-
1
-
-
0347512294
-
Subtree transfer operations and their induced metrics on evolutionary trees
-
B. L. ALLEN and M. STEEL, Subtree transfer operations and their induced metrics on evolutionary trees, Ann. Comb., 5 (2001), pp. 1-15.
-
(2001)
Ann. Comb.
, vol.5
, pp. 1-15
-
-
Allen, B.L.1
Steel, M.2
-
2
-
-
22844448185
-
Bounding the number of hybridisation events for a consistent evolutionary history
-
DOI 10.1007/s00285-005-0315-9
-
M. BARONI, S. GRÜNEWALD, V. MOULTON, and C. SEMPLE, Bounding the number of hybridisation events for a consistent evolutionary history, J. Math. Biol., 51 (2005), pp. 171-182. (Pubitemid 41040209)
-
(2005)
Journal of Mathematical Biology
, vol.51
, Issue.2
, pp. 171-182
-
-
Baroni, M.1
Grunewald, S.2
Moulton, V.3
Semple, C.4
-
3
-
-
33645568886
-
Phylogenetic identification of lateral genetic transfer events
-
R. G. BEIKO and N. HAMILTON, Phylogenetic identification of lateral genetic transfer events, BMC Evolutionary Biol., 6 (2006), p. 15.
-
(2006)
BMC Evolutionary Biol.
, vol.6
, pp. 15
-
-
Beiko, R.G.1
Hamilton, N.2
-
4
-
-
70350648041
-
Efficiently calculating evolutionary tree measures using SAT
-
Lecture Notes in Comput. Sci. 5584, Springer-Verlag, Berlin
-
M. L. BONET and K. ST. JOHN, Efficiently calculating evolutionary tree measures using SAT, in Proceedings of the 12th International Conference on Theory and Applications of Satisfiability Testing, Lecture Notes in Comput. Sci. 5584, Springer-Verlag, Berlin, 2009, pp. 4-17.
-
(2009)
Proceedings of the 12th International Conference on Theory and Applications of Satisfiability Testing
, pp. 4-17
-
-
Bonet, M.L.1
St. John, K.2
-
6
-
-
34547963170
-
Approximating subtree distances between phylogenies
-
M. L. BONET, K. ST. JOHN, R. MAHINDRU, AND N. AMENTA, Approximating subtree distances between phylogenies, J. Comput. Biol., 13 (2006), pp. 1419-1434.
-
(2006)
J. Comput. Biol.
, vol.13
, pp. 1419-1434
-
-
Bonet, M.L.1
St. John, K.2
Mahindru, R.3
Amenta, N.4
-
7
-
-
47549103966
-
A 3-approximation algorithm for the subtree distance between phylogenies
-
M. BORDEWICH, C. MCCARTIN, and C. SEMPLE, A 3-approximation algorithm for the subtree distance between phylogenies, J. Discrete Algorithms, 6 (2008), pp. 458-471.
-
(2008)
J. Discrete Algorithms
, vol.6
, pp. 458-471
-
-
Bordewich, M.1
McCartin, C.2
Semple, C.3
-
8
-
-
13844266486
-
On the computational complexity of the rooted subtree prune and regraft distance
-
DOI 10.1007/s00026-004-0229-z
-
M. BORDEWICH and C. SEMPLE, On the computational complexity of the rooted subtree prune and regraft distance, Ann. Comb., 8 (2005), pp. 409-423. (Pubitemid 40251118)
-
(2005)
Annals of Combinatorics
, vol.8
, Issue.4
, pp. 409-423
-
-
Bordewich, M.1
Semple, C.2
-
9
-
-
34547977053
-
Computing the hybridization number of two phylogenetic trees is fixed-parameter tractable
-
DOI 10.1109/TCBB.2007.1019
-
M. BORDEWICH and C. SEMPLE, Computing the hybridization number of two phylogenetic trees is fixed-parameter tractable, IEEE/ACM Trans. Comput. Biol. Bioinform., 4 (2007), pp. 458-466. (Pubitemid 47274721)
-
(2007)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.4
, Issue.3
, pp. 458-466
-
-
Bordewich, M.1
Semple, C.2
-
10
-
-
33947231094
-
Computing the minimum number of hybridization events for a consistent evolutionary history
-
DOI 10.1016/j.dam.2006.08.008, PII S0166218X06003957
-
M. BORDEWICH and C. SEMPLE, Computing the minimum number of hybridization events for a consistent evolutionary history, Discrete Appl. Math., 155 (2007), pp. 914-928. (Pubitemid 46436152)
-
(2007)
Discrete Applied Mathematics
, vol.155
, Issue.8
, pp. 914-928
-
-
Bordewich, M.1
Semple, C.2
-
11
-
-
12244299880
-
Approximating the Maximum Agreement Forest on k trees
-
DOI 10.1016/j.ipl.2004.11.004, PII S0020019004003345
-
F. CHATAIGNER, Approximating the maximum agreement forest on k trees, Inform. Process. Lett., 93 (2005), pp. 239-244. (Pubitemid 40114670)
-
(2005)
Information Processing Letters
, vol.93
, Issue.5
, pp. 239-244
-
-
Chataigner, F.1
-
12
-
-
84863073616
-
Algorithms for reticulate networks of multiple phylogenetic trees
-
Z.-Z. CHEN and L. WANG, Algorithms for reticulate networks of multiple phylogenetic trees, IEEE/ACM Trans. Comput. Biol. Bioinform., 9 (2012), pp. 372-384.
-
(2012)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.9
, pp. 372-384
-
-
Chen, Z.-Z.1
Wang, L.2
-
13
-
-
0003002776
-
Optimal algorithms for comparing trees with labeled leaves
-
W. H. E. DAY, Optimal algorithms for comparing trees with labeled leaves, J. Classification, 2 (1985), pp. 7-28.
-
(1985)
J. Classification
, vol.2
, pp. 7-28
-
-
Day, W.H.E.1
-
14
-
-
36849021471
-
A faster FPT algorithm for the maximum agreement forest problem
-
M. HALLETT and C. MCCARTIN, A faster FPT algorithm for the maximum agreement forest problem, Theory Comput. Syst., 41 (2007), pp. 539-550.
-
(2007)
Theory Comput. Syst.
, vol.41
, pp. 539-550
-
-
Hallett, M.1
McCartin, C.2
-
16
-
-
0002291589
-
On the complexity of comparing evolutionary trees
-
PII S0166218X96000625
-
J. HEIN, T. JIANG, L. WANG, and K. ZHANG, On the complexity of comparing evolutionary trees, Discrete Appl. Math., 71 (1996), pp. 153-169. (Pubitemid 126391777)
-
(1996)
Discrete Applied Mathematics
, vol.71
, Issue.1-3
, pp. 153-169
-
-
Hein, J.1
Jiang, T.2
Wang, L.3
Zhang, K.4
-
17
-
-
84864560822
-
The computational complexity of the unrooted subtree prune and regraft distance
-
Dalhousie University
-
G. HICKEY, F. DEHNE, A. RAU-CHAPLIN, and C. BLOUIN, The Computational Complexity of the Unrooted Subtree Prune and Regraft Distance, Technical report CS-2006-06, Faculty of Computer Science, Dalhousie University, 2006.
-
(2006)
Technical Report CS-2006-06, Faculty of Computer Science
-
-
Hickey, G.1
Dehne, F.2
Rau-Chaplin, A.3
Blouin, C.4
-
18
-
-
41049096780
-
SPR distance computation for unrooted trees
-
G. HICKEY, F. DEHNE, A. RAU-CHAPLIN, and C. BLOUIN, SPR distance computation for unrooted trees, Evolutionary Bioinform., 4 (2008), pp. 17-27. (Pubitemid 351419609)
-
(2008)
Evolutionary Bioinformatics
, vol.2008
, Issue.4
, pp. 17-27
-
-
Hickey, G.1
Dehne, F.2
Rau-Chaplin, A.3
Blouin, C.4
-
19
-
-
0003671904
-
-
Sinauer Associates, Sunderland, MA
-
D. M. HILLIS, C. MORITZ, and B. K. MABLE, EDS., Molecular Systematics, Sinauer Associates, Sunderland, MA, 1996.
-
(1996)
Molecular Systematics
-
-
Hillis, D.M.1
Moritz, C.2
Mable, B.K.3
-
20
-
-
84884930751
-
-
Preprint, arXiv:1112.5359
-
S. KELK, L. VAN IERSEL, N. LEKIC, S. LINZ, C. SCORNAVACCA, and L. STOUGIE, Cycle Killer⋯ qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set, Preprint, arXiv:1112.5359, 2011.
-
(2011)
Cycle Killer⋯ Qu'est-ce que C'est on the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set
-
-
Kelk, S.1
Van Iersel, L.2
Lekic, N.3
Linz, S.4
Scornavacca, C.5
Stougie, L.6
-
22
-
-
18944369385
-
Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
-
D. MACLEOD, R. L. CHARLEBOIS, F. DOOLITTLE, and E. BAPTESTE, Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement, BMC Evolutionary Biol., 5 (2005), p. 27.
-
(2005)
BMC Evolutionary Biol.
, vol.5
, pp. 27
-
-
Macleod, D.1
Charlebois, R.L.2
Doolittle, F.3
Bapteste, E.4
-
23
-
-
0031504952
-
Gene trees in species trees
-
W. P. MADDISON, Gene trees in species trees, System. Biol., 46 (1997), pp. 523-536.
-
(1997)
System. Biol.
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
24
-
-
26844458739
-
RIATA-HGT: A fast and accurate heuristic for reconstructing horizontal gene transfer
-
Computing and Combinatorics: 11th Annual International Conference, COCOON 2005. Proceedings
-
L. NAKHLEH, D. A. RUTHS, and L.-S. WANG, RIATA-HGT: A fast and accurate heuristic for reconstructing horizontal gene transfer, in Proceedings of the 11th International Conference on Computing and Combinatorics, Lecture Notes in Comput. Sci. 3595, Springer-Verlag, Berlin, 2005, pp. 84-93. (Pubitemid 41450189)
-
(2005)
Lecture Notes in Computer Science
, vol.3595
, pp. 84-93
-
-
Nakhleh, L.1
Ruths, D.2
Wang, L.-S.3
-
25
-
-
23844438866
-
Reconstructing reticulate evolution in species - Theory and practice
-
DOI 10.1089/cmb.2005.12.796
-
L. NAKHLEH, T. WARNOW, C. R. LINDNER, and K. ST. JOHN, Reconstructing reticulate evolution in species-theory and practice, J. Comput. Biol., 12 (2005), pp. 796-811. (Pubitemid 41170482)
-
(2005)
Journal of Computational Biology
, vol.12
, Issue.6
, pp. 796-811
-
-
Nakhleh, L.1
Warnow, T.2
Linder, C.R.3
St. John, K.4
-
26
-
-
0019424782
-
Comparison of phylogenetic trees
-
DOI 10.1016/0025-5564(81)90043-2
-
D. F. ROBINSON and L. R. FOULDS, Comparison of phylogenetic trees, Math. Biosci., 53 (1981), pp. 131-147. (Pubitemid 11129084)
-
(1981)
Mathematical Biosciences
, vol.53
, Issue.1-2
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
27
-
-
33947392953
-
The maximum agreement forest problem: Approximation algorithms and computational experiments
-
DOI 10.1016/j.tcs.2006.12.011, PII S0304397506008930
-
E. M. RODRIGUES, M.-F. SAGOT, and Y. WAKABAYASHI, The maximum agreement forest problem: Approximation algorithms and computational experiments, Theoret. Comput. Sci., 374 (2007), pp. 91-110. (Pubitemid 46452973)
-
(2007)
Theoretical Computer Science
, vol.374
, Issue.1-3
, pp. 91-110
-
-
Rodrigues, E.M.1
Sagot, M.-F.2
Wakabayashi, Y.3
-
28
-
-
33646855789
-
Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis
-
DOI 10.1093/molbev/msj120
-
V. ROSAS-MAGALLANES, P. DESCHAVANNE, L. QUINTANA-MURCI, R. BROSCH, B. GICQUEL, and O. NEYROLLES, Horizontal transfer of a virulence operon to the ancestor of mycobacterium tuberculosis, Molecular Biol. Evolution, 23 (2006), pp. 1129-1135. (Pubitemid 43781588)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.6
, pp. 1129-1135
-
-
Rosas-Magallanes, V.1
Deschavanne, P.2
Quintana-Murci, L.3
Brosch, R.4
Gicquel, B.5
Neyrolles, O.6
-
30
-
-
70350402949
-
-
MS thesis, Dalhousie University, Halifax, NS
-
C. WHIDDEN, A Unifying View on Approximation and FPT of Agreement Forests, MS thesis, Dalhousie University, Halifax, NS, 2009.
-
(2009)
A Unifying View on Approximation and FPT of Agreement Forests
-
-
Whidden, C.1
-
31
-
-
78149251780
-
Fast FPT algorithms for computing rooted agreement forests: Theory and experiments
-
Lecture Notes in Comput. Sci. 6049, Springer-Verlag, Berlin
-
C. WHIDDEN, R. G. BEIKO, and N. ZEH, Fast FPT algorithms for computing rooted agreement forests: Theory and experiments, in Proceedings of the 9th International Symposium on Experimental Algorithms, Lecture Notes in Comput. Sci. 6049, Springer-Verlag, Berlin, 2010, pp. 141-153.
-
(2010)
Proceedings of the 9th International Symposium on Experimental Algorithms
, pp. 141-153
-
-
Whidden, C.1
Beiko, R.G.2
Zeh, N.3
-
32
-
-
84866721994
-
-
Preprint, arXiv:1108.2664
-
C. WHIDDEN, R. G. BEIKO, and N. ZEH, Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests, Preprint, arXiv:1108.2664, 2011.
-
(2011)
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests
-
-
Whidden, C.1
Beiko, R.G.2
Zeh, N.3
-
33
-
-
70350370655
-
A unifying view on approximation and FPT of agreement forests
-
Lecture Notes in Bioinformatics 5724, Springer-Verlag, Berlin
-
C. WHIDDEN and N. ZEH, A unifying view on approximation and FPT of agreement forests, in Proceedings of the 9th International Workshop, Lecture Notes in Bioinformatics 5724, Springer-Verlag, Berlin, 2009, pp. 390-401.
-
(2009)
Proceedings of the 9th International Workshop
, pp. 390-401
-
-
Whidden, C.1
Zeh, N.2
-
34
-
-
58349106238
-
A practical method for exact computation of subtree prune and regraft distance
-
Y. WU, A practical method for exact computation of subtree prune and regraft distance, Bioinformatics, 25 (2009), pp. 190-196.
-
(2009)
Bioinformatics
, vol.25
, pp. 190-196
-
-
Wu, Y.1
-
35
-
-
77953759624
-
Fast computation of the exact hybridization number of two phylogenetic trees
-
Y. WU and J. WANG, Fast computation of the exact hybridization number of two phylogenetic trees, Bioinformatics Research Appl., (2010), pp. 203-214.
-
(2010)
Bioinformatics Research Appl.
, pp. 203-214
-
-
Wu, Y.1
Wang, J.2
|