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Volumn 28, Issue 1, 2014, Pages 49-66

Approximation algorithms for nonbinary agreement forests

Author keywords

Agreement forests; Approximation algorithm; Fixed parameter tractability; Phylogenetic network; Phylogenetic tree

Indexed keywords

BINARY TREES; BIOINFORMATICS; FORESTRY; POLYNOMIAL APPROXIMATION;

EID: 84898885151     PISSN: 08954801     EISSN: None     Source Type: Journal    
DOI: 10.1137/120903567     Document Type: Article
Times cited : (13)

References (31)
  • 1
    • 22844448185 scopus 로고    scopus 로고
    • Bounding the number of hybridisation events for a consistent evolutionary history
    • M. Baroni, S. Gr?unewald, V. Moulton, and C. Semple, Bounding the number of hybridisation events for a consistent evolutionary history, J. Math. Biol., 51 (2005), pp. 171-182
    • (2005) J. Math. Biol , vol.51 , pp. 171-182
    • Baroni, M.1    Grunewald, S.2    Moulton, V.3    Semple, C.4
  • 2
    • 13844296576 scopus 로고    scopus 로고
    • A framework for representing reticulate evolution
    • M. Baroni, C. Semple, and M. Steel, A framework for representing reticulate evolution, Ann. Combin., 8 (2004), pp. 391-408
    • (2004) Ann. Combin , vol.8 , pp. 391-408
    • Baroni, M.1    Semple, C.2    Steel, M.3
  • 3
    • 34547963170 scopus 로고    scopus 로고
    • Approximating subtree distances between phylogenies
    • M. L. Bonet, K. St. John, R. Mahindru, and N. Amenta, Approximating subtree distances between phylogenies, J. Comput. Biol., 13 (2006), pp. 1419-1434
    • (2006) J. Comput. Biol , vol.13 , pp. 1419-1434
    • Bonet, M.L.1    St. John, K.2    Mahindru, R.3    Amenta, N.4
  • 4
    • 41049088296 scopus 로고    scopus 로고
    • A reduction algorithm for computing the hybridization number of two trees
    • M. Bordewich, S. Linz, K. St. John, and C. Semple, A reduction algorithm for computing the hybridization number of two trees, Evolutionary Bioinform., 3 (2007), pp. 86-98
    • (2007) Evolutionary Bioinform , vol.3 , pp. 86-98
    • Bordewich, M.1    Linz, S.2    St. John, K.3    Semple, C.4
  • 5
    • 47549103966 scopus 로고    scopus 로고
    • A 3-approximation algorithm for the subtree distance between phylogenies
    • M. Bordewich, C. McCartin, and C. Semple, A 3-approximation algorithm for the subtree distance between phylogenies, J. Discrete Algorithms, 6 (2008), pp. 458-471
    • (2008) J. Discrete Algorithms , vol.6 , pp. 458-471
    • Bordewich, M.1    McCartin, C.2    Semple, C.3
  • 6
    • 13844266486 scopus 로고    scopus 로고
    • On the computational complexity of the rooted subtree prune and regraft distance
    • M. Bordewich and C. Semple, On the computational complexity of the rooted subtree prune and regraft distance, Ann. Combin., 8 (2005), pp. 409-423
    • (2005) Ann. Combin , vol.8 , pp. 409-423
    • Bordewich, M.1    Semple, C.2
  • 7
    • 34547977053 scopus 로고    scopus 로고
    • Computing the hybridization number of two phylogenetic trees is fixed-parameter tractable
    • M. Bordewich and C. Semple, Computing the hybridization number of two phylogenetic trees is fixed-parameter tractable, IEEE/ACM Trans. Comput. Biol. Bioinform., 4 (2007), pp. 458-466
    • (2007) IEEE/ACM Trans. Comput. Biol. Bioinform , vol.4 , pp. 458-466
    • Bordewich, M.1    Semple, C.2
  • 8
    • 33947231094 scopus 로고    scopus 로고
    • Computing the minimum number of hybridization events for a consistent evolutionary history
    • M. Bordewich and C. Semple, Computing the minimum number of hybridization events for a consistent evolutionary history, Discrete Appl. Math., 155 (2007), pp. 914-928
    • (2007) Discrete Appl. Math , vol.155 , pp. 914-928
    • Bordewich, M.1    Semple, C.2
  • 9
    • 12244299880 scopus 로고    scopus 로고
    • Approximating the maximum agreement forest on k trees
    • F. Chataigner, Approximating the maximum agreement forest on k trees, Inform. Process. Lett., 93 (2005), pp. 239-244
    • (2005) Inform. Process. Lett , vol.93 , pp. 239-244
    • Chataigner, F.1
  • 10
    • 78149247301 scopus 로고    scopus 로고
    • Hybridnet: A tool for constructing hybridization networks
    • Z-Z. Chen and L. Wang, Hybridnet: A tool for constructing hybridization networks, Bioinform., 26 (2010), pp. 2912-2913
    • (2010) Bioinform , vol.26 , pp. 2912-2913
    • Chen, Z.-Z.1    Wang, L.2
  • 12
    • 80053108302 scopus 로고    scopus 로고
    • Quantifying hybridization in realistic time
    • J. Collins, S. Linz, and C. Semple, Quantifying hybridization in realistic time, J. Comput. Biol., 18 (2011), pp. 1305-1318
    • (2011) J. Comput. Biol , vol.18 , pp. 1305-1318
    • Collins, J.1    Linz, S.2    Semple, C.3
  • 13
    • 0000255727 scopus 로고    scopus 로고
    • Approximating minimum feedback sets and multicuts in directed graphs
    • G. Even, J. Naor, B. Schieber, and M. Sudan, Approximating minimum feedback sets and multicuts in directed graphs, Algorithmica, 20 (1998), pp. 151-174
    • (1998) Algorithmica , vol.20 , pp. 151-174
    • Even, G.1    Naor, J.2    Schieber, B.3    Sudan, M.4
  • 15
    • 26844472474 scopus 로고    scopus 로고
    • O. Gascuel ed., Oxford University Press, Oxford, UK
    • O. Gascuel, ed., Mathematics of Evolution and Phylogeny, Oxford University Press, Oxford, UK, 2005
    • (2005) Mathematics of Evolution and Phylogeny
  • 17
    • 0002291589 scopus 로고    scopus 로고
    • On the complexity of comparing evolutionary trees
    • J. Hein, T. Jiang, L. Wang, and K. Zhang, On the complexity of comparing evolutionary trees, Discrete Appl. Math., 71 (1996), pp. 153-169
    • (1996) Discrete Appl. Math , vol.71 , pp. 153-169
    • Hein, J.1    Jiang, T.2    Wang, L.3    Zhang, K.4
  • 19
    • 84866648823 scopus 로고    scopus 로고
    • A practical approximation algorithm for solving massive instances of hybridization number
    • B. Raphael and J. Tang, eds Springer, New York
    • L. J. J. van Iersel, S. M. Kelk, N. Leki'c, and C. Scornavacca, A practical approximation algorithm for solving massive instances of hybridization number, in Algorithms in Bioinformatics, Lecture Notes in Comput. Sci. 7534, B. Raphael and J. Tang, eds. Springer, New York, 2012, pp. 430-440
    • (2012) Algorithms in Bioinformatics, Lecture Notes in Comput. Sci , vol.7534 , pp. 430-440
    • Van Iersel, L.J.J.1    Kelk, S.M.2    Leki'C, N.3    Scornavacca, C.4
  • 23
    • 84861004665 scopus 로고    scopus 로고
    • An introduction to phylogenetic networks
    • Available online at
    • D. A. Morrison, An Introduction to Phylogenetic Networks, RJR Productions, 2011. Available online at http://www.rjr-productions.org/Networks/
    • (2011) RJR Productions
    • Morrison, D.A.1
  • 25
    • 43049147409 scopus 로고    scopus 로고
    • Invitation to fixed-parameter algorithms
    • Oxford University Press, Oxford, UK
    • R. Niedermeier, Invitation to Fixed-Parameter Algorithms, Oxford Lecture Ser. Math. Appl. 31, Oxford University Press, Oxford, UK, 2006
    • (2006) Oxford Lecture Ser. Math. Appl , vol.31
    • Niedermeier, R.1
  • 26
    • 84878308660 scopus 로고    scopus 로고
    • A simple fixed parameter tractable algorithm for computing the hybridization number of two not necessarily binary trees
    • T. Piovesan and S. M. Kelk, A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees, IEEE/ACM Trans. Comput. Biol. Bioinform., 10 (2013), pp. 18-25
    • (2013) IEEE/ACM Trans. Comput. Biol. Bioinform , vol.10 , pp. 18-25
    • Piovesan, T.1    Kelk, S.M.2
  • 27
    • 33947392953 scopus 로고    scopus 로고
    • The maximum agreement forest problem: Approximation algorithms and computational experiments
    • E. M. Rodrigues, M.-F. Sagot, and Y. Wakabayashi, The maximum agreement forest problem: Approximation algorithms and computational experiments, Theoret. Comput. Sci., 374 (2007), pp. 91-110
    • (2007) Theoret. Comput. Sci , vol.374
    • Rodrigues, E.M.1    Sagot, M.-F.2    Wakabayashi, Y.3
  • 28
    • 84868640873 scopus 로고    scopus 로고
    • A first step towards computing all hybridization networks for two rooted binary phylogenetic trees
    • C. Scornavacca, S. Linz, and B. Albrecht, A first step towards computing all hybridization networks for two rooted binary phylogenetic trees, J. Comput. Biol., 19 (2012), pp. 1227- 1242
    • (2012) J. Comput. Biol , vol.19 , pp. 1227-1242
    • Scornavacca, C.1    Linz, S.2    Albrecht, B.3
  • 31
    • 84884945088 scopus 로고    scopus 로고
    • Fixed-parameter algorithms for maximum agreement forests
    • C. Whidden, R. G. Beiko, and N. Zeh, Fixed-parameter algorithms for maximum agreement forests, SIAM J. Comput., 42 (2013), pp. 1431-1466
    • (2013) SIAM J. Comput , vol.42 , pp. 1431-1466
    • Whidden, C.1    Beiko, R.G.2    Zeh, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.