-
1
-
-
84949679996
-
Principles of assembly reveal a periodic table of protein complexes
-
Ahnert S.E., Marsh J.A., Hernández H., Robinson C.V., Teichmann S.A. Principles of assembly reveal a periodic table of protein complexes. Science 2015, 350:aaa2245.
-
(2015)
Science
, vol.350
-
-
Ahnert, S.E.1
Marsh, J.A.2
Hernández, H.3
Robinson, C.V.4
Teichmann, S.A.5
-
2
-
-
0032169271
-
Conservation of gene order: a fingerprint of proteins that physically interact
-
Dandekar T., Snel B., Huynen M., Bork P. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci. 1998, 23:324-328.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
3
-
-
84855261941
-
Widespread cotranslational formation of protein complexes
-
Duncan C.D.S., Mata J. Widespread cotranslational formation of protein complexes. PLoS Genet. 2011, 7:e1002398.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002398
-
-
Duncan, C.D.S.1
Mata, J.2
-
4
-
-
84876515907
-
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
-
Franceschini A., Szklarczyk D., Frankild S., Kuhn M., Simonovic M., Roth A., Lin J., Minguez P., Bork P., von Mering C., Jensen L.J. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013, 41:D808-D815.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
Minguez, P.8
Bork, P.9
von Mering, C.10
Jensen, L.J.11
-
6
-
-
7644223774
-
Why is transcription coupled to translation in bacteria?
-
Gowrishankar J., Harinarayanan R. Why is transcription coupled to translation in bacteria?. Mol. Microbiol. 2004, 54:598-603.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 598-603
-
-
Gowrishankar, J.1
Harinarayanan, R.2
-
7
-
-
34347228701
-
Determining the stoichiometry and interactions of macromolecular assemblies from mass spectrometry
-
Hernández H., Robinson C.V. Determining the stoichiometry and interactions of macromolecular assemblies from mass spectrometry. Nat. Protoc. 2007, 2:715-726.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 715-726
-
-
Hernández, H.1
Robinson, C.V.2
-
8
-
-
84946023145
-
The GOA database: gene Ontology annotation updates for 2015
-
Huntley R.P., Sawford T., Mutowo-Meullenet P., Shypitsyna A., Bonilla C., Martin M.J., O'Donovan C. The GOA database: gene Ontology annotation updates for 2015. Nucleic Acids Res. 2015, 43:D1057-D1063.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1057-D1063
-
-
Huntley, R.P.1
Sawford, T.2
Mutowo-Meullenet, P.3
Shypitsyna, A.4
Bonilla, C.5
Martin, M.J.6
O'Donovan, C.7
-
9
-
-
52649130704
-
Protein-protein interaction and quaternary structure
-
Janin J., Bahadur R.P., Chakrabarti P. Protein-protein interaction and quaternary structure. Q. Rev. Biophys. 2008, 41:133-180.
-
(2008)
Q. Rev. Biophys.
, vol.41
, pp. 133-180
-
-
Janin, J.1
Bahadur, R.P.2
Chakrabarti, P.3
-
10
-
-
0035875010
-
Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria
-
Kalir S., McClure J., Pabbaraju K., Southward C., Ronen M., Leibler S., Surette M.G., Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science 2001, 292:2080-2083.
-
(2001)
Science
, vol.292
, pp. 2080-2083
-
-
Kalir, S.1
McClure, J.2
Pabbaraju, K.3
Southward, C.4
Ronen, M.5
Leibler, S.6
Surette, M.G.7
Alon, U.8
-
11
-
-
66249146869
-
Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli
-
Kovács K., Hurst L.D., Papp B. Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli. PLoS Biol. 2009, 7:e1000115.
-
(2009)
PLoS Biol.
, vol.7
, pp. e1000115
-
-
Kovács, K.1
Hurst, L.D.2
Papp, B.3
-
12
-
-
35748959334
-
PiQSi: protein quaternary structure investigation
-
Levy E.D. PiQSi: protein quaternary structure investigation. Structure 2007, 15:1364-1367.
-
(2007)
Structure
, vol.15
, pp. 1364-1367
-
-
Levy, E.D.1
-
13
-
-
46249083761
-
Assembly reflects evolution of protein complexes
-
Levy E.D., Boeri Erba E., Robinson C.V., Teichmann S.A. Assembly reflects evolution of protein complexes. Nature 2008, 453:1262-1265.
-
(2008)
Nature
, vol.453
, pp. 1262-1265
-
-
Levy, E.D.1
Boeri Erba, E.2
Robinson, C.V.3
Teichmann, S.A.4
-
14
-
-
84899550455
-
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
-
Li G.-W., Burkhardt D., Gross C., Weissman J.S. Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 2014, 157:624-635.
-
(2014)
Cell
, vol.157
, pp. 624-635
-
-
Li, G.-W.1
Burkhardt, D.2
Gross, C.3
Weissman, J.S.4
-
15
-
-
79960614137
-
Fundamental relationship between operon organization and gene expression
-
Lim H.N., Lee Y., Hussein R. Fundamental relationship between operon organization and gene expression. Proc. Natl. Acad. Sci. USA 2011, 108:10626-10631.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 10626-10631
-
-
Lim, H.N.1
Lee, Y.2
Hussein, R.3
-
16
-
-
84891765377
-
DOOR 2.0: presenting operons and their functions through dynamic and integrated views
-
Mao X., Ma Q., Zhou C., Chen X., Zhang H., Yang J., Mao F., Lai W., Xu Y. DOOR 2.0: presenting operons and their functions through dynamic and integrated views. Nucleic Acids Res. 2014, 42:D654-D659.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D654-D659
-
-
Mao, X.1
Ma, Q.2
Zhou, C.3
Chen, X.4
Zhang, H.5
Yang, J.6
Mao, F.7
Lai, W.8
Xu, Y.9
-
17
-
-
84930715900
-
Structure, dynamics, assembly, and evolution of protein complexes
-
Marsh J.A., Teichmann S.A. Structure, dynamics, assembly, and evolution of protein complexes. Annu. Rev. Biochem. 2015, 84:551-575.
-
(2015)
Annu. Rev. Biochem.
, vol.84
, pp. 551-575
-
-
Marsh, J.A.1
Teichmann, S.A.2
-
18
-
-
84876272531
-
Protein complexes are under evolutionary selection to assemble via ordered pathways
-
Marsh J.A., Hernández H., Hall Z., Ahnert S.E., Perica T., Robinson C.V., Teichmann S.A. Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell 2013, 153:461-470.
-
(2013)
Cell
, vol.153
, pp. 461-470
-
-
Marsh, J.A.1
Hernández, H.2
Hall, Z.3
Ahnert, S.E.4
Perica, T.5
Robinson, C.V.6
Teichmann, S.A.7
-
19
-
-
84938932863
-
Structural and evolutionary versatility in protein complexes with uneven stoichiometry
-
Marsh J.A., Rees H.A., Ahnert S.E., Teichmann S.A. Structural and evolutionary versatility in protein complexes with uneven stoichiometry. Nat. Commun. 2015, 6:6394.
-
(2015)
Nat. Commun.
, vol.6
, pp. 6394
-
-
Marsh, J.A.1
Rees, H.A.2
Ahnert, S.E.3
Teichmann, S.A.4
-
20
-
-
0030210340
-
Gene order is not conserved in bacterial evolution
-
Mushegian A.R., Koonin E.V. Gene order is not conserved in bacterial evolution. Trends Genet. 1996, 12:289-290.
-
(1996)
Trends Genet.
, vol.12
, pp. 289-290
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
21
-
-
33847198656
-
Metabolic engineering of carotenoid biosynthesis in Escherichia coli by ordered gene assembly in Bacillus subtilis
-
Nishizaki T., Tsuge K., Itaya M., Doi N., Yanagawa H. Metabolic engineering of carotenoid biosynthesis in Escherichia coli by ordered gene assembly in Bacillus subtilis. Appl. Environ. Microbiol. 2007, 73:1355-1361.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1355-1361
-
-
Nishizaki, T.1
Tsuge, K.2
Itaya, M.3
Doi, N.4
Yanagawa, H.5
-
22
-
-
0019253694
-
Translational coupling during expression of the tryptophan operon of Escherichia coli
-
Oppenheim D.S., Yanofsky C. Translational coupling during expression of the tryptophan operon of Escherichia coli. Genetics 1980, 95:785-795.
-
(1980)
Genetics
, vol.95
, pp. 785-795
-
-
Oppenheim, D.S.1
Yanofsky, C.2
-
23
-
-
84898648935
-
The binary protein-protein interaction landscape of Escherichia coli
-
Rajagopala S.V., Sikorski P., Kumar A., Mosca R., Vlasblom J., Arnold R., Franca-Koh J., Pakala S.B., Phanse S., Ceol A., et al. The binary protein-protein interaction landscape of Escherichia coli. Nat. Biotechnol. 2014, 32:285-290.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 285-290
-
-
Rajagopala, S.V.1
Sikorski, P.2
Kumar, A.3
Mosca, R.4
Vlasblom, J.5
Arnold, R.6
Franca-Koh, J.7
Pakala, S.B.8
Phanse, S.9
Ceol, A.10
-
24
-
-
84947221434
-
Operon structure and cotranslational subunit association direct protein assembly in bacteria
-
Shieh Y.-W., Minguez P., Bork P., Auburger J.J., Guilbride D.L., Kramer G., Bukau B. Operon structure and cotranslational subunit association direct protein assembly in bacteria. Science 2015, 350:678-680.
-
(2015)
Science
, vol.350
, pp. 678-680
-
-
Shieh, Y.-W.1
Minguez, P.2
Bork, P.3
Auburger, J.J.4
Guilbride, D.L.5
Kramer, G.6
Bukau, B.7
-
25
-
-
79952125361
-
Economy of operon formation: cotranscription minimizes shortfall in protein complexes
-
e00177-e10
-
Sneppen K., Pedersen S., Krishna S., Dodd I., Semsey S. Economy of operon formation: cotranscription minimizes shortfall in protein complexes. MBio 2010, 1. e00177-e10.
-
(2010)
MBio
, vol.1
-
-
Sneppen, K.1
Pedersen, S.2
Krishna, S.3
Dodd, I.4
Semsey, S.5
-
26
-
-
8544264562
-
Efficient attenuation of stochasticity in gene expression through post-transcriptional control
-
Swain P.S. Efficient attenuation of stochasticity in gene expression through post-transcriptional control. J. Mol. Biol. 2004, 344:965-976.
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 965-976
-
-
Swain, P.S.1
-
27
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain P.S., Elowitz M.B., Siggia E.D. Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc. Natl. Acad. Sci. USA 2002, 99:12795-12800.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
28
-
-
23744515352
-
Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias
-
Wang R., Prince J.T., Marcotte E.M. Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias. Genome Res. 2005, 15:1118-1126.
-
(2005)
Genome Res.
, vol.15
, pp. 1118-1126
-
-
Wang, R.1
Prince, J.T.2
Marcotte, E.M.3
-
29
-
-
84941749221
-
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines
-
Wang M., Herrmann C.J., Simonovic M., Szklarczyk D., von Mering C. Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. Proteomics 2015, 15:3163-3168.
-
(2015)
Proteomics
, vol.15
, pp. 3163-3168
-
-
Wang, M.1
Herrmann, C.J.2
Simonovic, M.3
Szklarczyk, D.4
von Mering, C.5
-
31
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn M.D., Ballard C.C., Cowtan K.D., Dodson E.J., Emsley P., Evans P.R., Keegan R.M., Krissinel E.B., Leslie A.G.W., McCoy A., et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D Biol. Crystallogr. 2011, 67:235-242.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.W.9
McCoy, A.10
-
32
-
-
33751190519
-
Optimal gene partition into operons correlates with gene functional order
-
Zaslaver A., Mayo A., Ronen M., Alon U. Optimal gene partition into operons correlates with gene functional order. Phys. Biol. 2006, 3:183-189.
-
(2006)
Phys. Biol.
, vol.3
, pp. 183-189
-
-
Zaslaver, A.1
Mayo, A.2
Ronen, M.3
Alon, U.4
|