Antimicrobial resistance in faecal Escherichia coli isolates from farmed red deer and wild small mammals. Detection of a multiresistant E. coli producing extended-spectrum beta-lactamase

Comparative Immunology, Microbiology and Infectious Diseases

Volumn 45, Issue , 2016, Pages 34-39

  Alonso, C A ^a   Gonzalez Barrio D ^b   Tenorio, Carmen ^a   Ruiz Fons, F ^b   Torres, C ^a  

^a UNIVERSITY OF LA RIOJA   (Spain)

^b INSTITUTO DE INVESTIGACIÓN EN RECURSOS CINEGÉTICOS IREC CSIC UCLM JCCM   (Spain)

Author keywords

Antimicrobial resistance; Deer; ESBL; Escherichia coli; Small mammals; Wildlife

Indexed keywords

AMIKACIN; AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; CEFOTAXIME; CEFOXITIN; CEFTAZIDIME; CHLORAMPHENICOL; CIPROFLOXACIN; COTRIMOXAZOLE; GENTAMICIN; IMIPENEM; NALIDIXIC ACID; QUINOLINE DERIVED ANTIINFECTIVE AGENT; TETRACYCLINE; TOBRAMYCIN; ANTIINFECTIVE AGENT; BETA LACTAMASE;

AADA1 GENE; AADA2 GENE; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; APODEMUS SYLVATICUS; ARTICLE; BACTERIAL GENE; BACTERIUM DETECTION; BLACTX M 1 GENE; BLAPSE 1 GENE; CMLA1 GENE; CONTROLLED STUDY; CROCIDURA RUSSULA; DFRA16 GENE; EXTENDED SPECTRUM BETA LACTAMASE PRODUCING ESCHERICHIA COLI; INTL1 GENE; IS26 GENE; IS440 GENE; MEF(B) GENE; MICROBIAL DIVERSITY; MOUSE; NONHUMAN; ORF1 GENE; ORYCTOLAGUS CUNICULUS; PHYLOGENY; POINT MUTATION; PREVALENCE; QACH GENE; RATTUS RATTUS; RED DEER; SHREW; SPAIN; SUL3 GENE; ANIMAL; BIOSYNTHESIS; DEER; DOMESTIC ANIMAL; DRUG EFFECTS; ENZYMOLOGY; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; FECES; GENETICS; INTEGRON; ISOLATION AND PURIFICATION; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; MOLECULAR TYPING; MULTIDRUG RESISTANCE; RODENT; VETERINARY; WILD ANIMAL;

ANIMALS; ANIMALS, DOMESTIC; ANIMALS, WILD; ANTI-INFECTIVE AGENTS; BETA-LACTAMASES; DEER; DRUG RESISTANCE, MULTIPLE; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; FECES; INTEGRONS; MICROBIAL SENSITIVITY TESTS; MOLECULAR TYPING; PHYLOGENY; PREVALENCE; RODENTIA; SPAIN;

EID: 84959142388     PISSN: 01479571     EISSN: 18781667     Source Type: Journal    
DOI: 10.1016/j.cimid.2016.02.003     Document Type: Article

References (43)

1. van den Bogaard A.E., Stobberingh E.E. Epidemiology of resistance to antibiotics. Links between animals and humans. Int. J. Antimicrob. Agents 2000, 14:327-335.
2. CMY-2 genes in Escherichia coli from healthy humans and animals in Tunisia. Microb. Drug Resist. 2014, 20:495-500.
3. Smet A., Martel A., Persoons D., Dewulf J., Heyndrickx M., Herman L., Haesebrouck F., Butaye P. Broad-spectrum β-lactamases among Enterobacteriaceae of animal origin: molecular aspects, mobility and impact on public health. FEMS Microbiol. Rev. 2010, 34:295-316.
4. Wieler L.H., Ewers C., Guenther S., Walther B., Lubke-Becker A. Methicillin-resistant staphylococci (MRS) and extended spectrum-betalactamases (ESBL)-producing Enterobacteriaceae in companion animals: nosocomial infections as one reason for the rising prevalence of these potential zoonotic pathogens in clinical samples. Int. J. Med. Microbiol. 2011, 301:635-641.
5. Sallem R.B., Gharsa H., Slama K.B., Rojo-Bezares B., Estepa V., Porres-Osante N., Jouini A., Klibi N., Sáenz Y., Boudabous A., Torres C. First detection of CTX-M-1, CMY-2, and QnrB19 resistance mechanisms in fecal Escherichia coli isolates from healthy pets in Tunisia. Vector Borne Zoonotic Dis. 2013, 13:98-102.
6. Dierikx C., van der Goot J., Fabri T., van Essen-Zanbergen A., Smith H., Mevius D. Extended-spectrum-β-lactamase- and AmpC-β-lactamase-producing Escherichia coli in Dutch broilers and broiler farmers. J. Antimicrob. Chemother. 2013, 68:60-67.
7. Costa D., Poeta P., Sáenz Y., Vinué L., Rojo-Bezares B., Jouini A., Zarazaga M., Rodrigues J., Torres C. Detection of Escherichia coli harbouring extended-spectrum beta-lactamases of the CTX-M, TEM and SHV classes in faecal samples of wild animals in Portugal. J. Antimicrob. Chemother. 2006, 58:1311-1312.
8. Heininger A., Binder M., Schmidt S., Unertl K., Botzenhart K., Döring G. PCR and blood culture for detection of Escherichia coli bacteremia in rats. J. Clin. Microbiol. 1999, 37:2479-2482.
9. Clinical and Laboratory Standards Institute (CLSI) Performance Standards for Antimicrobial Susceptibility Testing. Twenty-fourth Informational Supplement. M100-S24. 2014, National Committee for Clinical Laboratory Standards, Wayne, PA.
10. Vinué L., Sáenz Y., Martínez S., Somalo S., Moreno M.A., Torres C., Zarazaga M. Prevalence and diversity of extended-spectrum beta-lactamases in faecal Escherichia coli isolates from healthy humans in Spain. Clin. Microbiol. Infect. 2009, 15:954-957.
11. Ruiz E., Sáenz Y., Zarazaga M., Rocha-Gracia R., Martínez-Martínez L., Arlet G., Torres C. qnr, aac(6')-Ib-cr and qepA genes in Escherichia coli and Klebsiella spp.: genetic environments and plasmid and chromosomal location. J. Antimicrob. Chemother. 2012, 67:886-897.
12. Mazel D., Dychinco B., Webb V.A., Davies J. Antibiotic resistance in the ECOR collection: integrons and identification of a novel aad gene. Antimicrob. Agents Chemother. 2000, 44:1568-1574.
13. Carattoli A., Bertini A., Villa L., Falbo V., Hopkins K.L., Threlfall E.J. Identification of plasmids by PCR-based replicon typing. J. Microbiol. Methods 2005, 63:219-228.
14. Clermont O., Christenson J.K., Denamur E., Gordon D.M. The Clermont E. coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ. Microbiol. Rep. 2013, 5:58-65.
15. Masters N., Christie M., Stratton H., Katouli M. Viability and stability of Escherichia coli and enterococci populations in fecal samples upon freezing. Can. J. Microbiol. 2015, 61:495-501.
16. Silva N., Igrejas G., Figueiredo N., Goncalvez A., Radhouani H., Rodrigues J., Poeta P. Molecular characterization of antimicrobial resistance in enterococci and Escherichia coli isolates from European wild rabbit (Oryctolagus cuniculus). Sci. Total Environ. 2010, 408:4871-4876.
17. Literak I., Dolejska M., Radimersky T., Klimes J., Friedman M., Aarestup F.M., Hasman H., Cizek A. Antimicrobial-resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended-spectrum beta-lactamases in wild boars. J. Appl. Microbiol. 2010, 108:1702-1711.
18. Ben Sallem R., Ben Slama K., Sáenz Y., Rojo-Bezares B., Estepa V., Jouini A., Gharsa H., Klibi N., Boudabou A., Torres C. Prevalence and characterization of extended-spectrum beta-lactamase (ESBL) and CMY-2-producing Escherichia coli isolates from healthy food-producing animals in Tunisia. Foodborne Pathog. Dis. 2012, 9:1137-1142.
19. Pinto L., Radhouani H., Coelho C., Martins da Costa P., Simoes R., Brandao R.M., Torres C., Igrejas G., Poeta P. Genetic detection of extended-spectrum beta-lactamase-containing Escherichia coli isolates from birds of prey from Serra da Estrela Natural Reserve in Portugal. Appl. Environ. Microbiol. 2010, 76:4118-4120.
20. Hasan B., Melhus A., Sandegren L., Allam M., Olsen B. The gull (Chroicocephalus brunnicephalus) as an environmental bioindicator and reservoir for antibiotic resistance on the coastlines of the Bay of Bengal. Microb. Drug Resist. 2014, 20:466-471.
21. Poeta P., Radhouani H., Pinto L., Martino A., Rego V., Rodrigues R., Gonçalves A., Rodrigues J., Estepa V., Torres C., Igrejas G. Wild boars as reservoirs of extended-spectrum beta-lactamase (ESBL) producing Escherichia coli of different phylogenetic groups. J. Basic Microbiol. 2009, 49:584-588.
22. Radhouani H., Igrejas G., Gonçalves A., Estepa V., Sargo R., Torres C., Poeta P. Molecular characterization of extended-spectrum-beta-lactamase-producing Escherichia coli isolates from red foxes in Portugal. Arch. Microbiol. 2012, 195:141-144.
23. Agersø Y., Aarestrup F.M. Voluntary ban on cephalosporin use in Danish pig production has effectively reduced extended-spectrum cephalosporinase-producing Escherichia coli in slaughter pigs. J. Antimicrob. Chemother. 2013, 68:569-572.
24. Durso L.M., Cook K.L. Impacts of antibiotic use in agriculture: what are the benefits and risks?. Curr. Opin. Microbiol. 2014, 19:37-44.
25. Martinez J.L. Environmental pollution by antibiotics and by antibiotic resistance determinants. Environ. Pollut. 2009, 157:2893-2902.
26. Williams N.J., Sherlock C., Jones T.R., Clough H.E., Telfer S.E., Begon M., French N., Hart C.A., Bennett M. The prevalence of antimicrobial-resistant Escherichia coli in sympatric wild rodents varies by season and host. J. Appl. Microbiol. 2011, 110:962-970.
27. Bryan A., Shapir N., Sadowsky M.J. Frequency and distribution of tetracycline resistance genes in genetically diverse, non selected, and nonclinical Escherichia coli strains isolated from diverse human and animal sources. Appl. Environ. Microbiol. 2004, 70:2503-2507.
28. Costa D., Poeta P., Sáenz Y., Vinué L., Coelho A.C., Matos M., Rojo-Bezares B., Rodrigues J., Torres C. Mechanisms of antibiotic resistance in Escherichia coli isolates recovered from wild animals. Microb. Drug Resist. 2008, 14:71-77.
29. Radhouani H., Igrejas G., Gonçalves A., Pacheco R., Monteiro R., Sargo R., Brito F., Torres C., Poeta P. Antimicrobial resistance and virulence genes in Escherichia coli and enterococci from red foxes (Vulpes vulpes). Anaerobe 2013, 23:82-86.
30. Cavaco L.M., Frimodt-Møller N., Hasman H., Guardabassi L., Nielsen L., Aarestrup F.M. Prevalence of quinolone resistance mechanisms and associations to minimum inhibitory concentrations in quinolone-resistant Escherichia coli isolated from humans and swine in Denmark. Microb. Drug Resist. 2008, 14:163-169.
31. Radhouani H., Silva N., Poeta P., Torres C., Correia S., Igrejas G. Potential impact of antimicrobial resistance in wild life, environment, and human health. Front. Microbiol. 2014, 5:23.
32. Valentin L., Sharp H., Hille K., Seibt U., Ficher J., Pfeifer Y., Michael G.B., Nickel S., Schmiedel J., Falgenhauer L., Friese A., Bauerfeind R., Roesler U., Imirzalioglu C., Chakraborty T., Helmuth R., Valenza G., Werner G., Schwarz S., Guerra B., Appel B., Kreienbrock L., Kasbohrer A. Subgrouping of ESBL-producing Escherichia coli from animal and human sources: an approach to quantify the distribution of ESBL types between different reservoirs. Int. J. Med. Microbiol. 2014, 304:805-816.
33. CTX-M-1 between commensal Escherichia coli in pigs and farm workers. Antimicrob. Agents Chemother. 2009, 53:1709-1711.
34. CTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans. J. Antimicrob. Chemother. 2013, 68:333-339.
35. Gordon D.M., Cowling A. The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects. Microbiology 2013, 149:3575-3586.
36. Baldy-Chudzik K., Mackiewicz P., Stosik M. Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo. Vet. Microbiol. 2008, 131:173-184.
37. Carlos C., Pires M.M., Stoppe N.C., Hachich E.M., Sato M.I., Gomez T.A., Amaral L.A., Ottoboni L.M. Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination. BMC Microbiol. 2010, 10:161.
38. Cao X., Zhang Z., Shen H., Ning M., Chen J., Wei H., Zhang K. Genotypic characteristics of multidrug-resistant Escherichia coli isolates associated with urinary tract infections. APMIS 2014, 122:1088-1095.
39. Liu Z., Li W., Wang J., Pan J., Sun S., Yu Y., Zhao B., Ma Y., Zhang T., Qi J., Liu G., Lu F. Identification and characterization of the first Escherichia coli strain carrying NDM-1 gene in China. PLoS ONE 2013, 10.1371.
40. Ruiz-Garbajosa P., Curiao T., Tato M., Gijón D., Pintado V., Valverde A., Baquero F., Morosini M.I., Coque T.M., Cantón R. Multiclonal dispersal of KPC genes following the emergence of non-ST258 KPC-producing Klebsiella pneumoniae clones in Madrid, Spain. J. Antimicrob. Chemother. 2013, 68:2487-2492.
41. Dahmen S., Haenni M., Châtre P., Madec J.Y. Characterization of blaCTX-M IncFII plasmids and clones of Escherichia coli from pets in France. J. Antimicrob. Chemother. 2013, 68:2797-2801.
42. Simões R.R., Poirel L., Da Costa P.M., Nordmann P. Seagulls and beaches as reservoirs for multidrug-resistant Escherichia coli. Emerg. Infect. Dis. 2010, 16:110-112.
43. Aizawa J., Neuwirt N., Barbato L., Neves P.R., Leique L., Padilha J., Pestana de Castro A.F., Gregory L., Lincopan N. Identification of fluoroquinolone-resistant extended-spectrum β-lactamase (CTX-M-8)-producing Escherichia coli ST224, ST2179 and ST2308 in buffalo (Bubalus bubalis). J. Antimicrob. Chemother. 2014, 69:2866-2869.