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Volumn 13, Issue 8, 2006, Pages 1419-1434

Approximating subtree distances between phylogenies

Author keywords

Approximation algorithms; Phylogeny; SPR distance

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; METHODOLOGY; PHYLOGENY;

EID: 34547963170     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2006.13.1419     Document Type: Article
Times cited : (40)

References (27)
  • 1
    • 33645430074 scopus 로고    scopus 로고
    • Ancestral maximum likelihood of phylogenetic trees is hard
    • Addario-Berry, L., Chor, B., Hallett, M., et al. 2003. Ancestral maximum likelihood of phylogenetic trees is hard. Lect. Notes Comput. Sci. 2812, 202-215.
    • (2003) Lect. Notes Comput. Sci , vol.2812 , pp. 202-215
    • Addario-Berry, L.1    Chor, B.2    Hallett, M.3
  • 2
    • 0347512294 scopus 로고    scopus 로고
    • Subtree transfer operations and their induced metrics on evolutionary trees
    • Allen, B., and Steel, M. 2001. Subtree transfer operations and their induced metrics on evolutionary trees. Ann. Combinatorics 5, 1-13.
    • (2001) Ann. Combinatorics , vol.5 , pp. 1-13
    • Allen, B.1    Steel, M.2
  • 3
    • 84948755297 scopus 로고    scopus 로고
    • 8th IEEE Symp. Inform. Visualization (InfoVis 2002) 71-74. Software available at: comet.lehman.cuny.edu/treeviz
    • Amenta, N., and Klingner, J. 2002. Case study: visualizing sets of evolutionary trees. 8th IEEE Symp. Inform. Visualization (InfoVis 2002) 71-74. Software available at: comet.lehman.cuny.edu/treeviz.
    • (2002)
    • Amenta, N.1    Klingner, J.2
  • 4
    • 22844448185 scopus 로고    scopus 로고
    • Bounding the number of hybridisation events for a consistent evolutionary history
    • Baroni, M., Grunewald, S., Moulton, V., et al. 2005. Bounding the number of hybridisation events for a consistent evolutionary history. TJ. Math. Biol. 51, 171-182.
    • (2005) TJ. Math. Biol , vol.51 , pp. 171-182
    • Baroni, M.1    Grunewald, S.2    Moulton, V.3
  • 5
    • 13844266486 scopus 로고    scopus 로고
    • On the computational complexity of the rooted subtree prune and regraft distance
    • Bordewich, M., and Semple, C. 2005. On the computational complexity of the rooted subtree prune and regraft distance. Ann. Combinatorics 8, 409-423.
    • (2005) Ann. Combinatorics , vol.8 , pp. 409-423
    • Bordewich, M.1    Semple, C.2
  • 6
    • 58449114531 scopus 로고    scopus 로고
    • Computing the minimum number of hybridisation events for a consistent evolutionary history
    • in press
    • Bordewich, M., and Semple, C. 2006. Computing the minimum number of hybridisation events for a consistent evolutionary history. Discrete Applied Mathematics, in press.
    • (2006) Discrete Applied Mathematics
    • Bordewich, M.1    Semple, C.2
  • 7
    • 0033521173 scopus 로고    scopus 로고
    • Predicting the evolution of human influenza a
    • Bush, R., Bender, C., Subbarao, K., et al. 1999. Predicting the evolution of human influenza a. Science 286, 1921-1925.
    • (1999) Science , vol.286 , pp. 1921-1925
    • Bush, R.1    Bender, C.2    Subbarao, K.3
  • 8
    • 0003002776 scopus 로고
    • Optimal algorithms for comparing trees with labeled leaves
    • Day, W.H.E. 1985. Optimal algorithms for comparing trees with labeled leaves. J. Classific. 2, 7-28.
    • (1985) J. Classific , vol.2 , pp. 7-28
    • Day, W.H.E.1
  • 9
    • 26444521262 scopus 로고    scopus 로고
    • A linear-time algorithm for the perfect phylogeny haplotyping (pph) problem
    • Ding, Z., Filkov, V., and Gusfield, D. 2005. A linear-time algorithm for the perfect phylogeny haplotyping (pph) problem. RECOMB 2005 585-600.
    • (2005) RECOMB 2005 , pp. 585-600
    • Ding, Z.1    Filkov, V.2    Gusfield, D.3
  • 10
    • 0003081588 scopus 로고
    • The Steiner tree problem in phylogeny is np-complete
    • Foulds, L.R., and Graham, R.L. 1982. The Steiner tree problem in phylogeny is np-complete. Adv. Appl. Math. 3, 43-49.
    • (1982) Adv. Appl. Math , vol.3 , pp. 43-49
    • Foulds, L.R.1    Graham, R.L.2
  • 11
    • 0344066284 scopus 로고    scopus 로고
    • Language-tree divergence times support the Anatolian theory of Indo-European origin
    • Gray, R., and Atkinson, Q. 2003. Language-tree divergence times support the Anatolian theory of Indo-European origin. Nature 426, 435-439.
    • (2003) Nature , vol.426 , pp. 435-439
    • Gray, R.1    Atkinson, Q.2
  • 12
    • 35048838589 scopus 로고    scopus 로고
    • An overview of combinatorial methods for haplotype inference
    • Gusfield, D. 2004. An overview of combinatorial methods for haplotype inference. Lect. Notes Comput. Sci. 2983, 9-25.
    • (2004) Lect. Notes Comput. Sci , vol.2983 , pp. 9-25
    • Gusfield, D.1
  • 13
    • 0002291589 scopus 로고    scopus 로고
    • On the complexity of comparing evolutionary trees
    • Hein, J., Jiang, T., Wang, L., et al. 1996. On the complexity of comparing evolutionary trees. Discrete Appl. Math. 71, 153-169.
    • (1996) Discrete Appl. Math , vol.71 , pp. 153-169
    • Hein, J.1    Jiang, T.2    Wang, L.3
  • 14
    • 22844442543 scopus 로고    scopus 로고
    • Analysis and visualization of tree space
    • Hillis, D., Heath, T., and John, K.S. 2005. Analysis and visualization of tree space. J. System. Biol. 3, 471-482.
    • (2005) J. System. Biol , vol.3 , pp. 471-482
    • Hillis, D.1    Heath, T.2    John, K.S.3
  • 15
    • 0033521069 scopus 로고    scopus 로고
    • Predictive evolution
    • Hillis, D.M. 1999. Predictive evolution. Science 286, 1866-1867.
    • (1999) Science , vol.286 , pp. 1866-1867
    • Hillis, D.M.1
  • 17
    • 0034849408 scopus 로고    scopus 로고
    • Mrbayes: Bayesian inference of phylogeny
    • Huelsenbeck, J.P., and Ronquist, F. 2001. Mrbayes: Bayesian inference of phylogeny. Bioinformatics 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 18
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison, W. 1997. Gene trees in species trees. Syst. Biol. 46, 523-536.
    • (1997) Syst. Biol , vol.46 , pp. 523-536
    • Maddison, W.1
  • 19
    • 77953998482 scopus 로고    scopus 로고
    • TreeJuxtaposer: Scalable tree comparison using Focus+Context with guaranteed visibility
    • Munzner, T., Guimbrètiere, F., Tasiran, S., et al. 2003. TreeJuxtaposer: scalable tree comparison using Focus+Context with guaranteed visibility. SIGGRAPH 2003 Proc. (Trans. Graphics) 453-462.
    • (2003) SIGGRAPH 2003 Proc. (Trans. Graphics) , pp. 453-462
    • Munzner, T.1    Guimbrètiere, F.2    Tasiran, S.3
  • 20
    • 23844438866 scopus 로고    scopus 로고
    • Reconstructing reticulate evolution in species-theory and practice
    • Nakhleh, L.K., Warnow, T., Linder, C.R., et al. 2005. Reconstructing reticulate evolution in species-theory and practice. J. Comput. Biol. 12, 6-7.
    • (2005) J. Comput. Biol , vol.12 , pp. 6-7
    • Nakhleh, L.K.1    Warnow, T.2    Linder, C.R.3
  • 21
    • 0036094391 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 subtype c molecular phylogeny: Consensus sequence for an aids vaccine design?
    • Novitsky, V., Smith, U.R., Gilbert, P., et al. 2002. Human immunodeficiency virus type 1 subtype c molecular phylogeny: consensus sequence for an aids vaccine design? J. Virol. 76, 5435-5451.
    • (2002) J. Virol , vol.76 , pp. 5435-5451
    • Novitsky, V.1    Smith, U.R.2    Gilbert, P.3
  • 22
    • 0031949028 scopus 로고    scopus 로고
    • Trees within trees: Phylogeny and historical associations
    • Page, R., and Charleston, M. 1998. Trees within trees: phylogeny and historical associations. Trends Ecol. Evol. 13, 356-359.
    • (1998) Trends Ecol. Evol , vol.13 , pp. 356-359
    • Page, R.1    Charleston, M.2
  • 23
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson, D., and Foulds, L. 1981. Comparison of phylogenetic trees. Math. Biosci. 53, 131-147.
    • (1981) Math. Biosci , vol.53 , pp. 131-147
    • Robinson, D.1    Foulds, L.2
  • 24
    • 33144459988 scopus 로고    scopus 로고
    • A short proof that phylogenetic tree reconstruction by maximum likelihood is hard
    • Roch, S. 2006. A short proof that phylogenetic tree reconstruction by maximum likelihood is hard. IEEE/ACM Trans. Comput. Biol. Bioinform. 3, 92-94.
    • (2006) IEEE/ACM Trans. Comput. Biol. Bioinform , vol.3 , pp. 92-94
    • Roch, S.1
  • 25
    • 84923082288 scopus 로고    scopus 로고
    • Some approximation results for the maximum agreement forest problem
    • Rodrigues, E.M., Sagot, M.-F., and Wakabayashi, Y. 2001. Some approximation results for the maximum agreement forest problem. Lect. Notes Comput. Sci. 2129, 159-169.
    • (2001) Lect. Notes Comput. Sci , vol.2129 , pp. 159-169
    • Rodrigues, E.M.1    Sagot, M.-F.2    Wakabayashi, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.