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Volumn 54, Issue 4, 2014, Pages 1514-1522

Genomewide prediction accuracy within 969 maize biparental populations

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EID: 84903188591     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2013.12.0856     Document Type: Article
Times cited : (76)

References (32)
  • 2
    • 2642592166 scopus 로고
    • Retrospective index weights used in multiple trait selection in a maize breeding program
    • doi:10.2135/cropsci1991. 0011183X003100050020x
    • Bernardo, R. 1991. Retrospective index weights used in multiple trait selection in a maize breeding program. Crop Sci. 31:1174-1179. doi:10.2135/cropsci1991. 0011183X003100050020x.
    • (1991) Crop Sci. , vol.31 , pp. 1174-1179
    • Bernardo, R.1
  • 3
    • 63149172767 scopus 로고    scopus 로고
    • Genomewide selection for rapid introgression of exotic germplasm in maize
    • doi:10.2135/cropsci2008.08.0452
    • Bernardo, R. 2009. Genomewide selection for rapid introgression of exotic germplasm in maize. Crop Sci. 49:419-425. doi:10.2135/cropsci2008.08.0452
    • (2009) Crop Sci. , vol.49 , pp. 419-425
    • Bernardo, R.1
  • 4
    • 34548176501 scopus 로고    scopus 로고
    • Prospects for genomewide selection for quantitative traits in maize
    • doi:10.2135/cropsci2006.11.0690
    • Bernardo, R., and J.M. Yu. 2007. Prospects for genomewide selection for quantitative traits in maize. Crop Sci. 47:1082-1090 doi:10.2135/cropsci2006.11.0690
    • (2007) Crop Sci. , vol.47 , pp. 1082-1090
    • Bernardo, R.1    Yu, J.M.2
  • 6
    • 84884358531 scopus 로고    scopus 로고
    • Accuracy of genomewide selection for different traits with constant population size, heritability, and number of markers
    • doi:10.3835/plantgenome2012.11.0030
    • Combs, E., and R. Bernardo. 2013a. Accuracy of genomewide selection for different traits with constant population size, heritability, and number of markers. Plant Gen. 6. doi:10.3835/plantgenome2012.11.0030
    • (2013) Plant Gen. , pp. 6
    • Combs, E.1    Bernardo, R.2
  • 7
    • 84878763718 scopus 로고    scopus 로고
    • Genomewide selection to introgress semidwarf corn germplasm into U.S. Corn Belt inbreds
    • doi:10.2135/cropsci2012.11.0666
    • Combs, E., and R. Bernardo. 2013b. Genomewide selection to introgress semidwarf corn germplasm into U.S. Corn Belt inbreds. Crop Sci. 53:1427-1435. doi:10.2135/cropsci2012.11.0666
    • (2013) Crop Sci. , vol.53 , pp. 1427-1435
    • Combs, E.1    Bernardo, R.2
  • 9
    • 54449097329 scopus 로고    scopus 로고
    • Accuracy of predicting the genetic risk of disease using a genome-wide approach
    • doi:10.1371/journal.pone.0003395
    • Daetwyler, H.D., B. Villanueva, and J.A. Woolliams. 2008. Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS ONE 3:e3395. doi:10.1371/journal.pone.0003395
    • (2008) PLoS ONE , vol.3
    • Daetwyler, H.D.1    Villanueva, B.2    Woolliams, J.A.3
  • 10
    • 36849039475 scopus 로고    scopus 로고
    • Prediction of response to marker-assisted and genomic selection using selection index theory
    • doi:10.1111/j.1439-0388.2007.00701.x
    • Dekkers, J. 2007. Prediction of response to marker-assisted and genomic selection using selection index theory. J. Anim. Breed. Genet. 124:331-341. doi:10.1111/j.1439-0388.2007.00701.x
    • (2007) J. Anim. Breed. Genet. , vol.124 , pp. 331-341
    • Dekkers, J.1
  • 11
    • 67349287476 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximisation of long term response
    • doi:10.1007/s10709-008-9308-0
    • Goddard, M. 2009. Genomic selection: Prediction of accuracy and maximisation of long term response. Genetica (The Hague) 136:245-257. doi:10.1007/s10709-008-9308-0
    • (2009) Genetica (The Hague) , vol.136 , pp. 245-257
    • Goddard, M.1
  • 12
    • 0002401719 scopus 로고
    • Methods used in developing maize inbreds
    • Hallauer, A. 1990. Methods used in developing maize inbreds. Maydica 35:1-16.
    • (1990) Maydica , vol.35 , pp. 1-16
    • Hallauer, A.1
  • 13
    • 59349098163 scopus 로고    scopus 로고
    • Invited review: Genomic selection in dairy cattle: Progress and challenges
    • doi:10.3168/jds.2008-1646
    • Hayes, B., P. Bowman, A. Chamberlain, and M. Goddard. 2009. Invited review: Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 92:433-443. doi:10.3168/jds.2008-1646.
    • (2009) J. Dairy Sci. , vol.92 , pp. 433-443
    • Hayes, B.1    Bowman, P.2    Chamberlain, A.3    Goddard, M.4
  • 14
    • 78650127985 scopus 로고    scopus 로고
    • Plant breeding with genomic selection: Gain per unit time and cost
    • doi:10.2135/cropsci2009.11.0662
    • Heffner, E.L., A.J. Lorenz, J.-L. Jannink, and M.E. Sorrells. 2010. Plant breeding with genomic selection: Gain per unit time and cost. Crop Sci. 50:1681-1690. doi:10.2135/cropsci2009.11.0662
    • (2010) Crop Sci. , vol.50 , pp. 1681-1690
    • Heffner, E.L.1    Lorenz, A.J.2    Jannink, J.-L.3    Sorrells, M.E.4
  • 15
    • 0037734547 scopus 로고    scopus 로고
    • Estimating and interpreting heritability for plant breeding: An update
    • doi:10.1002/9780470650202.ch2
    • Holland, J.B., W.E. Nyquist, and C.T. Cervantes-Martínez. 2003. Estimating and interpreting heritability for plant breeding: An update. Plant Breed. Rev. 22:9-112. doi:10.1002/9780470650202.ch2.
    • (2003) Plant Breed. Rev. , vol.22 , pp. 9-112
    • Holland, J.B.1    Nyquist, W.E.2    Cervantes-Martínez, C.T.3
  • 16
    • 84898447796 scopus 로고    scopus 로고
    • General combining ability model for genomewide selection in a biparental cross
    • doi:10.2135/cropsci2013.11.0774 (in press)
    • Jacobson, A., L. Lian, S. Zhong, and R. Bernardo. 2014. General combining ability model for genomewide selection in a biparental cross. Crop Sci. doi:10.2135/cropsci2013.11.0774 (in press).
    • (2014) Crop Sci.
    • Jacobson, A.1    Lian, L.2    Zhong, S.3    Bernardo, R.4
  • 17
    • 85164392958 scopus 로고
    • A study of cross-validation and bootstrap for accuracy estimation and model selection
    • In: Montreal, Quebec, Canada. 20-25 Aug. American Association for Artificial Intelligence, Montreal
    • Kohavi, R. 1995. A study of cross-validation and bootstrap for accuracy estimation and model selection. In: International joint conference on artificial intelligence, Montreal, Quebec, Canada. 20-25 Aug. American Association for Artificial Intelligence, Montreal. p. 1137-1145.
    • (1995) International joint conference on artificial intelligence , pp. 1137-1145
    • Kohavi, R.1
  • 18
    • 30744434862 scopus 로고    scopus 로고
    • Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
    • doi:10.1038/sj.hdy.6800717
    • Li, J., and L. Ji. 2005. Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity 95:221-227. doi:10.1038/sj.hdy.6800717
    • (2005) Heredity , vol.95 , pp. 221-227
    • Li, J.1    Ji, L.2
  • 19
    • 84883222798 scopus 로고    scopus 로고
    • Resource allocation for maximizing prediction accuracy and genetic gain of genomic selection in plant breeding: A simulation experiment
    • doi:10.1534/g3.112.004911
    • Lorenz, A.J. 2013. Resource allocation for maximizing prediction accuracy and genetic gain of genomic selection in plant breeding: A simulation experiment. G3: Genes| Genomes| Genetics 3:481-491. doi:10.1534/g3.112.004911.
    • (2013) G3: Genes| Genomes| Genetics , vol.3 , pp. 481-491
    • Lorenz, A.J.1
  • 20
    • 70949108214 scopus 로고    scopus 로고
    • Accuracy of genotypic value predictions for marker-based selection in biparental plant populations
    • doi:10.1007/s00122-009-1166-3
    • Lorenzana, R.E., and R. Bernardo. 2009. Accuracy of genotypic value predictions for marker-based selection in biparental plant populations. Theor. Appl. Genet. 120:151-161. doi:10.1007/s00122-009-1166-3
    • (2009) Theor. Appl. Genet. , vol.120 , pp. 151-161
    • Lorenzana, R.E.1    Bernardo, R.2
  • 23
    • 84872203377 scopus 로고    scopus 로고
    • Genomewide selection versus marker-assisted recurrent selection to improve grain yield and stover-quality traits for cellulosic ethanol in maize
    • doi:10.2135/cropsci2012.02.0112
    • Massman, J.M., H.-J.G. Jung, and R. Bernardo. 2013. Genomewide selection versus marker-assisted recurrent selection to improve grain yield and stover-quality traits for cellulosic ethanol in maize. Crop Sci. 53:58-66. doi:10.2135/cropsci2012.02.0112
    • (2013) Crop Sci. , vol.53 , pp. 58-66
    • Massman, J.M.1    Jung, H.-J.G.2    Bernardo, R.3
  • 24
    • 77955482663 scopus 로고    scopus 로고
    • Accurate prediction of genetic values for complex traits by whole-genome resequencing
    • doi:10.1534/genetics.110.116590
    • Meuwissen, T., and M. Goddard. 2010. Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 185:623-631. doi:10.1534/genetics.110.116590
    • (2010) Genetics , vol.185 , pp. 623-631
    • Meuwissen, T.1    Goddard, M.2
  • 25
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen, T.H., B.J. Hayes, and M.E. Goddard. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.1    Hayes, B.J.2    Goddard, M.E.3
  • 26
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. 2012. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2012) R: A language and environment for statistical computing.
  • 27
    • 84856283792 scopus 로고    scopus 로고
    • Genomic and metabolic prediction of complex heterotic traits in hybrid maize
    • doi:10.1038/ng.1033
    • Riedelsheimer, C., A. Czedik-Eysenberg, C. Grieder, J. Lisec, F. Technow, R. Sulpice, et al. 2012. Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat. Genet. 44:217-220. doi:10.1038/ng.1033
    • (2012) Nat. Genet. , vol.44 , pp. 217-220
    • Riedelsheimer, C.1    Czedik-Eysenberg, A.2    Grieder, C.3    Lisec, J.4    Technow, F.5    Sulpice, R.6
  • 28
    • 84878617144 scopus 로고    scopus 로고
    • Genomic predictability of interconnected biparental maize populations
    • doi:10.1534/genetics.113.150227
    • Riedelsheimer, C., J.B. Endelman, M. Stange, M.E. Sorrells, J.-L. Jannink, and A.E. Melchinger. 2013. Genomic predictability of interconnected biparental maize populations. Genetics 194:493-503. doi:10.1534/genetics.113.150227
    • (2013) Genetics , vol.194 , pp. 493-503
    • Riedelsheimer, C.1    Endelman, J.B.2    Stange, M.3    Sorrells, M.E.4    Jannink, J.-L.5    Melchinger, A.E.6
  • 29
    • 0030497998 scopus 로고    scopus 로고
    • Simple sequence repeat markers developed from maize sequences found in the genbank database: Map construction
    • doi:10.2135/cropsci1996.0011183X003600060043x
    • Senior, M., E. Chin, M. Lee, J. Smith, and C. Stuber. 1996. Simple sequence repeat markers developed from maize sequences found in the genbank database: Map construction. Crop Sci. 36:1676-1683. doi:10.2135/cropsci1996.0011183X003600060043x
    • (1996) Crop Sci. , vol.36 , pp. 1676-1683
    • Senior, M.1    Chin, E.2    Lee, M.3    Smith, J.4    Stuber, C.5
  • 30
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet, P. and M. Stephens. 2006. A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 78:629-644.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 31
    • 45849104624 scopus 로고    scopus 로고
    • Use of doubled haploids in maize breeding: Implications for intellectual property protection and genetic diversity in hybrid crops
    • doi:10.1007/s11032-007-9155-1
    • Smith, J., T. Hussain, E. Jones, G. Graham, D. Podlich, S. Wall, and M. Williams. 2008. Use of doubled haploids in maize breeding: Implications for intellectual property protection and genetic diversity in hybrid crops. Mol. Breed. 22:51-59. doi:10.1007/s11032-007-9155-1
    • (2008) Mol. Breed. , vol.22 , pp. 51-59
    • Smith, J.1    Hussain, T.2    Jones, E.3    Graham, G.4    Podlich, D.5    Wall, S.6    Williams, M.7
  • 32
    • 84883177912 scopus 로고    scopus 로고
    • Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments
    • doi:10.1534/g3.112.003699
    • Windhausen, V.S., G.N. Atlin, J.M. Hickey, J. Crossa, J.-L. Jannink, M.E. Sorrells, et al. 2012. Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments. G3: Genes| Genomes| Genetics 2:1427-1436. doi:10.1534/g3.112.003699
    • (2012) G3: Genes| Genomes| Genetics , vol.2 , pp. 1427-1436
    • Windhausen, V.S.1    Atlin, G.N.2    Hickey, J.M.3    Crossa, J.4    Jannink, J.-L.5    Sorrells, M.E.6


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