FaRXf1: a locus conferring resistance to angular leaf spot caused by Xanthomonas fragariae in octoploid strawberry

Theoretical and Applied Genetics

Volumn 129, Issue 6, 2016, Pages 1191-1201

  Roach, Jack A ^a   Verma, Sujeet ^a   Peres, Natalia A ^a   Jamieson, Andrew R ^b   van de Weg, W Eric ^c   Bink, Marco C A M ^c   Bassil, Nahla V ^d   Lee, Seonghee ^a   Whitaker, Vance M ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b Agriculture and Agri Food Canada ^*  (Canada)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d USDA ARS National Clonal Germplasm Repository   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CULTIVATION;

ANNUAL PRODUCTION; BACTERIAL DISEASE; COMMERCIAL QUALITIES; INHERITANCE MODEL; INOCULATED PLANTS; MARKER-ASSISTED SELECTION; RESISTANT CULTIVARS; SELECTIVE GENOTYPING;

FRUITS;

GENETIC MARKER; PLANT DNA;

CHROMOSOMAL MAPPING; DISEASE RESISTANCE; FRAGARIA; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOTYPE; HAPLOTYPE; MICROBIOLOGY; PEDIGREE; PHENOTYPE; PLANT DISEASE; POLYPLOIDY; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; XANTHOMONAS;

CHROMOSOME MAPPING; DISEASE RESISTANCE; DNA, PLANT; FRAGARIA; GENETIC LINKAGE; GENETIC MARKERS; GENOTYPE; HAPLOTYPES; PEDIGREE; PHENOTYPE; PLANT DISEASES; POLYMORPHISM, SINGLE NUCLEOTIDE; POLYPLOIDY; QUANTITATIVE TRAIT LOCI; XANTHOMONAS;

EID: 84959084864     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-016-2695-1     Document Type: Article

References (43)

1. ® SNP array for the allo-octoploid cultivated strawberry Fragaria ×ananassa. BMC Genom 16:155
2. Bink MCAM, Uimari P, Sillanpaa J, Janss LLG, Jansen RC (2002) Multiple QTL mapping in related plant populations via a pedigree-analysis approach. Theor Appl Genet 104:751–762
3. Bink MCAM, Boer MP, ter Braak CJF, Jansen J, Voorrips RE, van de Weg WE (2008) Bayesian analysis of complex traits in pedigreed plant populations. Euphytica 161:85–96
4. Bink MCAM, Jansen J, Madduri M, Voorrips RE, Durel CE, Kouassi AB, Laurens F, Mathis F, Gessler C, Gobbin D, Rezzonico F, Patocchi A, Kellerhals M, Boudichevskaia A, Dunemann F, Peil A, Nowicka A, Lata B, Stankiewicz-Kosyl M, Jeziorek K, Pitera E, Soska A, Tomala K, Evans KM, Fernandez-Fernandez F, Guerra W, Korbin M, Keller S, Lewandowski M, Plocharski W (2014) Baysian QTL analyses using pedigreed families of an outcrossing species, with application to fruit firmness in apple. Theor Appl Genet 127:1073–1090
5. CABI/EPPO (1997) Quarantine pests for Europe. Smith IM, McNamara DG, Scott PR, Holderness M (eds), 2nd edn. CABI International, Wallingford
6. Clark MD, Schmitz CA, Rosyara UR, Luby JJ, Bradeen JM (2014) A consensus ‘Honeycrisp’ apple (Malus × domestica) genetic linkage map from three full-sib progeny populations. Tree Genet Genomes 10:627–639
7. Darvasi A, Soller M (1992) Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theor Appl Genet 85:353–359
8. de Mendiburu F (2010) Agricolae: statistical procedures for agricultural research using R (Online) http://tarwi.lamolina.edu.pe/~fmendiburu/. Accessed date 16 Oct 2015
9. Epstein AH (1966) Angular leaf spot of strawberry. Plant Dis Report 50:167
10. Guan Y, Peace C, Rudell Dm Verma S, Even K (2015) QTLs detected for individual sugars and soluble solids content in apple. Mol Breed 35:135
11. Hartung JS, Gouin CC, Lewers KS, Maas JL, Hokanson S (2003) Identification of sources of resistance to bacterial angular leafspot disease of strawberry. Acta Hortic 626:155–159
12. Haymes KM (1996) Mini-prep method suitable for a plant breeding program. Plant Mol Biol Report 14:280–284
13. Hildebrand PD, Braun PG, Renderos WE, Jamieson AR, McRae KB, Binns MR (2005) A quantitative method for inoculating strawberry leaves with Xanthomonasfragariae, factors affecting infection, and cultivar reactions. Can J Plant Pathol 27:16–24
14. Jamieson AR, Hildebrand PD, Renderos WE (2013) Breeding strawberry plants resistant to angular leaf spot disease. Int J Fruit Sci 13:28–35
15. Jamieson AR, Hildebrand PD, Renderos WE, Fillmore SAE (2014) Resistance to angular leafspot disease of strawberry: influence of seedling age. Acta Hortic 1049:187–192
16. Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Mentjies P, Drummond A (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649
17. Kennedy BW, King TH (1960) Angular leafspot, a new disease of strawberry. Phytopathology 50:641–642
18. Kennedy BW, King TH (1962a) Angular leaf spot of strawberry caused by Xanthomonasfragariae sp. nov. Phytopathology 52:873–875
19. Kennedy BW, King TH (1962b) Studies on epidemiology of bacterial angular leafspot on strawberry. Plant Dis Report 46:360–363
20. Koike H (1965) The aluminum-cap method for testing sugarcane varieties against leaf scald disease. Phytopathology 55:317–319
21. Lebowitz RJ, Soller M, Beckmann JS (1987) Trait-based analyses for the detection of linkage between marker loci and quantitative trait loci in crosses between inbred lines. Theor Appl Genet 73:556–562
22. Lewers KS, Maas JL, Hokanson SC, Gouin C, Hartung JS (2003) Inheritance of resistance in strawberry to bacterial angular leafspot disease caused by Xanthomonasfragariae. J Amer Soc Hortic Sci 128:209–212
23. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079
24. Maas JL (1984) Compendium of strawberry diseases. American Phytopathological Society, St. Paul
25. Maas JL, Gouin-Behe C, Hartung JS, Hokanson SC (2000) Sources of resistance for two differentially pathogenic strains of Xanthomonasfragariae in Fragaria genotypes. HortScience 35:128–131
26. Maas JL, Gouin CC, Hokanson SC, Hartung JS (2002) Strawberry parent clones US 4808 and US 4809 resistant to bacterial angular leafspot disease caused by Xanthomonasfragariae. HortScience 37:716–717
27. Mertely J, Seijo T, Martin R, Moore DN, Peres NA (2010) Evaluation of products for angular leaf spot control in annual strawberry, 2009–10. Plant Dis Manag Rep 4:SMF052
28. R Core Team (2013) R: a language and environment for statistical computer. R Foundation for Statistical Computing, Vienna. http://www.R-project.org. Accessed 15 Mar 2015
29. Pooler MR, Ritchie DF, Hartung JS (1996) Genetic relationships among strains of Xanthomonasfragariae based on random amplified polymorphic DNA PCR, repetitive extragenic palindromic PCR, and enterobacterial repetitive intergenic consensus PCR data and generation of multiplexed PCR primers useful for identification of this phytopathogen. Appl Environ Microbiol 62:3121–3127
30. Roberts PD, Jones JB, Chandler CK, Stall RE, Berger RE (1996) Survival of Xanthomonasfragariae on strawberry in summer nurseries in Florida detected by specific primers and nested polymerase chain reaction. Plant Dis 80:1283–1288
31. Roberts PD, Berger RD, Jones JB, Chandler CK, Stall RE (1997) Disease progress, yield loss, and control of Xanthomonasfragariae on strawberry plants. Plant Dis 81:917–921
32. Roberts PD, Hodge NC, Bouzar H, Jones JB, Stall RE, Berger RD, Chase AR (1998) Relatedness of strains of Xanthomonasfragariae by restriction fragment length polymorphism, DNA-DNA reassociation, and fatty acid analyses. Appl Environ Microbiol 64:3961–3965
33. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365–386
34. Seijo T, Mertely J, Whitaker VM, Peres NA (2012) Evaluation of strawberry cultivars and advanced selections for resistance to anthracnose and Botrytis fruit rots and angular leaf spot, 2011–12. Plant Dis Manag Rep 6:SMF034
35. Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM (2011) The genome of woodland strawberry (Fragaria vesca). Nat Genet 43:109–116
36. Tennessen JA, Govindarajulu R, Ashman T-L, Liston A (2014) Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps. Genome Biol Evol 6:3295–3313
37. Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG (2012) Primer3—new capabilities and interfaces. Nucl Acids Res 40:e115
38. Van Ooijen JW (2006) JoinMap 4, software for the calculation of genetic linkage maps in experimental populations. Wageningen, Kyazma BV
39. Van Ooijen JW (2011) Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. Genet Res 93:343–349
40. Welz HG, Schechert A, Pernet A, Pixley KV, Geiger HH (1998) A gene for resistance to the maize streak virus in the African CIMMYT maize inbred line CML202. Mol Breed 4:147–154
41. Whitaker VM, Chandler CK, Peres N, do Nascimento Nunes MC, Plotto A, Sims CA, Plotto A, Sims CA (2015) Sensation™ ‘Florida127’ strawberry. HortScience 50:1088–1091
42. Wu TD, Nacu S (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26:873–881
43. Wu TD, Watanabe CK (2005) GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21:1859–1875