-
1
-
-
33749232081
-
Featured organism: Danio rerio, the zebrafish
-
Wixon J. Featured organism: Danio rerio, the zebrafish. Yeast. 2000;17(3):225-31.
-
(2000)
Yeast
, vol.17
, Issue.3
, pp. 225-231
-
-
Wixon, J.1
-
2
-
-
84876798186
-
The zebrafish reference genome sequence and its relationship to the human genome
-
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, et al. The zebrafish reference genome sequence and its relationship to the human genome. Nature. 2013;496(7446):498-503.
-
(2013)
Nature
, vol.496
, Issue.7446
, pp. 498-503
-
-
Howe, K.1
Clark, M.D.2
Torroja, C.F.3
Torrance, J.4
Berthelot, C.5
Muffato, M.6
-
3
-
-
0033765282
-
Zebrafish: bridging the gap between development and disease
-
Dodd A, Curtis PM, Williams LC, Love DR. Zebrafish: bridging the gap between development and disease. Hum Mol Genet. 2000;9(16):2443-9.
-
(2000)
Hum Mol Genet
, vol.9
, Issue.16
, pp. 2443-2449
-
-
Dodd, A.1
Curtis, P.M.2
Williams, L.C.3
Love, D.R.4
-
4
-
-
34250685667
-
Zebrafish: an emerging model system for human disease and drug discovery
-
Kari G, Rodeck U, Dicker AP. Zebrafish: an emerging model system for human disease and drug discovery. Clin Pharmacol Ther. 2007;82(1):70-80.
-
(2007)
Clin Pharmacol Ther
, vol.82
, Issue.1
, pp. 70-80
-
-
Kari, G.1
Rodeck, U.2
Dicker, A.P.3
-
5
-
-
84863637592
-
Think small: zebrafish as a model system of human pathology
-
Goldsmith JR, Jobin C. Think small: zebrafish as a model system of human pathology. J Biomed Biotechnol. 2012;2012:817341.
-
(2012)
J Biomed Biotechnol
, vol.2012
, pp. 817341
-
-
Goldsmith, J.R.1
Jobin, C.2
-
6
-
-
1942435249
-
Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs
-
Bartel DP, Chen CZ. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet. 2004;5(5):396-400.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.Z.2
-
7
-
-
84859892863
-
MicroRNA profiling: approaches and considerations
-
Pritchard CC, Cheng HH, Tewari M. MicroRNA profiling: approaches and considerations. Nat Rev Genet. 2012;13(5):358-69.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.5
, pp. 358-369
-
-
Pritchard, C.C.1
Cheng, H.H.2
Tewari, M.3
-
8
-
-
0037197803
-
Identification of tissue-specific microRNAs from mouse
-
Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T. Identification of tissue-specific microRNAs from mouse. Curr Biol. 2002;12(9):735-9.
-
(2002)
Curr Biol
, vol.12
, Issue.9
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
Tuschl, T.6
-
9
-
-
84877921098
-
miRNA profiling of cancer
-
Di Leva G, Croce CM. miRNA profiling of cancer. Curr Opin Genet Dev. 2013;23(1):3-11.
-
(2013)
Curr Opin Genet Dev
, vol.23
, Issue.1
, pp. 3-11
-
-
Leva, G.1
Croce, C.M.2
-
10
-
-
24344494340
-
How microRNAs control cell division, differentiation and death
-
Miska EA. How microRNAs control cell division, differentiation and death. Curr Opin Genet Dev. 2005;15(5):563-8.
-
(2005)
Curr Opin Genet Dev
, vol.15
, Issue.5
, pp. 563-568
-
-
Miska, E.A.1
-
11
-
-
63049108034
-
MicroRNA in cell differentiation and development
-
Shi Y, Jin Y. MicroRNA in cell differentiation and development. Sci China C Life Sci. 2009;52(3):205-11.
-
(2009)
Sci China C Life Sci
, vol.52
, Issue.3
, pp. 205-211
-
-
Shi, Y.1
Jin, Y.2
-
12
-
-
1942494040
-
Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation
-
Sempere LF, Freemantle S, Pitha-Rowe I, Moss E, Dmitrovsky E, Ambros V. Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation. Genome Biol. 2004;5(3):R13.
-
(2004)
Genome Biol
, vol.5
, Issue.3
, pp. R13
-
-
Sempere, L.F.1
Freemantle, S.2
Pitha-Rowe, I.3
Moss, E.4
Dmitrovsky, E.5
Ambros, V.6
-
13
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, et al. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res. 2005;33(20), e179.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.20
-
-
Chen, C.1
Ridzon, D.A.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
Nguyen, J.T.6
-
14
-
-
16344383409
-
Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs
-
Sun Y, Koo S, White N, Peralta E, Esau C, Dean NM, et al. Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs. Nucleic Acids Res. 2004;32(22), e188.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.22
-
-
Sun, Y.1
Koo, S.2
White, N.3
Peralta, E.4
Esau, C.5
Dean, N.M.6
-
15
-
-
33749377869
-
Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
-
Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, et al. Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Res. 2006;16(10):1289-98.
-
(2006)
Genome Res
, vol.16
, Issue.10
, pp. 1289-1298
-
-
Berezikov, E.1
Tetering, G.2
Verheul, M.3
Belt, J.4
Laake, L.5
Vos, J.6
-
16
-
-
57149085481
-
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
-
t' Hoen PA, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RH, de Menezes RX, et al. Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res. 2008;36(21):e141.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.21
, pp. e141
-
-
t' Hoen, P.A.1
Ariyurek, Y.2
Thygesen, H.H.3
Vreugdenhil, E.4
Vossen, R.H.5
Menezes, R.X.6
-
17
-
-
69249147045
-
Expression profiling of microRNAs by deep sequencing
-
Creighton CJ, Reid JG, Gunaratne PH. Expression profiling of microRNAs by deep sequencing. Brief Bioinform. 2009;10(5):490-7.
-
(2009)
Brief Bioinform
, vol.10
, Issue.5
, pp. 490-497
-
-
Creighton, C.J.1
Reid, J.G.2
Gunaratne, P.H.3
-
18
-
-
22344449952
-
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
-
Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, et al. The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev. 2005;19(11):1288-93.
-
(2005)
Genes Dev
, vol.19
, Issue.11
, pp. 1288-1293
-
-
Chen, P.Y.1
Manninga, H.2
Slanchev, K.3
Chien, M.4
Russo, J.J.5
Ju, J.6
-
19
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, Van Dongen S, Inoue K, et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science. 2006;312(5770):75-9.
-
(2006)
Science
, vol.312
, Issue.5770
, pp. 75-79
-
-
Giraldez, A.J.1
Mishima, Y.2
Rihel, J.3
Grocock, R.J.4
Dongen, S.5
Inoue, K.6
-
20
-
-
33646913875
-
Cloning and expression of new microRNAs from zebrafish
-
Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, et al. Cloning and expression of new microRNAs from zebrafish. Nucleic Acids Res. 2006;34(9):2558-69.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.9
, pp. 2558-2569
-
-
Kloosterman, W.P.1
Steiner, F.A.2
Berezikov, E.3
Bruijn, E.4
Belt, J.5
Verheul, M.6
-
21
-
-
65949098165
-
Parallel DNA pyrosequencing unveils new zebrafish microRNAs
-
Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, et al. Parallel DNA pyrosequencing unveils new zebrafish microRNAs. BMC Genomics. 2009;10:195.
-
(2009)
BMC Genomics
, vol.10
, pp. 195
-
-
Soares, A.R.1
Pereira, P.M.2
Santos, B.3
Egas, C.4
Gomes, A.C.5
Arrais, J.6
-
22
-
-
84859885207
-
Transcriptome-wide analysis of small RNA expression in early zebrafish development
-
Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG. Transcriptome-wide analysis of small RNA expression in early zebrafish development. RNA. 2012;18(5):915-29.
-
(2012)
RNA
, vol.18
, Issue.5
, pp. 915-929
-
-
Wei, C.1
Salichos, L.2
Wittgrove, C.M.3
Rokas, A.4
Patton, J.G.5
-
23
-
-
0347755643
-
The microRNA Registry
-
Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res. 2004;32(Database issue):D109-11.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.DATABASE ISSUE
, pp. D109-D111
-
-
Griffiths-Jones, S.1
-
24
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006;34(Database issue):D140-4.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.DATABASE ISSUE
, pp. D140-D144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
25
-
-
38549150275
-
miRBase: tools for microRNA genomics
-
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Res. 2008;36(Database issue):D154-8.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
, pp. D154-D158
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Dongen, S.3
Enright, A.J.4
-
26
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011;39(Database issue):D152-7.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
27
-
-
84891818318
-
miRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2014;42(Database issue):D68-73.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
28
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, et al. Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol. 2008;26(4):407-15.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.4
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
-
29
-
-
84855293838
-
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 2012;40(1):37-52.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.1
, pp. 37-52
-
-
Friedlander, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
30
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26(1):139-40.
-
(2010)
Bioinformatics
, vol.26
, Issue.1
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
31
-
-
0033966406
-
piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells
-
Cox DN, Chao A, Lin H. piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development. 2000;127(3):503-14.
-
(2000)
Development
, vol.127
, Issue.3
, pp. 503-514
-
-
Cox, D.N.1
Chao, A.2
Lin, H.3
-
32
-
-
34047154356
-
A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish
-
Houwing S, Kamminga LM, Berezikov E, Cronembold D, Girard A, van den Elst H, et al. A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish. Cell. 2007;129(1):69-82.
-
(2007)
Cell
, vol.129
, Issue.1
, pp. 69-82
-
-
Houwing, S.1
Kamminga, L.M.2
Berezikov, E.3
Cronembold, D.4
Girard, A.5
Elst, H.6
-
33
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnetjournal. 2011;17:10-2.
-
(2011)
EMBnetjournal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
34
-
-
77954270706
-
Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood
-
Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, et al. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. BMC Genomics. 2010;11:288.
-
(2010)
BMC Genomics
, vol.11
, pp. 288
-
-
Vaz, C.1
Ahmad, H.M.2
Sharma, P.3
Gupta, R.4
Kumar, L.5
Kulshreshtha, R.6
|