메뉴 건너뛰기




Volumn 6, Issue 2, 2016, Pages

Requirements for the formal representation of pathophysiology mechanisms by clinicians

Author keywords

Clinical community; Disease mechanism modeling; Knowledge management; Pathophysiology; Physiome community

Indexed keywords


EID: 84958787228     PISSN: 20428898     EISSN: 20428901     Source Type: Journal    
DOI: 10.1098/rsfs.2015.0099     Document Type: Article
Times cited : (3)

References (36)
  • 2
    • 84883251301 scopus 로고    scopus 로고
    • Supporting SBML as a model exchange format in software applications. Methods Mol
    • Keating SM, Le Novère N. 2013 Supporting SBML as a model exchange format in software applications. Methods Mol. Biol. 1021, 201–225. (doi:10.1007/978-1-62703-450-0-11)
    • (2013) Biol , vol.1021 , pp. 201-225
    • Keating, S.M.1    Le Novère, N.2
  • 3
    • 84955289509 scopus 로고    scopus 로고
    • A stochastic polygons model for glandular structures in colon histology images
    • Sirinukunwattana K, Snead D, Rajpoot N. 2015 A stochastic polygons model for glandular structures in colon histology images. IEEE Trans. Med. Imaging. 34, 2366–2378. (doi:10.1109/TMI.2015.2433900)
    • (2015) IEEE Trans. Med. Imaging , vol.34 , pp. 2366-2378
    • Sirinukunwattana, K.1    Snead, D.2    Rajpoot, N.3
  • 4
    • 79961177806 scopus 로고    scopus 로고
    • The Cardiac Atlas Project—an imaging database for computational modeling and statistical atlases of the heart
    • Fonseca CG et al. 2011 The Cardiac Atlas Project—an imaging database for computational modeling and statistical atlases of the heart. Bioinformatics 27, 2288–2295. (doi:10.1093/bioinformatics/btr360)
    • (2011) Bioinformatics , vol.27 , pp. 2288-2295
    • Fonseca, C.G.1
  • 7
    • 84876560358 scopus 로고    scopus 로고
    • The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013
    • Hastings J et al. 2013 The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res. 41, D456–D463. (doi:10.1093/nar/gks1146)
    • (2013) Nucleic Acids Res , vol.41
    • Hastings, J.1
  • 8
    • 84874253819 scopus 로고    scopus 로고
    • Gene ontology annotations and resources
    • Gene Ontology Consortium
    • Gene Ontology Consortium. 2013 Gene ontology annotations and resources. Nucleic Acids Res. 41, D530–D535. (doi:10.1093/nar/gks1050)
    • (2013) Nucleic Acids Res , vol.41
  • 9
    • 84875859773 scopus 로고    scopus 로고
    • Application of a physiologically based pharmacokinetic model to assess propofol hepatic and renal glucuronidation in isolation: Utility of in vitro and in vivo data
    • Gill KL, Gertz M, Houston JB, Galetin A. 2013 Application of a physiologically based pharmacokinetic model to assess propofol hepatic and renal glucuronidation in isolation: utility of in vitro and in vivo data. Drug Metab. Dispos. Biol. Fate Chem. 41, 744–753. (doi:10.1124/dmd.112.050294)
    • (2013) Drug Metab. Dispos. Biol. Fate Chem , vol.41 , pp. 744-753
    • Gill, K.L.1    Gertz, M.2    Houston, J.B.3    Galetin, A.4
  • 10
    • 84904893896 scopus 로고    scopus 로고
    • A physiologically based pharmacokinetic model for valproic acid in adults and children
    • CRESim & Epi-CRESim Project Groups
    • Ogungbenro K, Aarons L, CRESim & Epi-CRESim Project Groups. 2014 A physiologically based pharmacokinetic model for valproic acid in adults and children. Eur. J. Pharm. Sci. 63, 45–52. (doi:10.1016/j.ejps.2014.06.023)
    • (2014) Eur. J. Pharm. Sci , vol.63 , pp. 45-52
    • Ogungbenro, K.1    Aarons, L.2
  • 11
    • 34249056589 scopus 로고    scopus 로고
    • A physiologically based pharmacokinetic model of docetaxel disposition: From mouse to man
    • Bradshaw-Pierce EL, Eckhardt SG, Gustafson DL. 2007 A physiologically based pharmacokinetic model of docetaxel disposition: from mouse to man. Clin. Cancer Res. 13, 2768–2776. (doi:10.1158/1078-0432.CCR-06-2362)
    • (2007) Clin. Cancer Res , vol.13 , pp. 2768-2776
    • Bradshaw-Pierce, E.L.1    Eckhardt, S.G.2    Gustafson, D.L.3
  • 12
    • 78651339534 scopus 로고    scopus 로고
    • NCBI GEO: Archive for functional genomics data sets—10 years on
    • Barrett T et al. 2011 NCBI GEO: archive for functional genomics data sets—10 years on. Nucleic Acids Res. 39, D1005–D1010. (doi:10.1093/nar/gkq1184)
    • (2011) Nucleic Acids Res , vol.39
    • Barrett, T.1
  • 13
    • 35348860160 scopus 로고    scopus 로고
    • Modeling gastrointestinal drug absorption requires more in vivo biopharmaceutical data: Experience from in vivo dissolution and permeability studies in humans
    • Lennernäs H. 2007 Modeling gastrointestinal drug absorption requires more in vivo biopharmaceutical data: experience from in vivo dissolution and permeability studies in humans. Curr. Drug Metab. 8, 645–657. (doi:10.2174/138920007782109823)
    • (2007) Curr. Drug Metab , vol.8 , pp. 645-657
    • Lennernäs, H.1
  • 14
    • 0041856526 scopus 로고    scopus 로고
    • Application of compartmental modeling to an examination of in vitro intestinal permeability data: Assessing the impact of tissue uptake, Pglycoprotein, and CYP3
    • Johnson BM, Charman WN, Porter CJH. 2003 Application of compartmental modeling to an examination of in vitro intestinal permeability data: assessing the impact of tissue uptake, Pglycoprotein, and CYP3A. Drug Metab. Dispos. Biol. Fate Chem. 31, 1151–1160. (doi:10.1124/dmd.31.9.1151)
    • (2003) Drug Metab. Dispos. Biol. Fate Chem , vol.31 , pp. 1151-1160
    • Johnson, B.M.1    Charman, W.N.2    Porter, C.J.H.3
  • 15
    • 33846435723 scopus 로고    scopus 로고
    • Diabetic cardiovascular autonomic neuropathy
    • Vinik AI, Ziegler D. 2007 Diabetic cardiovascular autonomic neuropathy. Circulation 115, 387–397. (doi:10.1161/CIRCULATIONAHA.106.634949)
    • (2007) Circulation , vol.115 , pp. 387-397
    • Vinik, A.I.1    Ziegler, D.2
  • 16
    • 84863449162 scopus 로고    scopus 로고
    • Effect of diabetes mellitus on pharmacokinetic and pharmacodynamic properties of drugs
    • Dostalek M, Akhlaghi F, Puzanovova M. 2012 Effect of diabetes mellitus on pharmacokinetic and pharmacodynamic properties of drugs. Clin. Pharmacokinet. 51, 481–499. (doi:10.1007/BF03261926)
    • (2012) Clin. Pharmacokinet , vol.51 , pp. 481-499
    • Dostalek, M.1    Akhlaghi, F.2    Puzanovova, M.3
  • 17
    • 79951986255 scopus 로고    scopus 로고
    • The physiome model repository 2
    • Yu T et al. 2011 The physiome model repository 2. Bioinformatics 27, 743–744. (doi:10.1093/bioinformatics/btq723)
    • (2011) Bioinformatics , vol.27 , pp. 743-744
    • Yu, T.1
  • 19
    • 0017799724 scopus 로고
    • Contribution of cardiopulmonary baroreceptors to the control of the kidney
    • Thames MD. 1978 Contribution of cardiopulmonary baroreceptors to the control of the kidney. Fed. Proc. 37, 1209–1213.
    • (1978) Fed. Proc , vol.37 , pp. 1209-1213
    • Thames, M.D.1
  • 20
    • 0015264958 scopus 로고
    • Circulation: Overall regulation. Annu
    • Guyton AC, Coleman TG, Granger HJ. 1972 Circulation: overall regulation. Annu. Rev. Physiol. 34, 13–46. (doi:10.1146/annurev.ph.34.030172.000305)
    • (1972) Rev. Physiol , vol.34 , pp. 13-46
    • Guyton, A.C.1    Coleman, T.G.2    Granger, H.J.3
  • 21
  • 23
    • 14944348969 scopus 로고    scopus 로고
    • A role for the paraventricular nucleus of the hypothalamus in the autonomic control of heart and kidney
    • Coote JH. 2005 A role for the paraventricular nucleus of the hypothalamus in the autonomic control of heart and kidney. Exp. Physiol. 90, 169–173. (doi:10.1113/expphysiol.2004.029041)
    • (2005) Exp. Physiol , vol.90 , pp. 169-173
    • Coote, J.H.1
  • 24
    • 1642564326 scopus 로고    scopus 로고
    • Dual viral transneuronal tracing of central autonomic circuits involved in the innervation of the two kidneys in rat
    • Cano G, Card JP, Sved AF. 2004 Dual viral transneuronal tracing of central autonomic circuits involved in the innervation of the two kidneys in rat. J. Comp. Neurol. 471, 462–481. (doi:10.1002/cne.20040)
    • (2004) J. Comp. Neurol , vol.471 , pp. 462-481
    • Cano, G.1    Card, J.P.2    Sved, A.F.3
  • 25
    • 84941600946 scopus 로고    scopus 로고
    • Does stone removal help patients with recurrent urinary tract infections
    • Omar M, Abdulwahab-Ahmed A, Chaparala H, Monga M. 2015 Does stone removal help patients with recurrent urinary tract infections? J. Urol. 194, 997–1001. (doi:10.1016/j.juro.2015.04.096)
    • (2015) J. Urol , vol.194 , pp. 997-1001
    • Omar, M.1    Abdulwahab-Ahmed, A.2    Chaparala, H.3    Monga, M.4
  • 26
    • 0007787231 scopus 로고
    • Mechanism of hydronephrosis: Newer investigative techniques
    • Persky L, Storaasli JP, Austen G. 1954 Mechanism of hydronephrosis: newer investigative techniques. J. Urol. 73, 740–746.
    • (1954) J. Urol , vol.73 , pp. 740-746
    • Persky, L.1    Storaasli, J.P.2    Austen, G.3
  • 27
    • 84926430685 scopus 로고    scopus 로고
    • The Open Physiology workflow: Modeling processes over physiology circuitboards of interoperable tissue units
    • de Bono B et al. 2015 The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units. Front. Physiol. 6, 24. (doi:10.3389/fphys.2015.00024)
    • (2015) Front. Physiol , vol.6
    • De Bono, B.1
  • 28
    • 0842283371 scopus 로고    scopus 로고
    • A reference ontology for biomedical informatics: The foundational model of anatomy
    • Rosse C, Mejino Jr JLV. 2003 A reference ontology for biomedical informatics: the foundational model of anatomy. J. Biomed. Inform. 36, 478–500. (doi:10.1016/j.jbi.2003.11.007)
    • (2003) J. Biomed. Inform , vol.36 , pp. 478-500
    • Rosse, C.1    Mejino, J.L.V.2
  • 29
  • 30
    • 0037805574 scopus 로고    scopus 로고
    • On ontologies for biologists: The gene ontology—untangling the web
    • Ashburner M, Lewis S. 2002 On ontologies for biologists: the gene ontology—untangling the web. Novartis Found. Symp. 247, 66–80; discussion 80–3, 84–90, 244–52. (doi:10.1002/0470857897.ch6)
    • (2002) Novartis Found. Symp , vol.247 , pp. 66-80
    • Ashburner, M.1    Lewis, S.2
  • 31
    • 33846928769 scopus 로고    scopus 로고
    • A bond graph approach to the modeling of fluid–solid interaction in cardiovascular system’s pulsatile flow
    • Shanghai, China, 17–18 January
    • Zadpoor A, Arshi A, Nikooyan A. 2005 A bond graph approach to the modeling of fluid–solid interaction in cardiovascular system’s pulsatile flow. In 27th Annual Int. Conf. of the Engineering in Medicine and Biology Society, Shanghai, China, 17–18 January 2006, pp. 2319–2322. (doi:10.1109/IEMBS.2005.1616930)
    • (2005) 27Th Annual Int. Conf. Of the Engineering in Medicine and Biology Society , pp. 2319-2322
    • Zadpoor, A.1    Arshi, A.2    Nikooyan, A.3
  • 33
    • 42649105450 scopus 로고    scopus 로고
    • The role of the autonomic nervous system in hypertension: A bond graphmodel study
    • Chen S, Zhang S, Gong Y, Dai K, Sui M, Yu Y, Ning G. 2008 The role of the autonomic nervous system in hypertension: a bond graphmodel study. Physiol. Meas. 29, 473–495. (doi:10.1088/0967-3334/29/4/005)
    • (2008) Physiol. Meas , vol.29 , pp. 473-495
    • Chen, S.1    Zhang, S.2    Gong, Y.3    Dai, K.4    Sui, M.5    Yu, Y.6    Ning, G.7
  • 34
    • 84956869231 scopus 로고    scopus 로고
    • Energy-based analysis of biochemical cycles using bond graphs
    • Gawthrop PJ, Crampin EJ. 2014 Energy-based analysis of biochemical cycles using bond graphs. Proc. R. Soc. A. 470, 20140459. (doi:10.1098/rspa.2014.0459)
    • (2014) Proc. R. Soc. A , vol.470
    • Gawthrop, P.J.1    Crampin, E.J.2
  • 35
    • 84959528456 scopus 로고    scopus 로고
    • Rigor in electronic health record knowledge representation: Lessons learned from a SNOMED CT clinical content encoding exercise
    • Monsen KA, Finn RS, Fleming TE, Garner EJ, LaValla AJ, Riemer JG. 2015 Rigor in electronic health record knowledge representation: lessons learned from a SNOMED CT clinical content encoding exercise. Inform. Health Soc. Care 21, 1–15. (doi:10.3109/17538157.2014.965302)
    • (2015) Inform. Health Soc. Care , vol.21 , pp. 1-15
    • Monsen, K.A.1    Finn, R.S.2    Fleming, T.E.3    Garner, E.J.4    Lavalla, A.J.5    Riemer, J.G.6
  • 36
    • 84906789039 scopus 로고    scopus 로고
    • Content analysis of physical examination templates in electronic health records using SNOMED CT
    • Gøeg KR, Chen R, Højen AR, Elberg P. 2014 Content analysis of physical examination templates in electronic health records using SNOMED CT. Int. J. Med. Inf. 83, 736–749. (doi:10.1016/j.ijmedinf.2014.06.006)
    • (2014) Int. J. Med. Inf , vol.83 , pp. 736-749
    • Gøeg, K.R.1    Chen, R.2    Højen, A.R.3    Elberg, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.