, 15680422
    • Wu WL, Wang L, Zhang XB. Identification of white spot syndrome virus (WSSV) envelope proteins involved in shrimp infection. Virology 2005, 332:578-583. 10.1016/j.virol.2004.12.011, 15680422.
    • (2005) Virology , vol.332 , pp. 578-583
    • Wu, W.L.1    Wang, L.2    Zhang, X.B.3
  • 47
    • 84864814638 scopus 로고    scopus 로고
    • NCBI
    • NCBI NCBI., http://www.ncbi.nlm.nih.gov/
  • 48
    • 84864822725 scopus 로고    scopus 로고
    • MFOLD program (version 2.38)
    • MFOLD program (version 2.38) MFOLD program (version 2.38)., http://mfold.rna.albany.edu/?q=mfold/RNA-Folding-Form
  • 49
    • 84864814634 scopus 로고    scopus 로고
    • CAP3 Sequence Assembly Program
    • CAP3 Sequence Assembly Program CAP3 Sequence Assembly Program., http://pbil.univ-lyon1.fr/cap3.php
  • 50
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 10.1101/gr.9.9.868, 310812, 10508846
    • Huang X, Madan A. CAP3: A DNA sequence assembly program. Genome Res 1999, 9(9):868-877. 10.1101/gr.9.9.868, 310812, 10508846.
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 51
    • 84864795755 scopus 로고    scopus 로고
    • TargetScan 5.1
    • TargetScan 5.1 TargetScan 5.1., http://www.targetscan.org
  • 52
    • 84864814636 scopus 로고    scopus 로고
    • miRanda
    • miRanda miRanda., http://www.microrna.org/
  • 53
    • 84864814635 scopus 로고    scopus 로고
    • Gene Ontology database
    • Gene Ontology database Gene Ontology database., http://www.geneontology.org


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