메뉴 건너뛰기




Volumn 283, Issue 4, 2016, Pages 694-703

Structural basis for dimer formation of the CRISPR-associated protein Csm2 of Thermotoga maritima

Author keywords

Cd SAD; CRISPR Cas; crRNP; Csm2; Thermotoga maritima

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; CADMIUM; CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN; CRISPR ASSOCIATED PROTEIN; PROTEIN CSM2; RNA; UNCLASSIFIED DRUG; MESSENGER RNA;

EID: 84958914834     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.13621     Document Type: Article
Times cited : (6)

References (49)
  • 1
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J, &, Soria E, (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 60, 174-182.
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 2
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A, Quinquis B, Sorokin A, &, Ehrlich SD, (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 2551-2561.
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 3
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • Pourcel C, Salvignol G, &, Vergnaud G, (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653-663.
    • (2005) Microbiology , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 4
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova KS, Grishin NV, Shabalina SA, Wolf YI, &, Koonin EV, (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 1, 7.
    • (2006) Biol Direct , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 6
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, &, Sontheimer EJ, (2008) CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322, 1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 9
    • 66349134987 scopus 로고    scopus 로고
    • Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
    • Wiedenheft B, Zhou K, Jinek M, Coyle SM, Ma W, &, Doudna JA, (2009) Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 17, 904-912.
    • (2009) Structure , vol.17 , pp. 904-912
    • Wiedenheft, B.1    Zhou, K.2    Jinek, M.3    Coyle, S.M.4    Ma, W.5    Doudna, J.A.6
  • 10
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini LA, &, Sontheimer EJ, (2010) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 11, 181-190.
    • (2010) Nat Rev Genet , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 11
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa I, Vergnaud G, &, Pourcel C, (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8, 172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 12
    • 79960554003 scopus 로고    scopus 로고
    • Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
    • Makarova KS, Aravind L, Wolf YI, &, Koonin EV, (2011) Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. Biol Direct 6, 38.
    • (2011) Biol Direct , vol.6 , pp. 38
    • Makarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 15
    • 79953779608 scopus 로고    scopus 로고
    • Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
    • Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, &, Siksnys V, (2011) Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 30, 1335-1342.
    • (2011) EMBO J , vol.30 , pp. 1335-1342
    • Sinkunas, T.1    Gasiunas, G.2    Fremaux, C.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 16
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas G, Barrangou R, Horvath P, &, Siksnys V, (2012) Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA 109, E2579-2586.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. E2579-E2586
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 25
    • 84908445494 scopus 로고    scopus 로고
    • Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli
    • Zhao H, Sheng G, Wang J, Wang M, Bunkoczi G, Gong W, Wei Z, &, Wang Y, (2014) Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli. Nature 515, 147-150.
    • (2014) Nature , vol.515 , pp. 147-150
    • Zhao, H.1    Sheng, G.2    Wang, J.3    Wang, M.4    Bunkoczi, G.5    Gong, W.6    Wei, Z.7    Wang, Y.8
  • 26
    • 84907204893 scopus 로고    scopus 로고
    • Structural biology. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target
    • Mulepati S, Heroux A, &, Bailey S, (2014) Structural biology. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target. Science 345, 1479-1484.
    • (2014) Science , vol.345 , pp. 1479-1484
    • Mulepati, S.1    Heroux, A.2    Bailey, S.3
  • 27
    • 84928925211 scopus 로고    scopus 로고
    • Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog
    • Osawa T, Inanaga H, Sato C, &, Numata T, (2015) Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog. Mol Cell 58, 418-430.
    • (2015) Mol Cell , vol.58 , pp. 418-430
    • Osawa, T.1    Inanaga, H.2    Sato, C.3    Numata, T.4
  • 33
    • 79958754524 scopus 로고    scopus 로고
    • Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
    • Lintner NG, Kerou M, Brumfield SK, Graham S, Liu H, Naismith JH, Sdano M, Peng N, She Q, Copie V, et al,. (2011) Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J Biol Chem 286, 21643-21656.
    • (2011) J Biol Chem , vol.286 , pp. 21643-21656
    • Lintner, N.G.1    Kerou, M.2    Brumfield, S.K.3    Graham, S.4    Liu, H.5    Naismith, J.H.6    Sdano, M.7    Peng, N.8    She, Q.9    Copie, V.10
  • 34
    • 80052400382 scopus 로고    scopus 로고
    • Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3)
    • Mulepati S, &, Bailey S, (2011) Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3). J Biol Chem 286, 31896-31903.
    • (2011) J Biol Chem , vol.286 , pp. 31896-31903
    • Mulepati, S.1    Bailey, S.2
  • 35
    • 84879584456 scopus 로고    scopus 로고
    • CRISPR interference: a structural perspective
    • Reeks J, Naismith JH, &, White MF, (2013) CRISPR interference: a structural perspective. Biochem J 453, 155-166.
    • (2013) Biochem J , vol.453 , pp. 155-166
    • Reeks, J.1    Naismith, J.H.2    White, M.F.3
  • 36
    • 84884765703 scopus 로고    scopus 로고
    • A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs
    • Hatoum-Aslan A, Samai P, Maniv I, Jiang W, &, Marraffini LA, (2013) A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs. J Biol Chem 288, 27888-27897.
    • (2013) J Biol Chem , vol.288 , pp. 27888-27897
    • Hatoum-Aslan, A.1    Samai, P.2    Maniv, I.3    Jiang, W.4    Marraffini, L.A.5
  • 37
    • 84873894991 scopus 로고    scopus 로고
    • Local conformational changes in the DNA interfaces of proteins
    • Sunami T, &, Kono H, (2013) Local conformational changes in the DNA interfaces of proteins. PLoS One 8, e56080.
    • (2013) PLoS One , vol.8
    • Sunami, T.1    Kono, H.2
  • 39
    • 34250348569 scopus 로고    scopus 로고
    • A combined approach to improving large-scale production of tobacco etch virus protease
    • Blommel PG, &, Fox BG, (2007) A combined approach to improving large-scale production of tobacco etch virus protease. Protein Expr Purif 55, 53-68.
    • (2007) Protein Expr Purif , vol.55 , pp. 53-68
    • Blommel, P.G.1    Fox, B.G.2
  • 45
    • 37049014272 scopus 로고    scopus 로고
    • Version 1.2 of the Crystallography and NMR system
    • Brunger AT, (2007) Version 1.2 of the Crystallography and NMR system. Nat Protoc 2, 2728-2733.
    • (2007) Nat Protoc , vol.2 , pp. 2728-2733
    • Brunger, A.T.1
  • 48
  • 49
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel E, &, Henrick K, (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372, 774-797.
    • (2007) J Mol Biol , vol.372 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.