-
1
-
-
84921440867
-
High-resolution linkage map and chromosome-scale genome assembly for cassava (Manihot esculenta Crantz) from 10 populations
-
Alaba, O.A., J.V. Bredeson, C.N. Egesi, et al. 2015. High-resolution linkage map and chromosome-scale genome assembly for cassava (Manihot esculenta Crantz) from 10 populations. G3: Genes Genomes Genet. 5:133-144. doi:10.1534/g3.114.015008
-
(2015)
G3: Genes Genomes Genet.
, vol.5
, pp. 133-144
-
-
Alaba, O.A.1
Bredeson, J.V.2
Egesi, C.N.3
-
2
-
-
84863591750
-
Accuracy and training population design for genomic selection on quantitative traits in elite North American oats
-
Asoro, F.G., M.A. Newell, W.D. Beavis, M.P. Scott, and J.L. Jannink. 2011. Accuracy and training population design for genomic selection on quantitative traits in elite North American oats. Plant Gen. 4:132-144. doi:10.3835/plantgenome2011.02.0007
-
(2011)
Plant Gen.
, vol.4
, pp. 132-144
-
-
Asoro, F.G.1
Newell, M.A.2
Beavis, W.D.3
Scott, M.P.4
Jannink, J.L.5
-
3
-
-
84908402731
-
Potential of association mapping and genomic selection to explore PI 88788 derived soybean cyst nematode resistance
-
Bao, Y., T. Vuong, C. Meinhardt, P. Tiffin, R. Denny, S.Y. Chen, H.T. Nguyen, J.H. Orf, and N.D. Young. 2014. Potential of association mapping and genomic selection to explore PI 88788 derived soybean cyst nematode resistance. Plant Gen. 7. doi:10.3835/plantgenome2013.11.0039
-
(2014)
Plant Gen.
, pp. 7
-
-
Bao, Y.1
Vuong, T.2
Meinhardt, C.3
Tiffin, P.4
Denny, R.5
Chen, S.Y.6
Nguyen, H.T.7
Orf, J.H.8
Young, N.D.9
-
4
-
-
13444269543
-
Haploview: Analysis and visualization of LD and haplotype maps
-
Barrett, J.C., B. Fry, J. Maller, and M.J. Daly. 2005. Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 21:263-265. doi:10.1093/bioinformatics/bth457
-
(2005)
Bioinformatics
, vol.21
, pp. 263-265
-
-
Barrett, J.C.1
Fry, B.2
Maller, J.3
Daly, M.J.4
-
6
-
-
84991929147
-
A high-density linkage map for Astyanax mexicanus using genotyping-by-sequencing technology
-
Carlson, B.M., S.W. Onusko, and J.B. Gross. 2015. A high-density linkage map for Astyanax mexicanus using genotyping-by-sequencing technology. G3: Genes Genomes Genet. 5:241-251. doi:10.1534/ g3.114.015438
-
(2015)
G3: Genes Genomes Genet.
, vol.5
, pp. 241-251
-
-
Carlson, B.M.1
Onusko, S.W.2
Gross, J.B.3
-
7
-
-
84925537016
-
Genomic selection prediction accuracy in a perennial crop: Case study of oil palm (Elaeis guineensis Jacq.)
-
Cros, D., M. Denis, L. Sanchez, B. Cochard, A. Flori, T. Durand-Gasselin, B. Nouy, A. Omore, V. Pomies, V. Riou, E. Suryana, and J.M. Bouvet. 2015. Genomic selection prediction accuracy in a perennial crop: Case study of oil palm (Elaeis guineensis Jacq.). Theor. Appl. Genet. 128:397-410. doi:10.1007/s00122-014-2439-z
-
(2015)
Theor. Appl. Genet.
, vol.128
, pp. 397-410
-
-
Cros, D.1
Denis, M.2
Sanchez, L.3
Cochard, B.4
Flori, A.5
Durand-Gasselin, T.6
Nouy, B.7
Omore, A.8
Pomies, V.9
Riou, V.10
Suryana, E.11
Bouvet, J.M.12
-
8
-
-
84877288390
-
Soil and water quality rapidly responds to the perennial grain Kernza wheatgrass
-
Culman, S.W., S.S. Snapp, M. Ollenburger, B. Basso, and L.R. DeHaan. 2013. Soil and water quality rapidly responds to the perennial grain Kernza wheatgrass. Agron. J. 105:735-744. doi:10.2134/ agronj2012.0273
-
(2013)
Agron. J.
, vol.105
, pp. 735-744
-
-
Culman, S.W.1
Snapp, S.S.2
Ollenburger, M.3
Basso, B.4
DeHaan, L.R.5
-
9
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey, J.W., P.A. Hohenlohe, P.D. Etter, J.Q. Boone, J.M. Catchen, and M.L. Blaxter. 2011. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat. Rev. Genet. 12:499-510. doi:10.1038/nrg3012
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
10
-
-
71549118527
-
Reliability of genomic predictions across multiple populations
-
de Roos, A.P.W., B.J. Hayes, and M.E. Goddard. 2009. Reliability of genomic predictions across multiple populations. Genetics 183:1545-1553. doi:10.1534/genetics.109.104935
-
(2009)
Genetics
, vol.183
, pp. 1545-1553
-
-
de Roos, A.P.W.1
Hayes, B.J.2
Goddard, M.E.3
-
11
-
-
84950242564
-
Current efforts to develop perennial wheat and domesticate Thinopyrum intermedium as a perennial grain
-
C. Batello et al., editors
-
DeHaan, L.R., S. Wang, S. Larson, T. Kantarski, X. Zhang, and D. Cattani. 2014. Current efforts to develop perennial wheat and domesticate Thinopyrum intermedium as a perennial grain. In: C. Batello et al., editors, Perennial crops for food security: Proc. of the FAO expert workshop. p. 72-89.
-
(2014)
Perennial crops for food security: Proc. of the FAO expert workshop
, pp. 72-89
-
-
DeHaan, L.R.1
Wang, S.2
Larson, S.3
Kantarski, T.4
Zhang, X.5
Cattani, D.6
-
12
-
-
84906943620
-
Genomic selection: Genome-wide prediction in plant improvement
-
Desta, Z.A., and R. Ortiz. 2014. Genomic selection: Genome-wide prediction in plant improvement. Trends Plant Sci. 19:592-601. doi:10.1016/j. tplants.2014.05.006
-
(2014)
Trends Plant Sci.
, vol.19
, pp. 592-601
-
-
Desta, Z.A.1
Ortiz, R.2
-
13
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire, R.J., J.C. Glaubitz, Q. Sun, J.A. Poland, K. Kawamoto, E.S. Buckler, and S.E. Mitchell. 2011. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6. doi:10.1371/ journal.pone.0019379
-
(2011)
PLoS ONE
, pp. 6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
Buckler, E.S.6
Mitchell, S.E.7
-
14
-
-
85136354327
-
Ridge regression and other kernels for genomic selection with R package rrBLUP
-
Endelman, J.B. 2011. Ridge regression and other kernels for genomic selection with R package rrBLUP. Plant Gen. 4:250-255. doi:10.3835/plantgenome2011.08.0024
-
(2011)
Plant Gen.
, vol.4
, pp. 250-255
-
-
Endelman, J.B.1
-
15
-
-
84907916544
-
Fast and cost-effective genetic mapping in apple using next-generation sequencing
-
Gardner, K.M., P. Brown, T.F. Cooke, S. Cann, F. Costa, C. Bustamante, R. Velasco, M. Troggio, and S. Myles. 2014. Fast and cost-effective genetic mapping in apple using next-generation sequencing. G3: Genes Genomes Genet. 4:1681-1687. doi:10.1534/g3.114.011023
-
(2014)
G3: Genes Genomes Genet.
, vol.4
, pp. 1681-1687
-
-
Gardner, K.M.1
Brown, P.2
Cooke, T.F.3
Cann, S.4
Costa, F.5
Bustamante, C.6
Velasco, R.7
Troggio, M.8
Myles, S.9
-
16
-
-
0037705665
-
The lowdown on linkage disequilibrium
-
Gaut, B.S., and A.D. Long. 2003. The lowdown on linkage disequilibrium. Plant Cell 15:1502-1506. doi:10.1105/tpc.150730
-
(2003)
Plant Cell
, vol.15
, pp. 1502-1506
-
-
Gaut, B.S.1
Long, A.D.2
-
17
-
-
84896496737
-
TASSEL-GBS: A high capacity genotyping by sequencing analysis pipeline
-
Glaubitz, J.C., T.M. Casstevens, F. Lu, J. Harriman, R.J. Elshire, Q. Sun, and E.S. Buckler. 2014. TASSEL-GBS: A high capacity genotyping by sequencing analysis pipeline. PLoS ONE 9. doi:10.1371/journal. pone.0090346
-
(2014)
PLoS ONE
, pp. 9
-
-
Glaubitz, J.C.1
Casstevens, T.M.2
Lu, F.3
Harriman, J.4
Elshire, R.J.5
Sun, Q.6
Buckler, E.S.7
-
18
-
-
77954078282
-
Increased food and ecosystem security via perennial grains
-
Glover, J.D., J.P. Reganold, L.W. Bell, et al. 2010. Increased food and ecosystem security via perennial grains. Science 328:1638-1639. doi:10.1126/ science.1188761
-
(2010)
Science
, vol.328
, pp. 1638-1639
-
-
Glover, J.D.1
Reganold, J.P.2
Bell, L.W.3
-
19
-
-
84858051043
-
Genome-wide prediction of discrete traits using bayesian regressions and machine learning
-
Gonzalez-Recio, O., and S. Forni. 2011. Genome-wide prediction of discrete traits using bayesian regressions and machine learning. Genet. Sel. Evol. 43. 10. doi:10.1186/1297-9686-43-7
-
(2011)
Genet. Sel. Evol
, vol.43
, pp. 10
-
-
Gonzalez-Recio, O.1
Forni, S.2
-
20
-
-
84928720700
-
Potential of genotyping-by-sequencing for genomic selection in livestock populations
-
Gorjanc, G., M.A. Cleveland, R.D. Houston, and J.M. Hickey. 2015. Potential of genotyping-by-sequencing for genomic selection in livestock populations. Genet. Sel. Evol. 47. doi:10.1186/s12711-015-0102-z
-
(2015)
Genet. Sel. Evol
, pp. 47
-
-
Gorjanc, G.1
Cleveland, M.A.2
Houston, R.D.3
Hickey, J.M.4
-
21
-
-
0028136089
-
Genetic-linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD markers
-
Grattapaglia, D., and R. Sederoff. 1994. Genetic-linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD markers. Genetics 137:1121-1137.
-
(1994)
Genetics
, vol.137
, pp. 1121-1137
-
-
Grattapaglia, D.1
Sederoff, R.2
-
22
-
-
37249083895
-
The impact of genetic relationship information on genome-assisted breeding values
-
Habier, D., R.L. Fernando, and J.C.M. Dekkers. 2007. The impact of genetic relationship information on genome-assisted breeding values. Genetics 177:2389-2397. doi:10.1534/genetics.107.081190.
-
(2007)
Genetics
, vol.177
, pp. 2389-2397
-
-
Habier, D.1
Fernando, R.L.2
Dekkers, J.C.M.3
-
23
-
-
84923702477
-
Cool-season grass biomass in the southern mixed-grass prairie region of the USA
-
Harmoney, K.R. 2015. Cool-season grass biomass in the southern mixed-grass prairie region of the USA. Bioenergy Res. 8:203-210. doi:10.1007/s12155-014-9514-9
-
(2015)
Bioenergy Res.
, vol.8
, pp. 203-210
-
-
Harmoney, K.R.1
-
24
-
-
59349098163
-
Invited review: Genomic selection in dairy cattle: Progress and challenges
-
Hayes, B.J., P.J. Bowman, A.J. Chamberlain, and M.E. Goddard. 2009. Invited review: Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 92:433-443. doi:10.3168/jds.2008-1646
-
(2009)
J. Dairy Sci.
, vol.92
, pp. 433-443
-
-
Hayes, B.J.1
Bowman, P.J.2
Chamberlain, A.J.3
Goddard, M.E.4
-
25
-
-
80053633450
-
Genomic selection accuracy for grain quality traits in biparental wheat populations
-
Heffner, E.L., J.L. Jannink, H. Iwata, E. Souza, and M.E. Sorrells. 2011a. Genomic selection accuracy for grain quality traits in biparental wheat populations. Crop Sci. 51:2597-2606. doi:10.2135/cropsci2011.05.0253
-
(2011)
Crop Sci.
, vol.51
, pp. 2597-2606
-
-
Heffner, E.L.1
Jannink, J.L.2
Iwata, H.3
Souza, E.4
Sorrells, M.E.5
-
26
-
-
85167520539
-
Genomic selection accuracy using multifamily prediction models in a wheat breeding program
-
Heffner, E.L., J.L. Jannink, and M.E. Sorrells. 2011b. Genomic selection accuracy using multifamily prediction models in a wheat breeding program. Plant Gen. 4:65-75. doi:10.3835/plantgenome.2010.12.0029
-
(2011)
Plant Gen.
, vol.4
, pp. 65-75
-
-
Heffner, E.L.1
Jannink, J.L.2
Sorrells, M.E.3
-
27
-
-
84903122894
-
Evaluation of genomic selection training population designs and genotyping strategies in plant breeding programs using simulation
-
Hickey, J.M., S. Dreisigacker, J. Crossa, S. Hearne, R. Babu, B.M. Prasanna, M. Grondona, A. Zambelli, V.S. Windhausen, K. Mathews, and G. Gorjanc. 2014. Evaluation of genomic selection training population designs and genotyping strategies in plant breeding programs using simulation. Crop Sci. 54:1476-1488. doi:10.2135/cropsci2013.03.0195
-
(2014)
Crop Sci.
, vol.54
, pp. 1476-1488
-
-
Hickey, J.M.1
Dreisigacker, S.2
Crossa, J.3
Hearne, S.4
Babu, R.5
Prasanna, B.M.6
Grondona, M.7
Zambelli, A.8
Windhausen, V.S.9
Mathews, K.10
Gorjanc, G.11
-
28
-
-
0023959349
-
Variances and covariances of squared linkage disequilibria in finite populations
-
Hill, W.G., and B.S. Weir. 1988. Variances and covariances of squared linkage disequilibria in finite populations. Theor. Popul. Biol. 33:54-78. doi:10.1016/0040-5809(88)90004-4
-
(1988)
Theor. Popul. Biol.
, vol.33
, pp. 54-78
-
-
Hill, W.G.1
Weir, B.S.2
-
29
-
-
84904581077
-
Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat
-
Huang, Y.F., J.A. Poland, C.P. Wight, E.W. Jackson, and N.A. Tinker. 2014. Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat. PLoS ONE 9. doi:10.1371/annotation/c85feb29-046d- 45f6-ba12-510f9e1d9412
-
(2014)
PLoS ONE
, pp. 9
-
-
Huang, Y.F.1
Poland, J.A.2
Wight, C.P.3
Jackson, E.W.4
Tinker, N.A.5
-
30
-
-
84938913766
-
Association mapping of QTLs for Sclerotinia stem rot resistance in a collection of soybean plant introductions using a genotyping by sequencing (GBS) approach
-
Iquira, E., S. Humira, and B. Francois. 2015. Association mapping of QTLs for Sclerotinia stem rot resistance in a collection of soybean plant introductions using a genotyping by sequencing (GBS) approach. BMC Plant Biol. 15. doi:10.1186/s12870-014-0408-y
-
(2015)
BMC Plant Biol
, pp. 15
-
-
Iquira, E.1
Humira, S.2
Francois, B.3
-
31
-
-
77951987956
-
Genomic selection in plant breeding: From theory to practice
-
Jannink, J.L., A.J. Lorenz, and H. Iwata. 2010. Genomic selection in plant breeding: From theory to practice. Briefings in functional genomics 9:166-177. doi:10.1093/bfgp/elq001
-
(2010)
Briefings in functional genomics
, vol.9
, pp. 166-177
-
-
Jannink, J.L.1
Lorenz, A.J.2
Iwata, H.3
-
32
-
-
84875898037
-
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
-
Jia, J.Z., S.C. Zhao, X.Y. Kong, et al. 2013. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496:91-95. doi:10.1038/nature12028
-
(2013)
Nature
, vol.496
, pp. 91-95
-
-
Jia, J.Z.1
Zhao, S.C.2
Kong, X.Y.3
-
33
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M., J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, S.J. Jones, and M.A. Marra. 2009. Circos: An information aesthetic for comparative genomics. Genome Res. 19:1639-1645. doi:10.1101/ gr.092759.109
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
34
-
-
84860503096
-
Genomic selection for fruit quality traits in apple (Malus domestica Borkh.)
-
Kumar, S., D. Chagne, M. Bink, R.K. Volz, C. Whitworth, and C. Carlisle. 2012. Genomic selection for fruit quality traits in apple (Malus domestica Borkh.). PLoS ONE 7. doi:10.1371/journal.pone.0036674.
-
(2012)
PLoS ONE
, pp. 7
-
-
Kumar, S.1
Chagne, D.2
Bink, M.3
Volz, R.K.4
Whitworth, C.5
Carlisle, C.6
-
35
-
-
84903188591
-
Genomewide prediction accuracy within 969 maize biparental populations
-
Lian, L., A. Jacobson, S.Q. Zhong, and R. Bernardo. 2014. Genomewide prediction accuracy within 969 maize biparental populations. Crop Sci. 54:1514-1522. doi:10.2135/cropsci2013.12.0856
-
(2014)
Crop Sci.
, vol.54
, pp. 1514-1522
-
-
Lian, L.1
Jacobson, A.2
Zhong, S.Q.3
Bernardo, R.4
-
36
-
-
84928681071
-
Prediction of genetic variance in biparental maize populations: Genomewide marker effects versus mean genetic variance in prior populations
-
Lian, L., A. Jacobson, S.Q. Zhong, and R. Bernardo. 2015. Prediction of genetic variance in biparental maize populations: Genomewide marker effects versus mean genetic variance in prior populations. Crop Sci. 55:1181-1188. doi:10.2135/cropsci2014.10.0729
-
(2015)
Crop Sci.
, vol.55
, pp. 1181-1188
-
-
Lian, L.1
Jacobson, A.2
Zhong, S.Q.3
Bernardo, R.4
-
37
-
-
84908696141
-
Genomic selection in crops, trees and forages: A review
-
Lin, Z., B.J. Hayes, and H.D. Daetwyler. 2014. Genomic selection in crops, trees and forages: A review. Crop Pasture Sci. 65:1177-1191. doi:10.1071/CP13363
-
(2014)
Crop Pasture Sci.
, vol.65
, pp. 1177-1191
-
-
Lin, Z.1
Hayes, B.J.2
Daetwyler, H.D.3
-
38
-
-
84911486846
-
Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches
-
Lipka, A.E., F. Lu, J.H. Cherney, E.S. Buckler, M.D. Casler, and D.E. Costich. 2014. Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches. PLoS ONE 9. doi:10.1371/journal.pone.0112227
-
(2014)
PLoS ONE
, pp. 9
-
-
Lipka, A.E.1
Lu, F.2
Cherney, J.H.3
Buckler, E.S.4
Casler, M.D.5
Costich, D.E.6
-
39
-
-
78651492289
-
Genomic selection in plant breeding: Knowledge and prospects
-
Lorenz, A.J., S.M. Chao, F.G. Asoro, E.L. Heffner, T. Hayashi, H. Iwata, K.P. Smith, M.E. Sorrells, and J.L. Jannink. 2011. Genomic selection in plant breeding: Knowledge and prospects. Adv. Agron. 110:77-123.
-
(2011)
Adv. Agron.
, vol.110
, pp. 77-123
-
-
Lorenz, A.J.1
Chao, S.M.2
Asoro, F.G.3
Heffner, E.L.4
Hayashi, T.5
Iwata, H.6
Smith, K.P.7
Sorrells, M.E.8
Jannink, J.L.9
-
40
-
-
84873505245
-
Switchgrass genomic diversity, ploidy, and evolution: Novel insights from a network-based SNP discovery protocol
-
Lu, F., A.E. Lipka, J. Glaubitz, R. Elshire, J.H. Cherney, M.D. Casler, E.S. Buckler, and D.E. Costich. 2013. Switchgrass genomic diversity, ploidy, and evolution: Novel insights from a network-based SNP discovery protocol. PLoS Genet. 9. doi:10.1371/journal.pgen.1003215
-
(2013)
PLoS Genet
, pp. 9
-
-
Lu, F.1
Lipka, A.E.2
Glaubitz, J.3
Elshire, R.4
Cherney, J.H.5
Casler, M.D.6
Buckler, E.S.7
Costich, D.E.8
-
41
-
-
79955974153
-
On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermedium: Poaceae, Triticeae)
-
Mahelka, V., D. Kopecky, and L. Pastova. 2011. On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermedium: Poaceae, Triticeae). BMC Evol. Biol. 11. doi:10.1186/1471-2148-11-127
-
(2011)
BMC Evol. Biol
, pp. 11
-
-
Mahelka, V.1
Kopecky, D.2
Pastova, L.3
-
42
-
-
84870265846
-
A physical, genetic and functional sequence assembly of the barley genome
-
Mayer, K.F.X., R. Waugh, P. Langridge, et al. 2012. A physical, genetic and functional sequence assembly of the barley genome. Nature 491:711- 716. doi:10.1038/nature11543
-
(2012)
Nature
, vol.491
, pp. 711-716
-
-
Mayer, K.F.X.1
Waugh, R.2
Langridge, P.3
-
43
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen, T.H.E., B.J. Hayes, and M.E. Goddard. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819-1829.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
44
-
-
84938075741
-
Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R, Br., using a genotyping-bysequencing (GBS) approach
-
Moumouni, K.H., B.A. Kountche, M. Jean, C.T. Hash, Y. Vigouroux, B.I.G. Haussmann, and F. Belzile. 2015. Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-bysequencing (GBS) approach. Mol. Breed. 35. doi:10.1007/s11032-015- 0212-x
-
(2015)
Mol. Breed
, pp. 35
-
-
Moumouni, K.H.1
Kountche, B.A.2
Jean, M.3
Hash, C.T.4
Vigouroux, Y.5
Haussmann, B.I.G.6
Belzile, F.7
-
45
-
-
84879006962
-
-
Software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen, the Netherlands
-
Van Ooijen, J.W. 2006. JoinMap 4. Software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen, the Netherlands.
-
(2006)
JoinMap 4
-
-
Van Ooijen, J.W.1
-
46
-
-
84959341280
-
-
New features. Kyazma BV, Wageningen, the Netherlands
-
Van Ooijen, J.W. 2011a. JoinMap 4.1. New features. Kyazma BV, Wageningen, the Netherlands.
-
(2011)
JoinMap 4.1
-
-
Van Ooijen, J.W.1
-
47
-
-
80054890337
-
Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
-
Van Ooijen, J.W. 2011b. Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. Genet. Res. 93:343-349. doi:10.1017/S0016672311000279
-
(2011)
Genet. Res.
, vol.93
, pp. 343-349
-
-
Van Ooijen, J.W.1
-
48
-
-
84871650162
-
Exploring the genetic characteristics of two recombinant inbred line populations via high-density SNP markers in maize
-
Pan, Q.C., F. Ali, X.H. Yang, J.S. Li, and J.B. Yan. 2012. Exploring the genetic characteristics of two recombinant inbred line populations via high-density SNP markers in maize. PLoS ONE 7. doi:10.1371/journal. pone.0052777
-
(2012)
PLoS ONE
, pp. 7
-
-
Pan, Q.C.1
Ali, F.2
Yang, X.H.3
Li, J.S.4
Yan, J.B.5
-
49
-
-
44449151445
-
High-density genetic map of durum wheat wild emmer wheat based on SSR and DArT markers
-
Peleg, Z., Y. Saranga, T. Suprunova, Y. Ronin, M.S. Roder, A. Kilian, A.B. Korol, and T. Fahima. 2008. High-density genetic map of durum wheat wild emmer wheat based on SSR and DArT markers. Theor. Appl. Genet. 117:103-115. doi:10.1007/s00122-008-0756-9
-
(2008)
Theor. Appl. Genet.
, vol.117
, pp. 103-115
-
-
Peleg, Z.1
Saranga, Y.2
Suprunova, T.3
Ronin, Y.4
Roder, M.S.5
Kilian, A.6
Korol, A.B.7
Fahima, T.8
-
50
-
-
84907997062
-
Genome-wide regression and prediction with the BGLR statistical package
-
Perez, P., and G. de los Campos. 2014. Genome-wide regression and prediction with the BGLR statistical package. Genetics 198:483-495. doi:10.1534/genetics.114.164442
-
(2014)
Genetics
, vol.198
, pp. 483-495
-
-
Perez, P.1
de los Campos, G.2
-
51
-
-
84857520461
-
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
-
Poland, J.A., P.J. Brown, M.E. Sorrells, and J.L. Jannink. 2012. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS ONE 7. doi:10.1371/journal.pone.0032253
-
(2012)
PLoS ONE
, pp. 7
-
-
Poland, J.A.1
Brown, P.J.2
Sorrells, M.E.3
Jannink, J.L.4
-
52
-
-
84875444971
-
Genotyping-by-sequencing for plant breeding and genetics
-
Poland, J.A., and T.W. Rife. 2012. Genotyping-by-sequencing for plant breeding and genetics. Plant Gen. 5:92-102. doi:10.3835/plantgenome2012.05.0005
-
(2012)
Plant Gen.
, vol.5
, pp. 92-102
-
-
Poland, J.A.1
Rife, T.W.2
-
53
-
-
84863304598
-
-
(verified 20 Nov. 2015). The R Foundation, Vienna, Austria
-
R Core Team. 2014. R: A language and environment for statistical computing. Available at http://www.R-project.org/ (verified 20 Nov. 2015). The R Foundation, Vienna, Austria.
-
(2014)
R: A language and environment for statistical computing
-
-
-
54
-
-
0034665720
-
Greenhouse gases in intensive agriculture: Contributions of individual gases to the radiative forcing of the atmosphere
-
Robertson, G.P., E.A. Paul, and R.R. Harwood. 2000. Greenhouse gases in intensive agriculture: Contributions of individual gases to the radiative forcing of the atmosphere. Science 289:1922-1925. doi:10.1126/ science.289.5486.1922
-
(2000)
Science
, vol.289
, pp. 1922-1925
-
-
Robertson, G.P.1
Paul, E.A.2
Harwood, R.R.3
-
55
-
-
84896392193
-
The use of genotyping by sequencing in blackcurrant (Ribes nigrum): Developing high-resolution linkage maps in species without reference genome sequences
-
Russell, J., C. Hackett, P. Hedley, H. Liu, L. Milne, M. Bayer, D. Marshall, L. Jorgensen, S. Gordon, and R. Brennan. 2014. The use of genotyping by sequencing in blackcurrant (Ribes nigrum): Developing high-resolution linkage maps in species without reference genome sequences. Mol. Breed. 33:835-849. doi:10.1007/s11032-013-9996-8
-
(2014)
Mol. Breed.
, vol.33
, pp. 835-849
-
-
Russell, J.1
Hackett, C.2
Hedley, P.3
Liu, H.4
Milne, L.5
Bayer, M.6
Marshall, D.7
Jorgensen, L.8
Gordon, S.9
Brennan, R.10
-
56
-
-
84883302611
-
Imputation of unordered markers and the impact on genomic selection accuracy
-
Rutkoski, J.E., J. Poland, J.L. Jannink, and M.E. Sorrells. 2013. Imputation of unordered markers and the impact on genomic selection accuracy. G3: Genes Genomes Genet. 3:427-439. doi:10.1534/g3.112.005363
-
(2013)
G3: Genes Genomes Genet.
, vol.3
, pp. 427-439
-
-
Rutkoski, J.E.1
Poland, J.2
Jannink, J.L.3
Sorrells, M.E.4
-
57
-
-
84908402747
-
Genomic selection for quantitative adult plant stem rust resistance in wheat
-
Rutkoski, J.E., J.A. Poland, R.P. Singh, J. Huerta-Espino, S. Bhavani, H. Barbier, M.N. Rouse, J.L. Jannink, and M.E. Sorrells. 2014. Genomic selection for quantitative adult plant stem rust resistance in wheat. Plant Gen. 7. doi:10.3835/plantgenome2014.02.0006
-
(2014)
Plant Gen
, pp. 7
-
-
Rutkoski, J.E.1
Poland, J.A.2
Singh, R.P.3
Huerta-Espino, J.4
Bhavani, S.5
Barbier, H.6
Rouse, M.N.7
Jannink, J.L.8
Sorrells, M.E.9
-
58
-
-
84925954982
-
Assessing genomic selection prediction accuracy in a dynamic barley breeding population
-
Sallam, A.H., J.B. Endelman, J.-L. Jannink, and K.P. Smith. 2015. Assessing genomic selection prediction accuracy in a dynamic barley breeding population. Plant Gen. 8. doi:10.3835/plantgenome2014.05.0020
-
(2015)
Plant Gen
, pp. 8
-
-
Sallam, A.H.1
Endelman, J.B.2
Jannink, J.-L.3
Smith, K.P.4
-
60
-
-
84924428504
-
Genomic selection and association mapping in rice (Oryza sativa): Effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines
-
Spindel, J., H. Begum, D. Akdemir, P. Virk, B. Collard, E. Redoña, G. Atlin, J.L. Jannink, and S.R. McCouch. 2015. Genomic selection and association mapping in rice (Oryza sativa): Effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines. PLoS Genet. 11:e1004982. doi:10.1371/journal. pgen.1004982
-
(2015)
PLoS Genet.
, vol.11
-
-
Spindel, J.1
Begum, H.2
Akdemir, D.3
Virk, P.4
Collard, B.5
Redoña, E.6
Atlin, G.7
Jannink, J.L.8
McCouch, S.R.9
-
61
-
-
84908429193
-
Novel methods to optimize genotypic imputation for low-coverage, next-generation sequence data in crop plants
-
Swarts, K., H.H. Li, J.A.R. Navarro, D. An, M.C. Romay, S. Hearne, C. Acharya, J.C. Glaubitz, S. Mitchell, R.J. Elshire, E.S. Buckler, and P.J. Bradbury. 2014. Novel methods to optimize genotypic imputation for low-coverage, next-generation sequence data in crop plants. Plant Gen. 7. doi:10.3835/plantgenome2014.05.0023
-
(2014)
Plant Gen
, pp. 7
-
-
Swarts, K.1
Li, H.H.2
Navarro, J.A.R.3
An, D.4
Romay, M.C.5
Hearne, S.6
Acharya, C.7
Glaubitz, J.C.8
Mitchell, S.9
Elshire, R.J.10
Buckler, E.S.11
Bradbury, P.J.12
-
62
-
-
17444400925
-
Estimation of long-term effective population sizes through the history of durum wheat using microsatellite data
-
Thuillet, A.C., T. Bataillon, S. Poirier, S. Santoni, and J.L. David. 2005. Estimation of long-term effective population sizes through the history of durum wheat using microsatellite data. Genetics 169:1589-1599. doi:10.1534/genetics.104.029553
-
(2005)
Genetics
, vol.169
, pp. 1589-1599
-
-
Thuillet, A.C.1
Bataillon, T.2
Poirier, S.3
Santoni, S.4
David, J.L.5
-
63
-
-
77949647346
-
LASSO with crossvalidation for genomic selection
-
Usai, M.G., M.E. Goddard, and B.J. Hayes. 2009. LASSO with crossvalidation for genomic selection. Genet. Res. 91:427-436. doi:10.1017/ S0016672309990334
-
(2009)
Genet. Res.
, vol.91
, pp. 427-436
-
-
Usai, M.G.1
Goddard, M.E.2
Hayes, B.J.3
-
64
-
-
84876439419
-
Comparison of two perennial grass breeding systems with switchgrass
-
Vogel, K.P. 2013. Comparison of two perennial grass breeding systems with switchgrass. Crop Sci. 53:863-870. doi:10.2135/cropsci2012.09.0559
-
(2013)
Crop Sci.
, vol.53
, pp. 863-870
-
-
Vogel, K.P.1
-
65
-
-
0036256695
-
MapChart: Software for the graphical presentation of linkage maps and QTLs
-
Voorrips, R.E. 2002. MapChart: Software for the graphical presentation of linkage maps and QTLs. J. Hered. 93:77-78. doi:10.1093/jhered/93.1.77
-
(2002)
J. Hered.
, vol.93
, pp. 77-78
-
-
Voorrips, R.E.1
-
66
-
-
0001782676
-
Perennial grain: New use for intermediate wheatgrass
-
Wagoner, P. 1990. Perennial grain: New use for intermediate wheatgrass. J. Soil Water Conserv. 45:81-82.
-
(1990)
J. Soil Water Conserv.
, vol.45
, pp. 81-82
-
-
Wagoner, P.1
-
67
-
-
84921409258
-
The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years
-
Wang, Y., M.F. Mette, T. Miedaner, M. Gottwald, P. Wilde, J.C. Reif, and Y.S. Zhao. 2014. The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years. BMC Genomics 15. doi:10.1186/1471-2164-15-556.
-
(2014)
BMC Genomics
, pp. 15
-
-
Wang, Y.1
Mette, M.F.2
Miedaner, T.3
Gottwald, M.4
Wilde, P.5
Reif, J.C.6
Zhao, Y.S.7
-
68
-
-
84876393058
-
The effect of linkage disequilibrium and family relationships on the reliability of genomic prediction
-
Wientjes, Y.C.J., R.F. Veerkamp, and M.P.L. Calus. 2013. The effect of linkage disequilibrium and family relationships on the reliability of genomic prediction. Genetics 193:621-631. doi:10.1534/genetics. 112.146290
-
(2013)
Genetics
, vol.193
, pp. 621-631
-
-
Wientjes, Y.C.J.1
Veerkamp, R.F.2
Calus, M.P.L.3
-
69
-
-
84883177912
-
Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments
-
Windhausen, V.S., G.N. Atlin, J.M. Hickey, J. Crossa, J.L. Jannink, M.E. Sorrells, B. Raman, J.E. Cairns, A. Tarekegne, K. Semagn, Y. Beyene, P. Grudloyma, F. Technow, C. Riedelsheimer, and A.E. Melchinger. 2012. Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments. G3: Genes Genomes Genet. 2:1427-1436. doi:10.1534/g3.112.003699
-
(2012)
G3: Genes Genomes Genet.
, vol.2
, pp. 1427-1436
-
-
Windhausen, V.S.1
Atlin, G.N.2
Hickey, J.M.3
Crossa, J.4
Jannink, J.L.5
Sorrells, M.E.6
Raman, B.7
Cairns, J.E.8
Tarekegne, A.9
Semagn, K.10
Beyene, Y.11
Grudloyma, P.12
Technow, F.13
Riedelsheimer, C.14
Melchinger, A.E.15
-
70
-
-
84884169493
-
Genomic selection in sugar beet breeding populations
-
Wurschum, T., J.C. Reif, T. Kraft, G. Janssen, and Y.S. Zhao. 2013. Genomic selection in sugar beet breeding populations. BMC Genet. 14. doi:10.1186/1471-2156-14-85
-
(2013)
BMC Genet
, pp. 14
-
-
Wurschum, T.1
Reif, J.C.2
Kraft, T.3
Janssen, G.4
Zhao, Y.S.5
-
71
-
-
84894313250
-
New insights into high-molecular-weight glutenin subunits and sub-genomes of the perennial crop Thinopyrum intermedium (Triticeae)
-
Zhang, X.F., L.R. DeHaan, L. Higgins, T.W. Markowski, D.L. Wyse, and J.A. Anderson. 2014. New insights into high-molecular-weight glutenin subunits and sub-genomes of the perennial crop Thinopyrum intermedium (Triticeae). J. Cereal Sci. 59:203-210. doi:10.1016/j. jcs.2014.01.008
-
(2014)
J. Cereal Sci.
, vol.59
, pp. 203-210
-
-
Zhang, X.F.1
DeHaan, L.R.2
Higgins, L.3
Markowski, T.W.4
Wyse, D.L.5
Anderson, J.A.6
-
72
-
-
84861792509
-
Accuracy of genomic selection in European maize elite breeding populations
-
Zhao, Y.S., M. Gowda, W.X. Liu, T. Wurschum, H.P. Maurer, F.H. Longin, N. Ranc, and J. Reif. 2012. Accuracy of genomic selection in European maize elite breeding populations. Theor. Appl. Genet. 124:769-776. doi:10.1007/s00122-011-1745-y
-
(2012)
Theor. Appl. Genet.
, vol.124
, pp. 769-776
-
-
Zhao, Y.S.1
Gowda, M.2
Liu, W.X.3
Wurschum, T.4
Maurer, H.P.5
Longin, F.H.6
Ranc, N.7
Reif, J.8
|