DNA aptamers for the detection of Haemophilus influenzae type b by cell SELEX

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 35, Issue 3, 2016, Pages 503-510

  Bitaraf, F S ^a   Rasooli, I ^a   Mousavi Gargari, S L ^a  

^a SHAHED UNIVERSITY   (Iran)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; SINGLE STRANDED DNA; SINGLE STRANDED RNA;

ANALYTIC METHOD; ARTICLE; BACTERIUM DETECTION; BINDING AFFINITY; CEREBROSPINAL FLUID; DISSOCIATION CONSTANT; FLOW CYTOMETRY; HAEMOPHILUS INFLUENZAE TYPE B; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT TECHNOLOGY; CHEMISTRY; CONFORMATION; GENETICS; HAEMOPHILUS INFECTIONS; HUMAN; MICROBIOLOGY; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT APTAMER TECHNIQUE;

APTAMERS, NUCLEOTIDE; FLOW CYTOMETRY; HAEMOPHILUS INFECTIONS; HAEMOPHILUS INFLUENZAE TYPE B; HUMANS; NUCLEIC ACID CONFORMATION; POLYMERASE CHAIN REACTION; SELEX APTAMER TECHNIQUE; SENSITIVITY AND SPECIFICITY;

EID: 84959512499     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-015-2567-7     Document Type: Article

References (33)

1. Murphy TF, Brauer AL, Sethi S, Kilian M, Cai X, Lesse AJ (2007) Haemophilus haemolyticus: a human respiratory tract commensal to be distinguished from Haemophilus influenzae. J Infect Dis 195:81–89
2. Cody AJ, Field D, Feil EJ, Stringer S, Deadman ME, Tsolaki AG, Gratz B, Bouchet V, Goldstein R, Hood DW, Moxon ER (2003) High rates of recombination in otitis media isolates of non-typeable Haemophilus influenzae. Infect Genet Evol 3:57–66
3. Pettigrew MM, Laufer AS, Gent JF, Kong Y, Fennie KP, Metlay JP (2012) Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children. Appl Environ Microbiol 78:6262–6270
4. Kroll JS, Loynds B, Brophy LN, Moxon ER (1990) The bex locus in encapsulated Haemophilus influenzae: a chromosomal region involved in capsule polysaccharide export. Mol Microbiol 4:1853–1862
5. Saeed-Kothe A, Yang W, Mills SD (2004) Use of the riboflavin synthase gene (ribC) as a model for development of an essential gene disruption and complementation system for Haemophilus influenzae. Appl Environ Microbiol 70:4136–4143
6. Tian GZ, Zhang LJ, Wang XL, Zhang L, Li SF, Gu CM, Sun J, Cui BY (2012) Rapid detection of Haemophilus influenzae and haemophilus parainfluenzae in nasopharyngeal swabs by multiplex PCR. Biomed Environ Sci 25:367–371
7. Morris SK, Moss WJ, Halsey N (2008) Haemophilus influenzae type b conjugate vaccine use and effectiveness. Lancet Infect Dis 8:435–443
8. Rana R, Dalal J, Singh D, Kumar N, Hanif S, Joshi N, Chhikara MK (2015) Development and characterization of haemophilus influenzae type b conjugate vaccine prepared using different polysaccharide chain lengths. Vaccine 33:2646–2654
9. Brouwer MC, Tunkel AR, van de Beek D (2010) Epidemiology, diagnosis, and antimicrobial treatment of acute bacterial meningitis. Clin Microbiol Rev 23:467–492
10. Sneed BP, Scheld WM (2013) Acute bacterial meningitis. Hosp Med Clin 2:e358–e369
11. van de Beek D, Brouwer MC, Thwaites GE, Tunkel AR (2012) Advances in treatment of bacterial meningitis. Lancet 380:1693–1702
12. Thigpen MC, Whitney CG, Messonnier NE, Zell ER, Lynfield R, Hadler JL, Harrison LH, Farley MM, Reingold A, Bennett NM, Craig AS, Schaffner W, Thomas A, Lewis MM, Scallan E, Schuchat A; Emerging Infections Programs Network (2011) Bacterial meningitis in the United States, 1998–2007. N Engl J Med 364:2016–2025
13. Prasad K, Rai NK, Kumar A (2012) Use of corticosteroids and other adjunct therapies for acute bacterial meningitis in adults. Curr Infect Dis Rep 14:445–453
14. Yang L, Bashir R (2008) Electrical/electrochemical impedance for rapid detection of foodborne pathogenic bacteria. Biotechnol Adv 26:135–150
15. Hussein AS, Shafran SD (2000) Acute bacterial meningitis in adults. A 12-year review. Medicine (Baltimore) 79(6):360–368
16. Abdeldaim GM, Herrmann B (2013) PCR detection of Haemophilus influenzae from respiratory specimens. Methods Mol Biol 943:115–123
17. Arlett JL, Myers EB, Roukes ML (2011) Comparative advantages of mechanical biosensors. Nat Nanotechnol 6:203–215
18. Torres-Chavolla E, Alocilja EC (2009) Aptasensors for detection of microbial and viral pathogens. Biosens Bioelectron 24:3175–3182
19. Wang YX, Ye ZZ, Si CY, Ying YB (2012) Application of aptamer based biosensors for detection of pathogenic microorganisms. Chin J Analyt Chem 40:634–642
20. Yang Y, Yang D, Schluesener HJ, Zhang Z (2007) Advances in SELEX and application of aptamers in the central nervous system. Biomol Eng 24:583–592
21. Tombelli S, Minunni M, Mascini M (2005) Analytical applications of aptamers. Biosens Bioelectron 20:2424–2434
22. Song S, Wang L, Li J, Fan C, Zhao J (2008) Aptamer-based biosensors. TrAC Trend Anal Chem 27:108–117
23. Van Dorst B, Mehta J, Bekaert K, Rouah-Martin E, De Coen W, Dubruel P, Blust R, Robbens J (2010) Recent advances in recognition elements of food and environmental biosensors: a review. Biosens Bioelectron 26:1178–1194
24. Hamula CLA, Zhang H, Li F, Wang Z, Le Chris X, Li XF (2011) Selection and analytical applications of aptamers binding microbial pathogens. TrAC Trend Anal Chem 30:1587–1597
25. Kim YS, Song MY, Jurng J, Kim BC (2013) Isolation and characterization of DNA aptamers against Escherichia coli using a bacterial cell-systematic evolution of ligands by exponential enrichment approach. Anal Biochem 436:22–28
26. Dwivedi HP, Smiley RD, Jaykus LA (2010) Selection and characterization of DNA aptamers with binding selectivity to Campylobacter jejuni using whole-cell SELEX. Appl Microbiol Biotechnol 87:2323–2334
27. Cao X, Li S, Chen L, Ding H, Xu H, Huang Y, Li J, Liu N, Cao W, Zhu Y, Shen B, Shao N (2009) Combining use of a panel of ssDNA aptamers in the detection of Staphylococcus aureus. Nucleic Acids Res 37:4621–4628
28. Duan N, Ding X, He L, Wu S, Wei Y, Wang Z (2013) Selection, identification and application of a DNA aptamer against Listeria monocytogenes. Food Control 33:239–243
29. Dwivedi HP, Smiley RD, Jaykus LA (2013) Selection of DNA aptamers for capture and detection of Salmonella Typhimurium using a whole-cell SELEX approach in conjunction with cell sorting. Appl Microbiol Biotechnol 97:3677–3686
30. Vivekananda J, Kiel JL (2006) Anti-Francisella tularensis DNA aptamers detect tularemia antigen from different subspecies by Aptamer-Linked Immobilized Sorbent Assay. Lab Invest 86:610–618
31. Chen F, Zhou J, Luo F, Mohammed AB, Zhang XL (2007) Aptamer from whole-bacterium SELEX as new therapeutic reagent against virulent Mycobacterium tuberculosis. Biochem Biophys Res Commun 357:743–748
32. Avci-Adali M, Paul A, Wilhelm N, Ziemer G, Wendel HP (2009) Upgrading SELEX technology by using lambda exonuclease digestion for single-stranded DNA generation. Molecules 15:1–11
33. Barfod A, Singh B, Johanson U, Riesbeck K, Kjellbom P (2014) In vitro selection of RNA aptamers directed against protein E: a Haemophilus influenzae adhesin. Mol Biotechnol 56:714–725