Genetic relationships among strains of Xanthomonas fragariae based on random amplified polymorphic DNA PCR, repetitive extragenic palindromic PCR, and enterobacterial repetitive intergenic consensus PCR data and generation of multiplexed PCR primers useful for the identification of this phytopathogen

Applied and Environmental Microbiology

Volumn 62, Issue 9, 1996, Pages 3121-3127

  Pooler, Margaret R ^a,c   Ritchie, David F ^b   Hartung, John S ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c US National Arboretum   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PALINDROMIC DNA; PRIMER DNA;

AGRICULTURE; ARTICLE; BACTERIAL GENETICS; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONSENSUS SEQUENCE; ENTEROBACTERIACEAE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHY; NONHUMAN; PATHOGENICITY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; XANTHOMONAS;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; XANTHOMONAS FRAGARIAE;

EID: 0029829244     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.62.9.3121-3127.1996     Document Type: Article

References (36)

1. Akopyanz, N., N. O. Bukanov, T. U. Westblom, S. Kresovich, and D. E. Berg. 1992. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res. 20:5137-5142.
2. Barry, T., G. Colleran, M. Glennon, L. K. Dunican, and F. Gannon. 1991. The 16s/23s ribosomal spacer region as a target for DNA probes to identify eubactcria. PCR Methods Appl. 1:51-56.
3. Chamberlain, J. S., R. A. Gibbs, J. E. Ranier, and C. T. Caskey. 1992. Multiplex PCR for the diagnosis of Duchenne muscular dystrophy, p. 272-281. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), PCR protocols. Academic Press, Inc., San Diego, Calif.
4. Crowhurst, R. N., B. T. Hawthorne, E. H. A. Rikkerink, and M. D. Templeton. 1991. Differention of Fusarium solani f. sp. cucurbitae races 1 and 2 by random amplification of polymorphic DNA. Curr. Genet. 20:391-396.
5. de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58:2180-2187.
6. European and Mediterranean Plant Protection Organization. 1992. Quarantine pests for Europe, p. 829-833. Commonwealth Agricultural Bureau International, Wallingford, Great Britain.
7. Hadidi, A., L. Levy, and E. V. Podleckis. 1994. Polymerase chain reaction technology in plant pathology, p. 167-187. In R. P. Singh and U. S. Singh (ed.), Molecular methods in plant pathology. CRC Press, Inc., Boca Raton, Fla.
8. Hartung, J. S. 1992. Plasmid-based hybridization probes for detection and identification of Xanthomonas campestris pv. citri. Plant Dis. 76:889-893.
9. Hartung, J. S., and E. L. Civerolo. 1989. Restriction fragment length polymorphisms distinguish Xanthomonas campestris strains isolated from Florida citrus nurseries from X.c. pv citri. Phytopathology 79:793-799.
10. Hartung, J. S., O. P. Pruvost, I. Villemot, and A. Alvarez. 1996. Rapid and sensitive colorimetric detection of Xanthomonas axonopodis pv. citri by immunocapture and a nested polymerase chain reaction assay. Phytopathology 86:95-101.
11. Hayward, A. C. 1960. A method for characterizing Pseudomonas solanacearum. Nature (London) 186:405-406.
12. Henson, J. M., and R. French. 1993. The polymerase chain reaction and plant disease diagnosis. Annu. Rev. Phytopathol. 31:81-109.
13. Hulton, C. S. J., C. F. Higgins, and P. M. Sharp. 1991. ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enteric bacteria. Mol. Microbiol. 5:825-834.
14. Iezzoni, A. F., and M. P. Pritts. 1991. Applications of principal component analysis to horticultural research. Hortscience 26:334-338.
15. Jacobsen, C. S. 1995. Microscale detection of specific bacterial DNA in soil with a magnetic capture-hybridization and PCR amplification assay. Appl. Environ. Microbiol. 61:3347-3352.
16. Kennedy, B. W., and T. H. King. 1962. Angular leaf spot of strawberry caused by Xanthomonas fragariae sp. nov. Phytopathology 52:873-875.
17. Klement, Z., K. Rudolph, and D. C. Sands. 1990. Methods in phytobacteriology. Akademiai Kiado, Budapest, Hungary.
18. Lawrence, L. M., J. Harvey, and A. Gilmore. 1993. Development of a random amplification of polymorphic DNA typing method for Listeria monocytogenes. Appl. Environ. Microbiol. 59:3117-3119.
19. Louws, F. J., D. W. Fulbright, C. T. Stephens, and F. J. de Bruijn. 1994. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 60:2286-2295.
20. Louws, F. J., D. W. Fulbright, C. T. Stephens, and F. J. de Bruijn. 1995. Differentiation of genomic structure by rep-PCR fingerprinting to rapidly classify Xanthomonas campestris pv. vesicatoria. Phytopathology 85:528-536.
21. Maas, J. L., M. R. Pooler, and G. J. Galletta. 1995. Bacterial angular leafspot disease of strawberry: present status and prospects for control. Adv. Strawberry Res. 14:18-24.
22. Manulis, S., L. Valinsky, A. Lichter, and D. W. Gabriel. 1994. Sensitive and specific detection of Xanthomonas campestris pv. pelargonii with DNA primers and probes identified by random amplified polymorphic DNA analysis. Appl. Environ. Microbiol. 60:4094-4099.
23. Organisation Européenne et Méditerranéene de Protection des Plantes. 1990. Specific quarantine requirements. European and Mediterranean Plant Protection Organization (EPPO) Technical Document no. 1008. EPPO, Paris.
24. Organisation Européenne et Méditerranéene de Protection des Plantes. 1994. Phytosanitary procedure. EPPO (Eur. Mediterr. Plant Prot. Organ.) Bull. 24:343-346.
25. Pooler, M. R., and J. S. Hartung. 1995. Genetic relationships among strains of Xylella fastidiosa from RAPD-PCR data. Curr. Microbiol. 31:134-137.
26. Pooler, M. R., and J. S. Hartung. 1995. Specific PCR detection and identification of Xylella fastidiosa strains causing citrus variegated chlorosis. Curr. Microbiol. 31:377-381.
27. 26a. Ritchie, D. F. Unpublished data.
28. Roberts, P. D., R. D. Berger, J. B. Jones, and C. K. Chandler. 1995. Epidemiology of Xanthomonas fragariae on strawberry: yield loss and disease management. Phytopathology 85:1172. (Abstract.)
29. Roberts, P. D., J. B. Jones, R. E. Stall, and R. D. Berger. 1995. Detection of Xamhomonas fragariae by amplification of a region related to the hrp genes. Phytopathology 85:1121. (Abstract.)
30. Rohlf, F. J. 1992. NTSYS-pc numerical taxonomy and multivariate analysis system, version 1.70. Exeter Publishing, Ltd., Setauket, N.Y.
31. SAS Institute. 1987. Software release 6.04. SAS Institute, Cary, N.C.
32. Schaad, N. W. 1980. Laboratory guide for the identification of plant pathogenic bacteria. The American Phytopathological Society, St. Paul, Minn.
33. Stall, R. E., C. Beaulieu, D. Egel, N. C. Hodge, R. P. Leite, G. V. Minsavage, H. Bouzar, J. B. Jones, A. M. Alvarez, and A. A. Benedict. 1994. Two genetically diverse groups of strains are included in Xanthomonas campestris pv. vesicatoria. Int. J. Syst. Bacteriol. 44:47-53.
34. Stern, M. J., G. F. L. Ames, N. H. Smith, E. C. Robinson, and C. F. Higgins. 1984. Repetitive extragenic palindromic sequences: a major component of the bacterial genome. Cell 37:1015-1026.
35. Versalovic, J., T. Koeuth, and J. R. Lupski. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831.
36. Williams, J. G. K., A. R. Kubilik, K. J. Livak, J. A. Rafalski, and S. V. Tingey. 1991. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6535.