메뉴 건너뛰기




Volumn 74, Issue 3, 2016, Pages 1019-1054

Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees

Author keywords

Approximation algorithms; Fixed parameter tractability; Phylogenetics

Indexed keywords

ALGORITHMS; COMPUTATIONAL COMPLEXITY; FORESTRY; GENE TRANSFER; PARAMETER ESTIMATION;

EID: 84959188713     PISSN: 01784617     EISSN: 14320541     Source Type: Journal    
DOI: 10.1007/s00453-015-9983-z     Document Type: Article
Times cited : (12)

References (27)
  • 1
    • 84856082446 scopus 로고    scopus 로고
    • Fast computation of minimum hybridization networks
    • Albrecht, B., Scornavacca, C., Cenci, A., Huson, D.H.: Fast computation of minimum hybridization networks. Bioinformatics 28(2), 191–197 (2012)
    • (2012) Bioinformatics , vol.28 , Issue.2 , pp. 191-197
    • Albrecht, B.1    Scornavacca, C.2    Cenci, A.3    Huson, D.H.4
  • 2
    • 0347512294 scopus 로고    scopus 로고
    • Subtree transfer operations and their induced metrics on evolutionary trees
    • Allen, B.L., Steel, M.: Subtree transfer operations and their induced metrics on evolutionary trees. Ann. Comb. 5(1), 1–15 (2001)
    • (2001) Ann. Comb , vol.5 , Issue.1 , pp. 1-15
    • Allen, B.L.1    Steel, M.2
  • 3
    • 22844448185 scopus 로고    scopus 로고
    • Bounding the number of hybridisation events for a consistent evolutionary history
    • Baroni, M., Grünewald, S., Moulton, V., Semple, C.: Bounding the number of hybridisation events for a consistent evolutionary history. J. Math. Biol. 51(2), 171–182 (2005)
    • (2005) J. Math. Biol , vol.51 , Issue.2 , pp. 171-182
    • Baroni, M.1    Grünewald, S.2    Moulton, V.3    Semple, C.4
  • 4
    • 33645568886 scopus 로고    scopus 로고
    • Phylogenetic identification of lateral genetic transfer events. BMC Evol
    • Beiko, R.G., Hamilton, N.: Phylogenetic identification of lateral genetic transfer events. BMC Evol. Biol. 6(1), 15 (2006)
    • (2006) Biol , vol.6 , Issue.1 , pp. 15
    • Beiko, R.G.1    Hamilton, N.2
  • 5
    • 34547963170 scopus 로고    scopus 로고
    • St. John, K., Mahindru, R., Amenta, N.: Approximating subtree distances between phylogenies
    • Bonet, M.L., St. John, K., Mahindru, R., Amenta, N.: Approximating subtree distances between phylogenies. J. Comput. Biol. 13(8), 1419–1434 (2006)
    • (2006) J. Comput. Biol , vol.13 , Issue.8 , pp. 1419-1434
    • Bonet, M.L.1
  • 6
    • 47549103966 scopus 로고    scopus 로고
    • A 3-approximation algorithm for the subtree distance between phylogenies
    • Bordewich, M., McCartin, C., Semple, C.: A 3-approximation algorithm for the subtree distance between phylogenies. J. Discret. Algorithms 6(3), 458–471 (2008)
    • (2008) J. Discret. Algorithms , vol.6 , Issue.3 , pp. 458-471
    • Bordewich, M.1    McCartin, C.2    Semple, C.3
  • 7
    • 13844266486 scopus 로고    scopus 로고
    • On the computational complexity of the rooted subtree prune and regraft distance
    • Bordewich, M., Semple, C.: On the computational complexity of the rooted subtree prune and regraft distance. Ann. Combin. 8(4), 409–423 (2005)
    • (2005) Ann. Combin , vol.8 , Issue.4 , pp. 409-423
    • Bordewich, M.1    Semple, C.2
  • 8
    • 33947231094 scopus 로고    scopus 로고
    • Computing the minimum number of hybridization events for a consistent evolutionary history
    • Bordewich, M., Semple, C.: Computing the minimum number of hybridization events for a consistent evolutionary history. Discret. Appl. Math. 155(8), 914–928 (2007)
    • (2007) Discret. Appl. Math , vol.155 , Issue.8 , pp. 914-928
    • Bordewich, M.1    Semple, C.2
  • 9
    • 78149247301 scopus 로고    scopus 로고
    • Hybridnet: a tool for constructing hybridization networks
    • Chen, Z.-Z., Wang, L.: Hybridnet: a tool for constructing hybridization networks. Bioinformatics 26(22), 2912–2913 (2010)
    • (2010) Bioinformatics , vol.26 , Issue.22 , pp. 2912-2913
    • Chen, Z.-Z.1    Wang, L.2
  • 10
    • 84863073616 scopus 로고    scopus 로고
    • Algorithms for reticulate networks of multiple phylogenetic trees. IEEE/ACM Trans
    • Chen, Z.-Z., Wang, L.: Algorithms for reticulate networks of multiple phylogenetic trees. IEEE/ACM Trans. Comput. Biol. Bioinform. 9, 372–384 (2012)
    • (2012) Comput. Biol. Bioinform , vol.9 , pp. 372-384
    • Chen, Z.-Z.1    Wang, L.2
  • 12
    • 84872084966 scopus 로고    scopus 로고
    • An ultrafast tool for minimum reticulate networks
    • Chen, Z.-Z., Wang, L.: An ultrafast tool for minimum reticulate networks. J. Comput. Biol. 20(1), 38–41 (2013)
    • (2013) J. Comput. Biol , vol.20 , Issue.1 , pp. 38-41
    • Chen, Z.-Z.1    Wang, L.2
  • 14
    • 0002291589 scopus 로고    scopus 로고
    • On the complexity of comparing evolutionary trees. Discrete Appl
    • Hein, J., Jiang, T., Wang, L., Zhang, K.: On the complexity of comparing evolutionary trees. Discrete Appl. Math. 71(1–3), 153–169 (1996)
    • (1996) Math , vol.71 , Issue.1-3 , pp. 153-169
    • Hein, J.1    Jiang, T.2    Wang, L.3    Zhang, K.4
  • 18
    • 59649101860 scopus 로고    scopus 로고
    • Hybridization in nonbinary trees. IEEE/ACM Trans
    • Linz, S., Semple, C.: Hybridization in nonbinary trees. IEEE/ACM Trans. Comput. Biol. Bioinform. 6, 30–45 (2009)
    • (2009) Comput. Biol. Bioinform , vol.6 , pp. 30-45
    • Linz, S.1    Semple, C.2
  • 19
    • 0024940670 scopus 로고
    • Reconstructing character evolution on polytomous cladograms
    • Maddison, W.: Reconstructing character evolution on polytomous cladograms. Cladistics 5(4), 365–377 (1989)
    • (1989) Cladistics , vol.5 , Issue.4 , pp. 365-377
    • Maddison, W.1
  • 20
    • 33947392953 scopus 로고    scopus 로고
    • The maximum agreement forest problem: approximation algorithms and computational experiments
    • Rodrigues, E.M., Sagot, M.-F., Wakabayashi, Y.: The maximum agreement forest problem: approximation algorithms and computational experiments. Theor. Comput. Sci. 374(1–3), 91–110 (2007)
    • (2007) Theor. Comput. Sci , vol.374 , Issue.1-3 , pp. 91-110
    • Rodrigues, E.M.1    Sagot, M.-F.2    Wakabayashi, Y.3
  • 22
    • 84959195157 scopus 로고    scopus 로고
    • Whidden, C.: RSPR software
    • Whidden, C.: RSPR software. http://kiwi.cs.dal.ca/Software/RSPR
  • 23
    • 84959193467 scopus 로고    scopus 로고
    • Whidden, C.: SPRSupertrees software
    • Whidden, C.: SPRSupertrees software. http://kiwi.cs.dal.ca/Software/SPRSupertrees
  • 25
    • 84884945088 scopus 로고    scopus 로고
    • Fixed-parameter algorithms for maximum agreement forests. SIAM
    • Whidden, C., Beiko, R.G., Zeh, N.: Fixed-parameter algorithms for maximum agreement forests. SIAM J. Comput. 42(4), 1431–1466 (2013)
    • (2013) J. Comput , vol.42 , Issue.4 , pp. 1431-1466
    • Whidden, C.1    Beiko, R.G.2    Zeh, N.3
  • 27
    • 84902492013 scopus 로고    scopus 로고
    • Supertrees based on the subtree prune-and-regraft distance
    • Whidden, C., Zeh, N., Beiko, R.G.: Supertrees based on the subtree prune-and-regraft distance. Syst. Biol. 63(4), 566–581 (2014)
    • (2014) Syst. Biol , vol.63 , Issue.4 , pp. 566-581
    • Whidden, C.1    Zeh, N.2    Beiko, R.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.