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Volumn 15, Issue 1, 2016, Pages 47-54

The past, present and future of mitochondrial genomics: Have we sequenced enough mtDNAs?

Author keywords

Genome sequencing; Marine Microbial Eukaryotic Transcriptome Sequencing Project; Microbial diversity; Mitochondrial genome; Mitochondrial transcriptome

Indexed keywords

CELL NUCLEUS DNA; MITOCHONDRIAL DNA;

EID: 84957888058     PISSN: 20412649     EISSN: 20412657     Source Type: Journal    
DOI: 10.1093/bfgp/elv027     Document Type: Review
Times cited : (107)

References (93)
  • 2
    • 84865131209 scopus 로고    scopus 로고
    • Not seeing the genomes for the DNA
    • Smith DR. Not seeing the genomes for the DNA. Brief Funct Genomics 2012;11:289-90.
    • (2012) Brief Funct Genomics , vol.11 , pp. 289-290
    • Smith, D.R.1
  • 3
    • 84876503528 scopus 로고    scopus 로고
    • RNA-Seq data: a goldmine for organelle research
    • Smith DR. RNA-Seq data: a goldmine for organelle research. Brief Funct Genomics 2013;12:454-6.
    • (2013) Brief Funct Genomics , vol.12 , pp. 454-456
    • Smith, D.R.1
  • 4
    • 79955858869 scopus 로고    scopus 로고
    • Protocol dependence of sequencing-based gene expression measurements
    • Raz T, Kapranov P, Lipson D, et al. Protocol dependence of sequencing-based gene expression measurements. PLoS One 2011;6:e19287.
    • (2011) PLoS One , vol.6
    • Raz, T.1    Kapranov, P.2    Lipson, D.3
  • 6
    • 35348944471 scopus 로고    scopus 로고
    • Mitochondrial DNA as a genomic jigsaw puzzle
    • Marande W, Burger G. Mitochondrial DNA as a genomic jigsaw puzzle. Science 2007;318:415.
    • (2007) Science , vol.318 , pp. 415
    • Marande, W.1    Burger, G.2
  • 7
    • 34547938897 scopus 로고    scopus 로고
    • The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes
    • Slamovits CH, Saldarriaga JF, Larocque A, et al. The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J Mol Biol 2007;372:356-68.
    • (2007) J Mol Biol , vol.372 , pp. 356-368
    • Slamovits, C.H.1    Saldarriaga, J.F.2    Larocque, A.3
  • 8
    • 84876062140 scopus 로고    scopus 로고
    • Evolution of extensively fragmented mitochondrial genomes in the lice of humans
    • Shao R, Zhu XQ, Barker SC, et al. 2012. Evolution of extensively fragmented mitochondrial genomes in the lice of humans. Genome Biol Evol 2012;4:1088-101.
    • (2012) Genome Biol Evol , vol.4 , pp. 1088-1101
    • Shao, R.1    Zhu, X.Q.2    Barker, S.C.20123
  • 9
    • 84959536676 scopus 로고    scopus 로고
    • MFannot Tool, Centre Robert-Cedergren Bio-informatique et Génomique, Université de Montré al, (16 April 2015, date last accessed)
    • MFannot Tool, Centre Robert-Cedergren Bio-informatique et Génomique, Université de Montré al. http://megasun.bch. umontreal.ca/cgi-bin/mfannot/mfannotInterface.pl (16 April 2015, date last accessed).
  • 10
    • 84939650665 scopus 로고    scopus 로고
    • Mitochondrial and plastid genome architecture: reoccurring themes but significant differences at the extremes
    • Smith DR, Keeling PJ. Mitochondrial and plastid genome architecture: reoccurring themes but significant differences at the extremes. Proc Natl Acad Sci USA 2015;112:10177-84.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 10177-10184
    • Smith, D.R.1    Keeling, P.J.2
  • 11
    • 84921781071 scopus 로고    scopus 로고
    • DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories
    • Witt KE, Judd K, Kitchen A, et al. DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories. J Hum Evol 2015;79:105-18.
    • (2015) J Hum Evol , vol.79 , pp. 105-118
    • Witt, K.E.1    Judd, K.2    Kitchen, A.3
  • 12
    • 20344366079 scopus 로고    scopus 로고
    • Mitochondrial DNA and disease
    • DiMauro S, Davidzon G. Mitochondrial DNA and disease. Ann Med 2005;37:222-32.
    • (2005) Ann Med , vol.37 , pp. 222-232
    • DiMauro, S.1    Davidzon, G.2
  • 14
    • 84883508065 scopus 로고    scopus 로고
    • Death of the genome paper
    • Smith DR. Death of the genome paper. Front Genet 2013;4:72.
    • (2013) Front Genet , vol.4 , pp. 72
    • Smith, D.R.1
  • 16
    • 84909634592 scopus 로고    scopus 로고
    • Microbiology. Modern symbionts inside cells mimic organelle evolution
    • Pennisi E. Microbiology. Modern symbionts inside cells mimic organelle evolution. Science 2014;346:532-3.
    • (2014) Science , vol.346 , pp. 532-533
    • Pennisi, E.1
  • 17
    • 0018757602 scopus 로고
    • Crossing the procaryote-eucaryote border: endosymbiosis or continuous development
    • Dodson EO. Crossing the procaryote-eucaryote border: endosymbiosis or continuous development. Can J Microbiol 1979;25:651-74.
    • (1979) Can J Microbiol , vol.25 , pp. 651-674
    • Dodson, E.O.1
  • 18
    • 84918313903 scopus 로고
    • On the nature of mitochondria. III. The demonstration of mitochondria by bacteriological methods. IV. A comparative study of the morphogenesis of root-nodule bacteria and chloroplasts
    • Wallin IE. On the nature of mitochondria. III. The demonstration of mitochondria by bacteriological methods. IV. A comparative study of the morphogenesis of root-nodule bacteria and chloroplasts. Am J Anat 1922;30:451-71.
    • (1922) Am J Anat , vol.30 , pp. 451-471
    • Wallin, I.E.1
  • 20
    • 0020047207 scopus 로고
    • Has the endosymbiont hypothesis been proven?
    • Gray MW, Doolittle WF. Has the endosymbiont hypothesis been proven? Microbiol Rev 1982;46:1-42.
    • (1982) Microbiol Rev , vol.46 , pp. 1-42
    • Gray, M.W.1    Doolittle, W.F.2
  • 21
    • 0020472754 scopus 로고
    • Mitochondrial genome diversity and the evolution of mitochondrial DNA
    • Gray MW. Mitochondrial genome diversity and the evolution of mitochondrial DNA. Can J Biochem 1982;60:157-71.
    • (1982) Can J Biochem , vol.60 , pp. 157-171
    • Gray, M.W.1
  • 22
    • 0021348845 scopus 로고
    • Pronounced structural similarities between the small subunit ribosomal RNA genes of wheat mitochondria and Escherichia coli
    • Spencer DF, Schnare MN, Gray MW. Pronounced structural similarities between the small subunit ribosomal RNA genes of wheat mitochondria and Escherichia coli. Proc Natl Acad Sci USA 1984;81:493-7.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 493-497
    • Spencer, D.F.1    Schnare, M.N.2    Gray, M.W.3
  • 23
    • 0032512051 scopus 로고    scopus 로고
    • The genome sequence of Rickettsia prowazekii and the origin of mitochondria
    • Andersson SGE, Zomorodipour A, Andersson JO, et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 1998;396:133-40.
    • (1998) Nature , vol.396 , pp. 133-140
    • Andersson, S.G.E.1    Zomorodipour, A.2    Andersson, J.O.3
  • 25
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • Anderson S, Bankier AT, Barrell BG, et al. Sequence and organization of the human mitochondrial genome. Nature 1981;290:457-65.
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.1    Bankier, A.T.2    Barrell, B.G.3
  • 26
    • 0019837699 scopus 로고
    • Sequence and gene organization of mouse mitochondrial DNA
    • Bibb MJ, Van Etten RA, Wright CT, et al. Sequence and gene organization of mouse mitochondrial DNA. Cell 1981;26:167-180.
    • (1981) Cell , vol.26 , pp. 167-180
    • Bibb, M.J.1    Van Etten, R.A.2    Wright, C.T.3
  • 27
    • 0019983804 scopus 로고
    • Complete sequence of bovine mitochondrial DNA conserved features of the mammalian mitochondrial genome
    • Anderson S, De Bruijn MHL, Coulson AR, et al. Complete sequence of bovine mitochondrial DNA conserved features of the mammalian mitochondrial genome. J Mol Biol 1982;156:683-717.
    • (1982) J Mol Biol , vol.156 , pp. 683-717
    • Anderson, S.1    De Bruijn, M.H.L.2    Coulson, A.R.3
  • 28
    • 0022271984 scopus 로고
    • The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code
    • Clary DO, Wolstenholme DR. The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code. J Mol Evol 1985;22:252-71.
    • (1985) J Mol Evol , vol.22 , pp. 252-271
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 29
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore JL. Animal mitochondrial genomes. Nucleic Acids Res 1999;27:1767-80.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 30
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA: a primitive form of plant mitochondrial genome
    • Oda K, Yamato K, Ohta E, et al. Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA: a primitive form of plant mitochondrial genome. J Mol Biol 1992;223:1-7.
    • (1992) J Mol Biol , vol.223 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3
  • 31
    • 0027359351 scopus 로고
    • Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication
    • Vahrenholz C, Riemen G, Pratje E, et al. Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication. Curr Genet 1993;24:241-7.
    • (1993) Curr Genet , vol.24 , pp. 241-247
    • Vahrenholz, C.1    Riemen, G.2    Pratje, E.3
  • 32
    • 0025358097 scopus 로고
    • The complete DNA sequence of the mitochondrial genome of Podospora anserina
    • Cummings DJ, McNally KL, Domenico JM, et al. The complete DNA sequence of the mitochondrial genome of Podospora anserina. Curr Genet 1990;17:375-402.
    • (1990) Curr Genet , vol.17 , pp. 375-402
    • Cummings, D.J.1    McNally, K.L.2    Domenico, J.M.3
  • 33
    • 0028098026 scopus 로고
    • A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins
    • Kairo A, Fairlamb AH, Gobright E, et al. A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins. EMBO J 1994;13:898-905.
    • (1994) EMBO J , vol.13 , pp. 898-905
    • Kairo, A.1    Fairlamb, A.H.2    Gobright, E.3
  • 34
    • 0026640745 scopus 로고
    • Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure
    • Bridge D, Cunningham CW, Schierwater B, et al. Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure Proc Natl Acad Sci USA 1992;89:8750-3.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 8750-8753
    • Bridge, D.1    Cunningham, C.W.2    Schierwater, B.3
  • 35
    • 0344876053 scopus 로고    scopus 로고
    • Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy
    • Nosek J, Tomáska L. Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy. Curr Genet 2003;44:73-84.
    • (2003) Curr Genet , vol.44 , pp. 73-84
    • Nosek, J.1    Tomáska, L.2
  • 36
    • 0019978703 scopus 로고
    • Replication of animal mitochondrial DNA
    • Clayton DA. Replication of animal mitochondrial DNA. Cell 1982;28:693-705.
    • (1982) Cell , vol.28 , pp. 693-705
    • Clayton, D.A.1
  • 37
    • 0029610067 scopus 로고
    • Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution
    • Birky CW. Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proc Natl Acad Sci USA 1995;92:11331-8.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 11331-11338
    • Birky, C.W.1
  • 38
    • 0024300787 scopus 로고
    • Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial-DNA
    • Gray MW, Boer PH. Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial-DNA. Philos Trans R Soc Lond Ser B Biol Sci 1988;319:135-47.
    • (1988) Philos Trans R Soc Lond Ser B Biol Sci , vol.319 , pp. 135-147
    • Gray, M.W.1    Boer, P.H.2
  • 40
    • 0032227304 scopus 로고    scopus 로고
    • Mitochondrial DNA: a tool for populational genetics studies
    • Castro JA, Picornell A, Ramon M. Mitochondrial DNA: a tool for populational genetics studies. Int Microbiol 1998;1:327-32.
    • (1998) Int Microbiol , vol.1 , pp. 327-332
    • Castro, J.A.1    Picornell, A.2    Ramon, M.3
  • 41
    • 0027213389 scopus 로고
    • The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants
    • Brennicke A, Grohmann L, Hiesel R, et al. The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants. FEBS Lett 1993;325:140-5.
    • (1993) FEBS Lett , vol.325 , pp. 140-145
    • Brennicke, A.1    Grohmann, L.2    Hiesel, R.3
  • 42
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nature Rev Genet 2008;9:605-18.
    • (2008) Nature Rev Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 43
    • 28844463698 scopus 로고    scopus 로고
    • Emerging technologies in DNA sequencing
    • Metzker ML. Emerging technologies in DNA sequencing. Genome Res 2005;15:1767-76.
    • (2005) Genome Res , vol.15 , pp. 1767-1776
    • Metzker, M.L.1
  • 44
    • 0028334711 scopus 로고
    • Complete mitochondrial genome amplification
    • Cheng S, Higuchi R, Stoneking M. Complete mitochondrial genome amplification. Nat Genet 1994;7:350-1.
    • (1994) Nat Genet , vol.7 , pp. 350-351
    • Cheng, S.1    Higuchi, R.2    Stoneking, M.3
  • 45
    • 0027715265 scopus 로고
    • Isolation and characterization of animal mitochondrial DNA
    • DeSalle R, Williams AK, George M. Isolation and characterization of animal mitochondrial DNA. Meth Enzymol 1993;224:176-204.
    • (1993) Meth Enzymol , vol.224 , pp. 176-204
    • DeSalle, R.1    Williams, A.K.2    George, M.3
  • 46
    • 0033639232 scopus 로고    scopus 로고
    • A case for evolutionary genomics and the comprehensive examination of sequence biodiversity
    • Pollock DD, Eisen JA, Doggett NA, et al. A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Mol Biol Evol 2000;17:1776-88.
    • (2000) Mol Biol Evol , vol.17 , pp. 1776-1788
    • Pollock, D.D.1    Eisen, J.A.2    Doggett, N.A.3
  • 47
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 2004;20:3252-55.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 48
    • 34347222917 scopus 로고    scopus 로고
    • Sequencing complete mitochondrial and plastid genomes
    • Burger G, Lavrov DV, Forget L, et al. Sequencing complete mitochondrial and plastid genomes. Nat Protoc 2007;2:603-614.
    • (2007) Nat Protoc , vol.2 , pp. 603-614
    • Burger, G.1    Lavrov, D.V.2    Forget, L.3
  • 49
    • 3943113025 scopus 로고    scopus 로고
    • Use of a PCR-based approach for sequencing whole mitochondrial genomes of insects: two examples (cockroach and dragonfly) based on the method developed for decapod crustaceans
    • Yamauchi MM, Miya MU, Nishida M. Use of a PCR-based approach for sequencing whole mitochondrial genomes of insects: two examples (cockroach and dragonfly) based on the method developed for decapod crustaceans. Insect Mol Biol 2004;13:435-42.
    • (2004) Insect Mol Biol , vol.13 , pp. 435-442
    • Yamauchi, M.M.1    Miya, M.U.2    Nishida, M.3
  • 50
    • 48249154978 scopus 로고    scopus 로고
    • Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data
    • Sobreira TJP, Gruber A. Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data. Bioinformatics 2008;24:1676-80.
    • (2008) Bioinformatics , vol.24 , pp. 1676-1680
    • Sobreira, T.J.P.1    Gruber, A.2
  • 51
    • 0029919773 scopus 로고    scopus 로고
    • A world wide web (WWW) server database engine for an organelle database, MitoDat
    • Lemkin PF, Chipperfield M, Merril C, et al. A world wide web (WWW) server database engine for an organelle database, MitoDat. Electrophoresis 1996;17:566-72.
    • (1996) Electrophoresis , vol.17 , pp. 566-572
    • Lemkin, P.F.1    Chipperfield, M.2    Merril, C.3
  • 52
    • 58149194601 scopus 로고    scopus 로고
    • GOBASE: an organelle genome database
    • O'Brien EA, Zhang Y, Wang E, et al. GOBASE: an organelle genome database. Nucleic Acids Res 2009;37:D946-50.
    • (2009) Nucleic Acids Res , vol.37 , pp. D946-D950
    • O'Brien, E.A.1    Zhang, Y.2    Wang, E.3
  • 53
    • 84959520819 scopus 로고    scopus 로고
    • National Center for Biotechnology Information, Organelle Genome Resources, (16 April 2015, date last accessed)
    • National Center for Biotechnology Information, Organelle Genome Resources. http://www.ncbi.nlm.nih.gov/genomes/GenomesHome.cgi?taxid=2759&hopt=html (16 April 2015, date last accessed).
  • 54
    • 13444256467 scopus 로고    scopus 로고
    • MITOMAP: a human mitochondrial genome database-2004 update
    • Brandon MC, Lott MT, Nguyen KC, et al. MITOMAP: a human mitochondrial genome database-2004 update. Nucleic Acids Res 2005;33:D611-13.
    • (2005) Nucleic Acids Res , vol.33 , pp. D611-D613
    • Brandon, M.C.1    Lott, M.T.2    Nguyen, K.C.3
  • 55
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker ML. Sequencing technologies - the next generation. Nat Rev Genet 2010;11:31-46.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 56
    • 84903189897 scopus 로고    scopus 로고
    • High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq
    • King J, LaRue B, Novroski N, et al. High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq. Forensic Sci Int Genet 2014;12:128-35.
    • (2014) Forensic Sci Int Genet , vol.12 , pp. 128-135
    • King, J.1    LaRue, B.2    Novroski, N.3
  • 57
    • 84924404773 scopus 로고    scopus 로고
    • Underlying data for sequencing the mitochondrial genome with the massively parallel sequencing platform Ion TorrentTM PGMTM
    • Seo SB, Zeng X, King JL, et al. Underlying data for sequencing the mitochondrial genome with the massively parallel sequencing platform Ion TorrentTM PGMTM. BMC Genomics 2015;16:S4.
    • (2015) BMC Genomics , vol.16 , pp. S4
    • Seo, S.B.1    Zeng, X.2    King, J.L.3
  • 58
    • 59349101382 scopus 로고    scopus 로고
    • Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods
    • Hert DG, Fredlake CP, Barron AE. Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods. Electrophoresis, 2008;29:4618-26.
    • (2008) Electrophoresis , vol.29 , pp. 4618-4626
    • Hert, D.G.1    Fredlake, C.P.2    Barron, A.E.3
  • 59
    • 84959462155 scopus 로고    scopus 로고
    • National Center for Biotechnology Information, Sequence Read Archive, (16 April 2015, date last accessed)
    • National Center for Biotechnology Information, Sequence Read Archive. http://www.ncbi.nlm.nih.gov/Traces/sra/ (16 April 2015, date last accessed).
  • 60
    • 70849112619 scopus 로고    scopus 로고
    • Unparalleled GC content in the plastid DNA of Selaginella
    • Smith DR. Unparalleled GC content in the plastid DNA of Selaginella. Plant Mol Biol 2009;71:627-39.
    • (2009) Plant Mol Biol , vol.71 , pp. 627-639
    • Smith, D.R.1
  • 61
    • 84888252454 scopus 로고    scopus 로고
    • Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae
    • Smith DR, Arrigo KR, Alderkamp AC, et al. Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae. Mol Phylogenet Evol 2014;71:36-40.
    • (2014) Mol Phylogenet Evol , vol.71 , pp. 36-40
    • Smith, D.R.1    Arrigo, K.R.2    Alderkamp, A.C.3
  • 62
    • 84862993199 scopus 로고    scopus 로고
    • First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution
    • Smith DR, Kayal E, Yanagihara AA, et al. First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution. Genome Biol Evol 2012;4:52-8.
    • (2012) Genome Biol Evol , vol.4 , pp. 52-58
    • Smith, D.R.1    Kayal, E.2    Yanagihara, A.A.3
  • 63
    • 84902504071 scopus 로고    scopus 로고
    • A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains
    • Preston MD, Campino S, Assefa SA, et al. A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains. Nat Commun 2014;5:4052.
    • (2014) Nat Commun , vol.5 , pp. 4052
    • Preston, M.D.1    Campino, S.2    Assefa, S.A.3
  • 64
    • 84964312706 scopus 로고    scopus 로고
    • MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes
    • Kannan S, Rogozin IB, Koonin EV. MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes. BMC Evol Biol 2014;14:237.
    • (2014) BMC Evol Biol , vol.14 , pp. 237
    • Kannan, S.1    Rogozin, I.B.2    Koonin, E.V.3
  • 65
    • 44449171351 scopus 로고    scopus 로고
    • A universal DNA mini-barcode for biodiversity analysis
    • Meusnier I, Singer GAC, Landry JF, et al. A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 2008;9:214.
    • (2008) BMC Genomics , vol.9 , pp. 214
    • Meusnier, I.1    Singer, G.A.C.2    Landry, J.F.3
  • 66
    • 0242693327 scopus 로고    scopus 로고
    • Forensics and mitochondrial DNA: applications, debates, and foundations
    • Budowle B, Allard MW, Wilson MR, et al. Forensics and mitochondrial DNA: applications, debates, and foundations. Annu Rev Genomics Hum Genet 2003;4:119-41.
    • (2003) Annu Rev Genomics Hum Genet , vol.4 , pp. 119-141
    • Budowle, B.1    Allard, M.W.2    Wilson, M.R.3
  • 67
    • 84900009860 scopus 로고    scopus 로고
    • A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins
    • Orlando L. A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins. BioEssays 2014;36:598-605.
    • (2014) BioEssays , vol.36 , pp. 598-605
    • Orlando, L.1
  • 68
    • 84868087346 scopus 로고    scopus 로고
    • The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
    • Allentoft ME, Collins M, Harker D, et al. The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proc R Soc B 2012;279:4724-33.
    • (2012) Proc R Soc B , vol.279 , pp. 4724-4733
    • Allentoft, M.E.1    Collins, M.2    Harker, D.3
  • 69
    • 84856483430 scopus 로고    scopus 로고
    • Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
    • Sloan DB, Alverson AJ, Chuckalovcak JP, et al. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. PLoS Biol 2012;10:e1001241.
    • (2012) PLoS Biol , vol.10
    • Sloan, D.B.1    Alverson, A.J.2    Chuckalovcak, J.P.3
  • 70
    • 0036691852 scopus 로고    scopus 로고
    • Kinetoplast DNA network: evolution of an improbable structure
    • Lukes J, Guilbride DL, Votypka J, et al. Kinetoplast DNA network: evolution of an improbable structure. Eukaryot Cell 2002;4:495-502.
    • (2002) Eukaryot Cell , vol.4 , pp. 495-502
    • Lukes, J.1    Guilbride, D.L.2    Votypka, J.3
  • 71
    • 78650727966 scopus 로고    scopus 로고
    • Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion
    • Hao W, Richardson AO, Zheng Y, et al. Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion. Proc Natl Acad Sci USA 2010;107:21576-81.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 21576-21581
    • Hao, W.1    Richardson, A.O.2    Zheng, Y.3
  • 72
    • 33645214213 scopus 로고    scopus 로고
    • Mutation pressure and the evolution of organelle genomic architecture
    • Lynch M, Koskella B, Schaack S. Mutation pressure and the evolution of organelle genomic architecture. Science 2006;311:1727-1730.
    • (2006) Science , vol.311 , pp. 1727-1730
    • Lynch, M.1    Koskella, B.2    Schaack, S.3
  • 73
    • 79954582755 scopus 로고    scopus 로고
    • Does constructive neutral evolution play an important role in the origin of cellular complexity?
    • Speijer D. Does constructive neutral evolution play an important role in the origin of cellular complexity? BioEssays 2011;33:344-9.
    • (2011) BioEssays , vol.33 , pp. 344-349
    • Speijer, D.1
  • 74
    • 84876043934 scopus 로고    scopus 로고
    • Making your GenBank entry count
    • Smith DR. Making your GenBank entry count. Front Genet 2012;3:123.
    • (2012) Front Genet , vol.3 , pp. 123
    • Smith, D.R.1
  • 75
    • 84938592212 scopus 로고    scopus 로고
    • Buying in to bioinformatics: an introduction to commercial sequence analysis software
    • Smith DR. Buying in to bioinformatics: an introduction to commercial sequence analysis software. Brief Bioinform 2015;16:700-709.
    • (2015) Brief Bioinform , vol.16 , pp. 700-709
    • Smith, D.R.1
  • 76
  • 77
    • 33645574750 scopus 로고    scopus 로고
    • No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
    • Hellberg ME. No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation. BMC Evol Biol 2006;6:24.
    • (2006) BMC Evol Biol , vol.6 , pp. 24
    • Hellberg, M.E.1
  • 78
    • 34248578392 scopus 로고    scopus 로고
    • The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts
    • Bendich AJ. The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts. BioEssays 2007;29:474-83.
    • (2007) BioEssays , vol.29 , pp. 474-483
    • Bendich, A.J.1
  • 79
    • 77956908672 scopus 로고    scopus 로고
    • The end of the circle for yeast mitochondrial DNA
    • Bendich AJ. The end of the circle for yeast mitochondrial DNA. Mol Cell 2010;39:831-2.
    • (2010) Mol Cell , vol.39 , pp. 831-832
    • Bendich, A.J.1
  • 80
    • 84959528433 scopus 로고    scopus 로고
    • Canadian Institute for Advanced Research, Integrated Microbial Biodiversity, (16 April 2015, date last accessed)
    • Canadian Institute for Advanced Research, Integrated Microbial Biodiversity. http://www.cifar.ca/integrated-microbial-biodiversity (16 April 2015, date last accessed).
  • 81
    • 84903286893 scopus 로고    scopus 로고
    • The marine microbial eukaryote transcriptome sequencing project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
    • Keeling PJ, Burki F, Wilcox HM, et al. The marine microbial eukaryote transcriptome sequencing project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biol 2014;12: e1001889.
    • (2014) PLoS Biol , vol.12
    • Keeling, P.J.1    Burki, F.2    Wilcox, H.M.3
  • 82
    • 84880527958 scopus 로고    scopus 로고
    • Reconstructing mitochondrial genomes directly from a genomic next-generation sequencing reads-a baiting and iterative mapping approach
    • Hahn C, Bachmann L, Chevreux B. Reconstructing mitochondrial genomes directly from a genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucleic Acids Res 2013;41:e129.
    • (2013) Nucleic Acids Res , vol.41
    • Hahn, C.1    Bachmann, L.2    Chevreux, B.3
  • 83
    • 78649742492 scopus 로고    scopus 로고
    • Environmental barcoding reveals massive dinoflagellate diversity in marine environments
    • Stern RF, Horak A, Andrew RL, et al. Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One 2010;5:e13991.
    • (2010) PLoS One , vol.5
    • Stern, R.F.1    Horak, A.2    Andrew, R.L.3
  • 84
    • 79952167212 scopus 로고    scopus 로고
    • Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life
    • Kim E, Harrison JW, Sudek S, et al. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proc Natl Acad Sci USA 2011;108:1496-1500.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 1496-1500
    • Kim, E.1    Harrison, J.W.2    Sudek, S.3
  • 85
    • 84861386206 scopus 로고    scopus 로고
    • Collodictyon-an ancient lineage in the tree of eukaryotes
    • Zhao S, Burki F, Bra° te J, et al. Collodictyon-an ancient lineage in the tree of eukaryotes. Mol Biol Evol 2012;29:1557-68.
    • (2012) Mol Biol Evol , vol.29 , pp. 1557-1568
    • Zhao, S.1    Burki, F.2    Brate, J.3
  • 86
    • 77349122827 scopus 로고    scopus 로고
    • Diversity and reductive evolution of mitochondria among microbial eukaryotes
    • Hjort K, Goldberg AV, Tsaousis AD, et al. Diversity and reductive evolution of mitochondria among microbial eukaryotes. Philos Trans R Soc Lond B Biol Sci 2010;365:713-27.
    • (2010) Philos Trans R Soc Lond B Biol Sci , vol.365 , pp. 713-727
    • Hjort, K.1    Goldberg, A.V.2    Tsaousis, A.D.3
  • 87
    • 79951574071 scopus 로고    scopus 로고
    • Systematically fragmented genes in a multipartite mitochondrial genome
    • Vlcek C, Marande W, Teijeiro S, et al. Systematically fragmented genes in a multipartite mitochondrial genome. Nucleic Acids Res 2011;39:979-88.
    • (2011) Nucleic Acids Res , vol.39 , pp. 979-988
    • Vlcek, C.1    Marande, W.2    Teijeiro, S.3
  • 88
    • 0029870907 scopus 로고    scopus 로고
    • Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis
    • Bendich AJ. Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis. J Mol Biol 1996;255:564-88.
    • (1996) J Mol Biol , vol.255 , pp. 564-588
    • Bendich, A.J.1
  • 89
    • 79961197590 scopus 로고    scopus 로고
    • Evolution of linear chromosomes and multipartite genomes in yeast mitochondria
    • Valach M, Farkas Z, Fricova D, et al. Evolution of linear chromosomes and multipartite genomes in yeast mitochondria. Nucleic Acids Res 2011;39:4202-19.
    • (2011) Nucleic Acids Res , vol.39 , pp. 4202-4219
    • Valach, M.1    Farkas, Z.2    Fricova, D.3
  • 90
    • 84897000112 scopus 로고    scopus 로고
    • Structure of the yeast mitochondrial large ribosomal subunit
    • Amunts A, Brown A, Bai XC, et al. Structure of the yeast mitochondrial large ribosomal subunit. Science 2014;343:1485-9.
    • (2014) Science , vol.343 , pp. 1485-1489
    • Amunts, A.1    Brown, A.2    Bai, X.C.3
  • 91
    • 84927930436 scopus 로고    scopus 로고
    • The structure of the human mitochondrial ribosome
    • Amunts A, Brown A, Toots J, et al. The structure of the human mitochondrial ribosome. Science 2015;348:95-8.
    • (2015) Science , vol.348 , pp. 95-98
    • Amunts, A.1    Brown, A.2    Toots, J.3
  • 92
    • 84939832176 scopus 로고    scopus 로고
    • Maternal transmission, sex ratio distortion, and mitochondria
    • Perlman SJ, Hodson CN, Hamilton PT, et al. Maternal transmission, sex ratio distortion, and mitochondria. Proc Natl Acad Sci USA 2015;112:10162-8.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 10162-10168
    • Perlman, S.J.1    Hodson, C.N.2    Hamilton, P.T.3
  • 93
    • 84920996898 scopus 로고    scopus 로고
    • Using plants to elucidate the mechanisms of cytonuclear co-evolution
    • Sloan DB. Using plants to elucidate the mechanisms of cytonuclear co-evolution. New Phytol 2015;205:1040-6.
    • (2015) New Phytol , vol.205 , pp. 1040-1046
    • Sloan, D.B.1


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