-
1
-
-
21944445759
-
An ontology for cell types
-
Bard, J., Rhee, S. Y., and Ashburner, M. (2005). An ontology for cell types. Genome Biol. 6:R21. doi: 10.1186/gb-2005-6-2-r21
-
(2005)
Genome Biol
, vol.6
-
-
Bard, J.1
Rhee, S.Y.2
Ashburner, M.3
-
2
-
-
80053164085
-
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project
-
Bradley, C., Bowery, A., Britten, R., Budelmann, V., Camara, O., Christie, R., et al. (2011). OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project. Prog. Biophys. Mol. Biol. 107, 32-47. doi: 10.1016/j.pbiomolbio.2011.06.015
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.107
, pp. 32-47
-
-
Bradley, C.1
Bowery, A.2
Britten, R.3
Budelmann, V.4
Camara, O.5
Christie, R.6
-
3
-
-
84862556352
-
TrakEM2 software for neural circuit reconstruction
-
Cardona, A., Saalfeld, S., Schindelin, J., Arganda-Carreras, I., Preibisch, S., Longair, M., et al. (2012). TrakEM2 software for neural circuit reconstruction. PLoS ONE. 7:e38011. doi: 10.1371/journal.pone.0038011
-
(2012)
PLoS ONE
, vol.7
-
-
Cardona, A.1
Saalfeld, S.2
Schindelin, J.3
Arganda-Carreras, I.4
Preibisch, S.5
Longair, M.6
-
4
-
-
84883221825
-
BioModels Database: a repository of mathematical models of biological processes
-
Chelliah, V., Laibe, C., and Le Novère, N. (2013). BioModels Database: a repository of mathematical models of biological processes. Methods Mol. Biol. 1021, 189-199. doi: 10.1007/978-1-62703-450-0_10
-
(2013)
Methods Mol. Biol.
, vol.1021
, pp. 189-199
-
-
Chelliah, V.1
Laibe, C.2
Le Novère, N.3
-
5
-
-
46149103610
-
Modelling biological modularity with CellML
-
Cooling, M. T., Hunter, P., and Crampin, E. J. (2008). Modelling biological modularity with CellML. IET Syst. Biol. 2, 73-79. doi: 10.1049/iet-syb:20070020
-
(2008)
IET Syst. Biol.
, vol.2
, pp. 73-79
-
-
Cooling, M.T.1
Hunter, P.2
Crampin, E.J.3
-
6
-
-
84901479094
-
Functional tissue units and their primary tissue motifs in multi-scale physiology
-
de Bono, B., Grenon, P., Baldock, R., and Hunter, P. (2013). Functional tissue units and their primary tissue motifs in multi-scale physiology. J. Biomed. Semant. 4:22. doi: 10.1186/2041-1480-4-22
-
(2013)
J. Biomed. Semant
, vol.4
, pp. 22
-
-
de Bono, B.1
Grenon, P.2
Baldock, R.3
Hunter, P.4
-
7
-
-
84864349239
-
ApiNATOMY: a novel toolkit for visualizing multiscale anatomy schematics with phenotype-related information
-
de Bono, B., Grenon, P., Sammut, S. J. (2012). ApiNATOMY: a novel toolkit for visualizing multiscale anatomy schematics with phenotype-related information. Hum. Mutat. 33, 837-848. doi: 10.1002/humu.22065
-
(2012)
Hum. Mutat.
, vol.33
, pp. 837-848
-
-
de Bono, B.1
Grenon, P.2
Sammut, S.J.3
-
8
-
-
80054074775
-
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.
-
de Bono, B., Hoehndorf, R., Wimalaratne, S., Gkoutos, G., and Grenon, P. (2011). The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions. BMC Res. Notes 4:313. doi: 10.1186/1756-0500-4-313
-
(2011)
BMC Res. Notes
, vol.4
, pp. 313
-
-
de Bono, B.1
Hoehndorf, R.2
Wimalaratne, S.3
Gkoutos, G.4
Grenon, P.5
-
9
-
-
84874253819
-
Gene ontology annotations and resources
-
Gene Ontology Consortium
-
Gene Ontology Consortium, Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Li. N., et al. (2013). Gene ontology annotations and resources. Nucleic Acids Res. 41, D530-D535. doi: 10.1093/nar/gks1050
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D530-D535
-
-
Blake, J.A.1
Dolan, M.2
Drabkin, H.3
Hill, D.P.4
Li, N.5
-
10
-
-
84911920948
-
Resistance exercise and testosterone treatment alters the proportion of numerical density of capillaries of the left ventricle of aging Wistar rats
-
Gonçalves, L., de Souza, R. R., Maifrino, L. B. M., Caperuto, E. C., Carbone, P. O., Rodrigues, B., et al. (2014). Resistance exercise and testosterone treatment alters the proportion of numerical density of capillaries of the left ventricle of aging Wistar rats. Aging Male 5, 1-5. doi: 10.3109/13685538.2014.919252
-
(2014)
Aging Male
, vol.5
, pp. 1-5
-
-
Gonçalves, L.1
de Souza, R.R.2
Maifrino, L.B.M.3
Caperuto, E.C.4
Carbone, P.O.5
Rodrigues, B.6
-
11
-
-
84881185232
-
Drug and disease model resources: a consortium to create standards and tools to enhance model-based drug development
-
Harnisch, L., Matthews, I., Chard, J., and Karlsson, M. O. (2013). Drug and disease model resources: a consortium to create standards and tools to enhance model-based drug development. CPT Pharmacomet. Syst. Pharmacol. 2, e34. doi: 10.1038/psp.2013.10
-
(2013)
CPT Pharmacomet. Syst. Pharmacol.
, vol.2
, pp. e34
-
-
Harnisch, L.1
Matthews, I.2
Chard, J.3
Karlsson, M.O.4
-
12
-
-
84876560358
-
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
-
Hastings, J., de Matos P, Dekker, A., Ennis, M., Harsha, B., Kale, N., et al. (2013). The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res. 41, D456-D463. doi: 10.1093/nar/gks1146
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D456-D463
-
-
Hastings, J.1
de Matos, P.2
Dekker, A.3
Ennis, M.4
Harsha, B.5
Kale, N.6
-
13
-
-
84875479797
-
A vision and strategy for the virtual physiological human: 2012 update
-
Hunter, P., Chapman, T., Coveney, P. V., de Bono, B., Diaz, V., Fenner, J., et al. (2013). A vision and strategy for the virtual physiological human: 2012 update. Interface Focus. 3, 20130004. doi: 10.1098/rsfs.2013.0004
-
(2013)
Interface Focus.
, vol.3
-
-
Hunter, P.1
Chapman, T.2
Coveney, P.V.3
de Bono, B.4
Diaz, V.5
Fenner, J.6
-
14
-
-
84901499060
-
Biophysical constraints on the evolution of tissue structure and function.
-
Hunter, P. J., and de Bono, B. (2014). Biophysical constraints on the evolution of tissue structure and function. J. Physiol. 592(Pt 11), 2389-2401. doi: 10.1113/jphysiol.2014.273235
-
(2014)
J. Physiol
, vol.592 PART 11
, pp. 2389-2401
-
-
Hunter, P.J.1
de Bono, B.2
-
15
-
-
84861889162
-
Web tools for large-scale 3D biological images and atlases.
-
Husz, Z. L., Burton, N., Hill, B., Milyaev, N., and Baldock, R. A. (2012). Web tools for large-scale 3D biological images and atlases. BMC Bioinformatics 13:122. doi: 10.1186/1471-2105-13-122
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 122
-
-
Husz, Z.L.1
Burton, N.2
Hill, B.3
Milyaev, N.4
Baldock, R.A.5
-
16
-
-
72449177973
-
A tiled on-the-fly sectioning server for 3D volumetric atlases
-
eds G. Bebis, R. Boyle, B. Parvin, D. Koracin, Y. Kuno, J. Wang, et al. (Berlin; Heidelberg Springer)
-
Husz, Z. L., Perry, T. P., Hill, B., Baldock, R. A., and Woolz, I. I. P. (2009). "A tiled on-the-fly sectioning server for 3D volumetric atlases," in Advances in Visual Computing [Internet], eds G. Bebis, R. Boyle, B. Parvin, D. Koracin, Y. Kuno, J. Wang, et al. (Berlin; Heidelberg Springer), 924-933.
-
(2009)
Advances in Visual Computing [Internet]
, pp. 924-933
-
-
Husz, Z.L.1
Perry, T.P.2
Hill, B.3
Baldock, R.A.4
Woolz, I.I.P.5
-
17
-
-
58149177166
-
Reactome knowledgebase of human biological pathways and processes
-
Matthews, L., Gopinath, G., Gillespie, M., Caudy, M., Croft, D., de Bono, B., et al. (2009). Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 37, D619-D622. doi: 10.1093/nar/gkn863
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D619-D622
-
-
Matthews, L.1
Gopinath, G.2
Gillespie, M.3
Caudy, M.4
Croft, D.5
de Bono, B.6
-
18
-
-
84891799734
-
The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases
-
Orchard, S., Ammari, M., Aranda, B., Breuza, L., Briganti, L., Broackes-Carter, F., et al. (2014). The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res. 42, D358-D363. doi: 10.1093/nar/gkt1115
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D358-D363
-
-
Orchard, S.1
Ammari, M.2
Aranda, B.3
Breuza, L.4
Briganti, L.5
Broackes-Carter, F.6
-
19
-
-
84906835835
-
Toward modular biological models: defining analog modules based on referent physiological mechanisms
-
Petersen, B. K., Ropella, G. E. P., and Hunt, C. A. (2014). Toward modular biological models: defining analog modules based on referent physiological mechanisms. BMC Syst. Biol. 8:95. doi: 10.1186/s12918-014-0095-1
-
(2014)
BMC Syst. Biol
, vol.8
, pp. 95
-
-
Petersen, B.K.1
Ropella, G.E.P.2
Hunt, C.A.3
-
20
-
-
84874425613
-
Influence of thyroid state on cardiac and renal capillary density and glomerular morphology in rats
-
Rodríguez-Gómez, I., Banegas, I., Wangensteen, R., Quesada, A., Jiménez, R., Gómez-Morales, M., et al. (2013). Influence of thyroid state on cardiac and renal capillary density and glomerular morphology in rats. J. Endocrinol. 216, 43-51. doi: 10.1530/JOE-12-0208
-
(2013)
J. Endocrinol.
, vol.216
, pp. 43-51
-
-
Rodríguez-Gómez, I.1
Banegas, I.2
Wangensteen, R.3
Quesada, A.4
Jiménez, R.5
Gómez-Morales, M.6
-
21
-
-
0842283371
-
A reference ontology for biomedical informatics: the foundational model of anatomy
-
Rosse, C., and Mejino, J. L. V. Jr. (2003). A reference ontology for biomedical informatics: the foundational model of anatomy. J. Biomed. Inform. 36, 478-500. doi: 10.1016/j.jbi.2003.11.007
-
(2003)
J. Biomed. Inform.
, vol.36
, pp. 478-500
-
-
Rosse, C.1
Mejino Jr, J.L.V.2
-
22
-
-
84958756567
-
Simulating Blood Flow in an Anatomical Arterial Network.
-
Auckland: University of Auckland.
-
Safaei, S. (2014). Simulating Blood Flow in an Anatomical Arterial Network. Auckland: University of Auckland.
-
(2014)
-
-
Safaei, S.1
-
23
-
-
35948989284
-
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
-
Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., et al. (2007). The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255. doi: 10.1038/nbt1346
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
-
24
-
-
84856569589
-
An infrastructure for ontology-based information systems in biomedicine: RICORDO case study
-
Wimalaratne, S. M., Grenon, P., Hoehndorf, R., Gkoutos, G. V., and de Bono, B. (2012). An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinforma. Oxf. Engl. 28, 448-450. doi: 10.1093/bioinformatics/btr662
-
(2012)
Bioinforma. Oxf. Engl.
, vol.28
, pp. 448-450
-
-
Wimalaratne, S.M.1
Grenon, P.2
Hoehndorf, R.3
Gkoutos, G.V.4
de Bono, B.5
-
25
-
-
79951986255
-
The physiome model repository 2
-
Yu, T., Lloyd, C. M., Nickerson, D. P., Cooling, M. T., Miller, A. K., Garny, A., et al. (2011). The physiome model repository 2. Bioinformatics 27, 743-744. doi: 10.1093/bioinformatics/btq723
-
(2011)
Bioinformatics
, vol.27
, pp. 743-744
-
-
Yu, T.1
Lloyd, C.M.2
Nickerson, D.P.3
Cooling, M.T.4
Miller, A.K.5
Garny, A.6
|