메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

(22)  Preston, Mark D a   Campino, Susana b   Assefa, Samuel A a   Echeverry, Diego F c,d   Ocholla, Harold e,f   Amambua Ngwa, Alfred g   Stewart, Lindsay B a,g   Conway, David J h,i   Borrmann, Steffen j   Michon, Pascal k   Zongo, Issaka k   Ouédraogo, Jean Bosco b,l   Djimde, Abdoulaye A l   Doumbo, Ogobara K m,n   Nosten, Francois o   Pain, Arnab a   Bousema, Teun a   Drakeley, Chris J p   Fairhurst, Rick M a   Sutherland, Colin J a   more..


Author keywords

[No Author keywords available]

Indexed keywords

AIR TRANSPORTATION; BIOGEOGRAPHICAL REGION; DISEASE VECTOR; GENETIC MARKER; GENOME; HEALTH RISK; MALARIA; OPTICAL METHOD; PARASITE; PUBLIC HEALTH;

EID: 84902504071     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms5052     Document Type: Article
Times cited : (106)

References (51)
  • 1
    • 84874499711 scopus 로고    scopus 로고
    • WHO WHO
    • WHO. World Malaria Report 2012, WHO (available at http://www.who.int/ malaria/publications/world-malaria-report-2012/report/en/index.html) (2012).
    • (2012) World Malaria Report 2012
  • 2
    • 84861461519 scopus 로고    scopus 로고
    • Emergence of artemisinin-resistant malaria on the western border of Thailand: A longitudinal study
    • Phyo, A. P. et al. Emergence of artemisinin-resistant malaria on the western border of Thailand: a longitudinal study. Lancet 379, 1960-1966 (2012).
    • (2012) Lancet , vol.379 , pp. 1960-1966
    • Phyo, A.P.1
  • 3
    • 84892372929 scopus 로고    scopus 로고
    • A molecular marker of artemisinin-resistant Plasmodium falciparum malaria
    • Ariey, F. et al. A molecular marker of artemisinin-resistant Plasmodium falciparum malaria. Nature 505, 50-55 (2014).
    • (2014) Nature , vol.505 , pp. 50-55
    • Ariey, F.1
  • 4
    • 84889871122 scopus 로고    scopus 로고
    • Identification and control of a poliomyelitis outbreak in Xinjiang
    • Luo, H. M. et al. Identification and control of a poliomyelitis outbreak in Xinjiang, China. N. Engl. J. Med. 369, 1981-1990 (2013).
    • (2013) China. N. Engl. J. Med. , vol.369 , pp. 1981-1990
    • Luo, H.M.1
  • 5
    • 56349168406 scopus 로고    scopus 로고
    • A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking
    • Daniels, R. et al. A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking. Malar. J. 7, 223 (2008).
    • (2008) Malar. J. , vol.7 , pp. 223
    • Daniels, R.1
  • 7
    • 58149333420 scopus 로고    scopus 로고
    • Apicoplast and mitochondrion in gametocytogenesis of Plasmodium falciparum
    • Okamoto, N., Spurck, T. P., Goodman, C. D. & McFadden, G. I. Apicoplast and mitochondrion in gametocytogenesis of Plasmodium falciparum. Eukaryot. Cell 8, 128-132 (2008).
    • (2008) Eukaryot. Cell , vol.8 , pp. 128-132
    • Okamoto, N.1    Spurck, T.P.2    Goodman, C.D.3    McFadden, G.I.4
  • 8
    • 77953027026 scopus 로고    scopus 로고
    • Malaria gametocytogenesis
    • Baker D. A. Malaria gametocytogenesis. Mol. Biochem. Parasitol. 172, 57-65 (2010).
    • (2010) Mol. Biochem. Parasitol. , vol.172 , pp. 57-65
    • Baker, D.A.1
  • 9
    • 0033765026 scopus 로고    scopus 로고
    • Origin of Plasmodium falciparum malaria is traced by mitochondrial DNA
    • Conway, D. J. et al. Origin of Plasmodium falciparum malaria is traced by mitochondrial DNA. Mol. Biochem. Parasitol. 111, 163-171 (2000).
    • (2000) Mol. Biochem. Parasitol. , vol.111 , pp. 163-171
    • Conway, D.J.1
  • 10
    • 0037432740 scopus 로고    scopus 로고
    • Early origin and recent expansion of Plasmodium falciparum
    • 318-321
    • Joy, D. A. et al. Early origin and recent expansion of Plasmodium falciparum. Science 300, 318-321 (2003).
    • (2003) Science , vol.300
    • Joy, D.A.1
  • 11
    • 34547757436 scopus 로고    scopus 로고
    • Parallel evolution of adaptive mutations in Plasmodium falciparum mitochondrial DNA during atovaquone-proguanil treatment
    • DOI 10.1093/molbev/msm087
    • Musset, L., Le Bras, J. & Clain, J. Parallel evolution of adaptive mutations in Plasmodium falciparum mitochondrial DNA during atovaquone-proguanil treatment. Mol. Biol. Evol. 24, 1582-1585 (2007). (Pubitemid 47236687)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1582-1585
    • Musset, L.1    Le Bras, J.2    Clain, J.3
  • 13
  • 14
    • 0031444101 scopus 로고    scopus 로고
    • A plastid organelle as a drug target in apicomplexan parasites
    • DOI 10.1038/37132
    • Fichera, M. E. & Roos, D. S. A plastid organelle as a drug target in apicomplexan parasites. Nature 390, 407-409 (1997). (Pubitemid 28027322)
    • (1997) Nature , vol.390 , Issue.6658 , pp. 407-409
    • Fichera, M.E.1    Roos, D.S.2
  • 15
    • 0035188222 scopus 로고    scopus 로고
    • The apicoplast as an antimalarial drug target
    • DOI 10.1054/drup.2001.0205
    • Ralph, S. A., D'Ombrain, M. C. & McFadden, G. I. The apicoplast as an antimalarial drug target. Drug Resist. Updat. 4, 145-151 (2001). (Pubitemid 33089452)
    • (2001) Drug Resistance Updates , vol.4 , Issue.3 , pp. 145-151
    • Ralph, S.A.1    D'Ombrain, M.C.2    McFadden, G.I.3
  • 16
    • 84875474141 scopus 로고    scopus 로고
    • M.A systematic in silico search for target similarity identifies several approved drugs with potential activity against the plasmodium falciparum apicoplast
    • Bispo, N. A., Culleton, R., Silva, L. A., Cravo, P. & Costa, F. T. M.A systematic in silico search for target similarity identifies several approved drugs with potential activity against the plasmodium falciparum apicoplast. PLoS ONE 8, e59288 (2013).
    • (2013) PLoS ONE , vol.8
    • Bispo, N.A.1    Culleton, R.2    Silva, L.A.3    Cravo, P.4    Costa, F.T.5
  • 17
    • 77955605526 scopus 로고    scopus 로고
    • Natural immunization against malaria: Causal prophylaxis with antibiotics
    • Friesen J, J. et al. Natural immunization against malaria: causal prophylaxis with antibiotics. Sci. Transl. Med. 2, 40ra49 (2010).
    • (2010) Sci. Transl. Med. , vol.2
    • Friesen, J.J.1
  • 18
    • 0034618460 scopus 로고    scopus 로고
    • Linkage disequilibrium and phylogenetic congruence between chloroplast and mitochondrial haplotypes in Silene vulgaris
    • Olson, M. S. & McCauley, D. E. Linkage disequilibrium and phylogenetic congruence between chloroplast and mitochondrial haplotypes in Silene vulgaris. Proc. R. Soc. Lond. B Biol. Sci. 267, 1801-1808 (2000).
    • (2000) Proc. R. Soc. Lond. B Biol. Sci. , vol.267 , pp. 1801-1808
    • Olson, M.S.1    McCauley, D.E.2
  • 19
    • 84866728341 scopus 로고    scopus 로고
    • Exceptional inheritance of plastids via pollen in Nicotiana sylvestris with no detectable paternal mitochondrial DNA in the progeny
    • Thyssen, G., Svab, Z. & Maliga, P. Exceptional inheritance of plastids via pollen in Nicotiana sylvestris with no detectable paternal mitochondrial DNA in the progeny. Plant J. 72, 84-88 (2012).
    • (2012) Plant J. , vol.72 , pp. 84-88
    • Thyssen, G.1    Svab, Z.2    Maliga, P.3
  • 20
    • 9444266430 scopus 로고    scopus 로고
    • The apicoplast: A review of the derived plastid of apicomplexan parasites
    • Waller, R. F. & McFadden, G. I. The apicoplast: a review of the derived plastid of apicomplexan parasites. Curr. Issues Mol. Biol. 7, 57-80 (2005). (Pubitemid 39561791)
    • (2005) Current Issues in Molecular Biology , vol.7 , Issue.1 , pp. 57-80
    • Waller, R.F.1    McFadden, G.I.2
  • 22
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: Defining, estimating and interpreting FST
    • Holsinger, K. E. & Weir, B. S. Genetics in geographically structured populations: defining, estimating and interpreting FST. Nat. Rev. Genet. 10, 639-650 (2009).
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 639-650
    • Holsinger, K.E.1    Weir, B.S.2
  • 23
    • 84874209491 scopus 로고    scopus 로고
    • A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data
    • Sepúlveda, N. et al. A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data. BMC Genomics 14, 128 (2013).
    • (2013) BMC Genomics , vol.14 , pp. 128
    • Sepúlveda, N.1
  • 24
    • 80051660606 scopus 로고    scopus 로고
    • Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients
    • Robinson, T. et al. Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients. PLoS ONE 6, e23204 (2011).
    • (2011) PLoS ONE , vol.6
    • Robinson, T.1
  • 25
    • 84864655057 scopus 로고    scopus 로고
    • Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite
    • Park, D. J. et al. Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite. Proc. Natl Acad. Sci. USA 109, 13052-13057 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 13052-13057
    • Park, D.J.1
  • 26
    • 84901474677 scopus 로고    scopus 로고
    • Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity
    • epub ahead of print)
    • Mobegi, V. A. et al. Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity. Mol. Biol. Evol. (epub ahead of print) (2014).
    • (2014) Mol. Biol. Evol. (
    • Mobegi, V.A.1
  • 27
    • 84900791013 scopus 로고    scopus 로고
    • PlasmoView: A web-based resource to visualize global Plasmodium falciparum genomic variation
    • Preston, M. D. et al. PlasmoView: a web-based resource to visualize global Plasmodium falciparum genomic variation. J. Infect. Dis 209, 1808-1815 (2014).
    • (2014) J. Infect. Dis , vol.209 , pp. 1808-1815
    • Preston, M.D.1
  • 28
    • 84863982076 scopus 로고    scopus 로고
    • Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
    • Manske, M. et al. Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature 487, 375-379 (2012).
    • (2012) Nature , vol.487 , pp. 375-379
    • Manske, M.1
  • 29
    • 84893620324 scopus 로고    scopus 로고
    • 20 years since the introduction of DNA barcoding: From theory to application
    • Pecnikar, F Z. & Buzan, E. V. 20 years since the introduction of DNA barcoding: from theory to application. J. Appl. Genet. 55, 43-52 (2014).
    • (2014) J. Appl. Genet. , vol.55 , pp. 43-52
    • Pecnikar, F.Z.1    Buzan, E.V.2
  • 30
    • 0023163377 scopus 로고
    • Mitochondrial DNA and human evolution
    • 31-36
    • Cann, R. L. et al. Mitochondrial DNA and human evolution. Nature 325, 31-36 (1987).
    • (1987) Nature , vol.325
    • Cann, R.L.1
  • 32
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595 (1989). (Pubitemid 19274682)
    • (1989) Genetics , vol.123 , Issue.3 , pp. 585-595
    • Tajima, F.1
  • 33
    • 77949661216 scopus 로고    scopus 로고
    • Artemisinin directly targets malarial mitochondria through its specific mitochondrial activation
    • Wang, J. et al. Artemisinin directly targets malarial mitochondria through its specific mitochondrial activation. PLoS One 5, e9582 (2010).
    • (2010) PLoS One , vol.5
    • Wang, J.1
  • 34
    • 33746302565 scopus 로고    scopus 로고
    • Decreasing pfmdr1 copy number in Plasmodium falciparum malaria heightens susceptibility to mefloquine, lumefantrine, halofantrine, quinine, and artemisinin
    • DOI 10.1086/507115
    • Sidhu, A. B. et al. Decreasing pfmdr1 copy number in Plasmodium falciparum malaria heightens susceptibility to mefloquine, lumefantrine, halofantrine, quinine, and artemisinin. J. Infect. Dis. 194, 528-535 (2006). (Pubitemid 44162666)
    • (2006) Journal of Infectious Diseases , vol.194 , Issue.4 , pp. 528-535
    • Sidhu, A.B.S.1    Uhlemann, A.-C.2    Valderramos, S.G.3    Valderramos, J.-C.4    Krishna, S.5    Fidock, D.A.6
  • 36
    • 84888882898 scopus 로고    scopus 로고
    • Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya
    • Borrmann S, S. et al. Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya. Sci. Rep. 3, 3318 (2013).
    • (2013) Sci. Rep. , vol.3 , pp. 3318
    • Borrmann, S.S.1
  • 37
    • 84865479657 scopus 로고    scopus 로고
    • The Plasmodium apicoplast genome: Conserved structure and close relationship of P. Ovale to rodent malaria parasites
    • Arisue, N. et al. The Plasmodium apicoplast genome: conserved structure and close relationship of P. ovale to rodent malaria parasites. Mol. Biol. Evol. 29, 2095-2099 (2012).
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 2095-2099
    • Arisue, N.1
  • 38
    • 43949134849 scopus 로고    scopus 로고
    • Apicoplast translation, transcription and genome replication: Targets for antimalarial antibiotics
    • Dahl, E. L. & Rosenthal, P. J. Apicoplast translation, transcription and genome replication: targets for antimalarial antibiotics. Trends Parasitol. 24, 279-284 (2008).
    • (2008) Trends Parasitol. , vol.24 , pp. 279-284
    • Dahl, E.L.1    Rosenthal, P.J.2
  • 42
    • 58149174244 scopus 로고    scopus 로고
    • High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography
    • Hershberg, R. et al. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 6, e311 (2008).
    • (2008) PLoS Biol. , vol.6
    • Hershberg, R.1
  • 43
    • 84878715473 scopus 로고    scopus 로고
    • Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia
    • Miotto, O. et al. Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia. Nat. Genet. 45, 648-655 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 648-655
    • Miotto, O.1
  • 44
    • 84857678104 scopus 로고    scopus 로고
    • Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data
    • Auburn, S. et al. Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data. PLoS One 7, e32891 (2012).
    • (2012) PLoS One , vol.7
    • Auburn, S.1
  • 45
    • 84869460203 scopus 로고    scopus 로고
    • VarB: A variation browsing and analysis tool for variants derived from next-generation sequencing data
    • Preston, M. D. et al. VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data. Bioinformatics 28, 2983-2985 (2013).
    • (2013) Bioinformatics , vol.28 , pp. 2983-2985
    • Preston, M.D.1
  • 46
    • 84867761314 scopus 로고    scopus 로고
    • SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites
    • Amambua-Ngwa, A. et al. SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites. Mol. Biol. Evol. 29, 3249-3253 (2012)
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 3249-3253
    • Amambua-Ngwa, A.1
  • 48
    • 0036720020 scopus 로고    scopus 로고
    • The Ka/Ks ratio: Diagnosing the form of sequence evolution
    • Hurst., L. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet. 18, 486-489 (2002).
    • (2002) Trends Genet , vol.18 , pp. 486-489
    • Hurst, L.1
  • 49
    • 20544447886 scopus 로고    scopus 로고
    • Linkage disequilibrium for different scales and applications
    • Mueller, J. C. Linkage disequilibrium for different scales and applications. Brief Bioinform. 5, 355-364 (2004).
    • (2004) Brief Bioinform. , vol.5 , pp. 355-364
    • Mueller, J.C.1
  • 51
    • 0345040873 scopus 로고    scopus 로고
    • Classification and regression by randomforest
    • Liaw, A. & Wiener, M. Classification and regression by randomforest. R News 2, 18-22 (2002).
    • (2002) R News , vol.2 , pp. 18-22
    • Liaw, A.1    Wiener, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.