메뉴 건너뛰기




Volumn 18, Issue 2, 2016, Pages 189-198

Exome sequencing identifies rare variants in multiple genes in atrioventricular septal defect

(18)  D'Alessandro, Lisa C A a   Al Turki, Saeed b,c   Manickaraj, Ashok Kumar a   Manase, Dorin a   Mulder, Barbara J M d   Bergin, Lynn e   Rosenberg, Herschel C e   Mondal, Tapas f   Gordon, Elaine f   Lougheed, Jane g   Smythe, John h   Devriendt, Koen i   Bhattacharya, Shoumo j   Watkins, Hugh j   Bentham, Jamie k   Bowdin, Sarah a   Hurles, Matthew E b   Mital, Seema a  


Author keywords

atrioventricular septal defect; CHARGE syndrome; Cornelia de Lange syndrome; endocardial cushion defect; wholeexome sequencing

Indexed keywords

ADOLESCENT; ARTICLE; ATRIOVENTRICULAR SEPTAL DEFECT; BMPR1A GENE; CEP152 GENE; CHD7 GENE; CONFIDENCE INTERVAL; CONTROLLED STUDY; FALLOT TETRALOGY; FEMALE; GENE; GENE SEQUENCE; GENETIC ANALYZER; GENETIC ASSOCIATION; HUMAN; MAJOR CLINICAL STUDY; MALE; MDM4 GENE; NIPBL GENE; ODDS RATIO; WHOLE EXOME SEQUENCING; WHOLE EXOME SEQUENCING KIT; ZFPM2 GENE; COHORT ANALYSIS; DNA MUTATIONAL ANALYSIS; DNA SEQUENCE; EXOME; GENETIC VARIATION; GENETICS; GENOTYPE; HEART SEPTUM DEFECT; MUTATION; PHENOTYPE;

EID: 84957701686     PISSN: 10983600     EISSN: 15300366     Source Type: Journal    
DOI: 10.1038/gim.2015.60     Document Type: Article
Times cited : (33)

References (40)
  • 3
    • 0344406969 scopus 로고    scopus 로고
    • Missense mutations in CRELD1 are associated with cardiac atrioventricular septal defects
    • Robinson SW, Morris CD, Goldmuntz E., et al. Missense mutations in CRELD1 are associated with cardiac atrioventricular septal defects. Am J Hum Genet 2003; 72: 1047-1052
    • (2003) Am J Hum Genet , vol.72 , pp. 1047-1052
    • Robinson, S.W.1    Morris, C.D.2    Goldmuntz, E.3
  • 4
    • 33748597974 scopus 로고    scopus 로고
    • Additional evidence that PTPN11 mutations play only a minor role in the pathogenesis of non-syndromic atrioventricular canal defect
    • Sarkozy A, Lepri F, Marino B, Pizzuti A, Digilio MC, Dallapiccola B. Additional evidence that PTPN11 mutations play only a minor role in the pathogenesis of non-syndromic atrioventricular canal defect. Am J Med Genet A 2006; 140: 1970-1972
    • (2006) Am J Med Genet A , vol.140 , pp. 1970-1972
    • Sarkozy, A.1    Lepri, F.2    Marino, B.3    Pizzuti, A.4    Digilio, M.C.5    Dallapiccola, B.6
  • 5
    • 67649519781 scopus 로고    scopus 로고
    • Dominant-negative ALK2 allele associates with congenital heart defects
    • Smith KA, Joziasse IC, Chocron S., et al. Dominant-negative ALK2 allele associates with congenital heart defects. Circulation 2009; 119: 3062-3069
    • (2009) Circulation , vol.119 , pp. 3062-3069
    • Smith, K.A.1    Joziasse, I.C.2    Chocron, S.3
  • 6
    • 84861223064 scopus 로고    scopus 로고
    • Rare copy number variants in isolated sporadic and syndromic atrioventricular septal defects
    • Priest JR, Girirajan S, Vu TH, Olson A, Eichler EE, Portman MA. Rare copy number variants in isolated sporadic and syndromic atrioventricular septal defects. Am J Med Genet A 2012; 158A: 1279-1284
    • (2012) Am J Med Genet A , vol.158 A , pp. 1279-1284
    • Priest, J.R.1    Girirajan, S.2    Vu, T.H.3    Olson, A.4    Eichler, E.E.5    Portman, M.A.6
  • 7
    • 84898763352 scopus 로고    scopus 로고
    • UK10K Consortium. Rare variants in NR2F2 cause congenital heart defects in humans
    • Al Turki S, Manickaraj AK, Mercer CL., et al.; UK10K Consortium. Rare variants in NR2F2 cause congenital heart defects in humans. Am J Hum Genet 2014; 94: 574-585
    • (2014) Am J Hum Genet , Issue.94 , pp. 574-585
    • Al Turki, S.1    Manickaraj, A.K.2    Mercer, C.L.3
  • 8
    • 84868618373 scopus 로고    scopus 로고
    • Factors influencing participation in a population-based biorepository for childhood heart disease
    • Papaz T, Safi M, Manickaraj AK., et al. Factors influencing participation in a population-based biorepository for childhood heart disease. Pediatrics 2012; 130: e1198-e1205
    • (2012) Pediatrics , Issue.130 , pp. e1198-e1205
    • Papaz, T.1    Safi, M.2    Manickaraj, A.K.3
  • 9
    • 84888287724 scopus 로고    scopus 로고
    • Impact of prenatal risk factors on congenital heart disease in the current era
    • Fung A, Manlhiot C, Naik S., et al. Impact of prenatal risk factors on congenital heart disease in the current era. J Am Heart Assoc 2013; 2: e000064
    • (2013) J Am Heart Assoc , Issue.2 , pp. e000064
    • Fung, A.1    Manlhiot, C.2    Naik, S.3
  • 11
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R., et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 2011; 43: 491-498
    • (2011) Nat Genet , Issue.43 , pp. 491-498
    • Ma, D.1    Banks, E.2    Poplin, R.3
  • 12
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010; 38: e164
    • (2010) Nucleic Acids Res , Issue.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 13
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population scale sequencing
    • The 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium. A map of human genome variation from population scale sequencing. Nature 2010; 467: 1016-1073
    • (2010) Nature , Issue.467 , pp. 1016-1073
  • 14
    • 0035173378 scopus 로고    scopus 로고
    • DbSNP: The NCBI database of genetic variation
    • Sherry ST, Ward MH, Kholodov M., et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 2001; 29: 308-311
    • (2001) Nucleic Acids Res , vol.29 , pp. 308-311
    • Sherry, S.T.1    Ward, M.H.2    Kholodov, M.3
  • 15
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 2009; 4: 1073-1081
    • (2009) Nat Protoc , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 16
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei IA, Schmidt S, Peshkin L., et al. A method and server for predicting damaging missense mutations. Nat Methods 2010; 7: 248-249
    • (2010) Nat Methods , Issue.7 , pp. 248-249
    • Adzhubei, I.A.1    Schmidt, S.2    Peshkin, L.3
  • 17
    • 74949092081 scopus 로고    scopus 로고
    • Detection of nonneutral substitution rates on mammalian phylogenies
    • Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res 2010; 20: 110-121
    • (2010) Genome Res , Issue.20 , pp. 110-121
    • Pollard, K.S.1    Hubisz, M.J.2    Rosenbloom, K.R.3    Siepel, A.4
  • 18
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel A, Bejerano G, Pedersen JS., et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 2005; 15: 1034-1050
    • (2005) Genome Res , vol.15 , pp. 1034-1050
    • Siepel, A.1    Bejerano, G.2    Pedersen, J.S.3
  • 19
    • 84922628604 scopus 로고    scopus 로고
    • Whole-genome sequencing of quartet families with autism spectrum disorder
    • Yuen RKC, Thirubahindrapuram B, Merico D., et al. Whole-genome sequencing of quartet families with autism spectrum disorder. Nat Med 2015; 21: 185-191
    • (2015) Nat Med , Issue.21 , pp. 185-191
    • Rkc, Y.1    Thirubahindrapuram, B.2    Merico, D.3
  • 20
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC Table Browser data retrieval tool
    • Database issue
    • Karolchik D, Hinrichs AS, Furey TS., et al. The UCSC Table Browser data retrieval tool. Nucleic Acids Res 2004; 32(Database issue): D493-D496
    • (2004) Nucleic Acids Res , vol.32 , pp. D493-D496
    • Karolchik, D.1    Hinrichs, A.S.2    Furey, T.S.3
  • 21
    • 33749379585 scopus 로고    scopus 로고
    • Bone morphogenetic protein receptor 1A signaling is dispensable for hematopoietic development but essential for vessel and atrioventricular endocardial cushion formation
    • Park C, Lavine K, Mishina Y, Deng CX, Ornitz DM, Choi K. Bone morphogenetic protein receptor 1A signaling is dispensable for hematopoietic development but essential for vessel and atrioventricular endocardial cushion formation. Development 2006; 133: 3473-3484
    • (2006) Development , vol.133 , pp. 3473-3484
    • Park, C.1    Lavine, K.2    Mishina, Y.3    Deng, C.X.4    Ornitz, D.M.5    Choi, K.6
  • 22
    • 43649093646 scopus 로고    scopus 로고
    • Endothelial expression of bone morphogenetic protein receptor type 1a is required for atrioventricular valve formation
    • Kaneko K, Li X, Zhang X, Lamberti JJ, Jamieson SW, Thistlethwaite PA. Endothelial expression of bone morphogenetic protein receptor type 1a is required for atrioventricular valve formation. Ann Thorac Surg 2008; 85: 2090-2098
    • (2008) Ann Thorac Surg , vol.85 , pp. 2090-2098
    • Kaneko, K.1    Li, X.2    Zhang, X.3    Lamberti, J.J.4    Jamieson, S.W.5    Thistlethwaite, P.A.6
  • 23
    • 84879001958 scopus 로고    scopus 로고
    • De novo mutations in histone-modifying genes in congenital heart disease
    • Zaidi S, Choi M, Wakimoto H., et al. De novo mutations in histone-modifying genes in congenital heart disease. Nature 2013; 498: 220-223
    • (2013) Nature , Issue.498 , pp. 220-223
    • Zaidi, S.1    Choi, M.2    Wakimoto, H.3
  • 24
    • 4544253309 scopus 로고    scopus 로고
    • NIPBL mutational analysis in 120 individuals with Cornelia de Lange syndrome and evaluation of genotype-phenotype correlations
    • Gillis LA, McCallum J, Kaur M., et al. NIPBL mutational analysis in 120 individuals with Cornelia de Lange syndrome and evaluation of genotype-phenotype correlations. Am J Hum Genet 2004; 75: 610-623
    • (2004) Am J Hum Genet , vol.75 , pp. 610-623
    • Gillis, L.A.1    McCallum, J.2    Kaur, M.3
  • 25
    • 66349088519 scopus 로고    scopus 로고
    • Analysis of congenital heart defects in 87 consecutive patients with Brachmann-de Lange syndrome
    • Selicorni A, Colli AM, Passarini A., et al. Analysis of congenital heart defects in 87 consecutive patients with Brachmann-de Lange syndrome. Am J Med Genet A 2009; 149A: 1268-1272
    • (2009) Am J Med Genet A , vol.149 A , pp. 1268-1272
    • Selicorni, A.1    Colli, A.M.2    Passarini, A.3
  • 26
    • 84866502248 scopus 로고    scopus 로고
    • Congenital heart disease in Cornelia de Lange syndrome: Phenotype and genotype analysis
    • Chatfield KC, Schrier SA, Li J., et al. Congenital heart disease in Cornelia de Lange syndrome: phenotype and genotype analysis. Am J Med Genet A 2012; 158A: 2499-2505
    • (2012) Am J Med Genet A , vol.158 A , pp. 2499-2505
    • Chatfield, K.C.1    Schrier, S.A.2    Li, J.3
  • 27
    • 84938321404 scopus 로고    scopus 로고
    • Cornelia de Lange syndrome
    • updated 27 October 2011
    • Deardorff MA, Clark DM, Krantz ID. Cornelia de Lange syndrome. GeneReviews, 2005 (updated 27 October 2011). http://www.ncbi.nlm.nih.gov/books/NBK1104/.
    • (2005) GeneReviews
    • Ma, D.1    Clark, D.M.2    Krantz, I.D.3
  • 30
    • 78651248502 scopus 로고    scopus 로고
    • CEP152 is a genome maintenance protein disrupted in Seckel syndrome
    • Kalay E, Yigit G, Aslan Y., et al. CEP152 is a genome maintenance protein disrupted in Seckel syndrome. Nat Genet 2011; 43: 23-26
    • (2011) Nat Genet , Issue.43 , pp. 23-26
    • Kalay, E.1    Yigit, G.2    Aslan, Y.3
  • 31
    • 2442676860 scopus 로고    scopus 로고
    • Seckel syndrome associated with atrioventricular canal defect: A case report
    • Ucar B, Kilic Z, Dinleyici EC, Yakut A, Dogruel N. Seckel syndrome associated with atrioventricular canal defect: a case report. Clin Dysmorphol 2004; 13: 53-55
    • (2004) Clin Dysmorphol , vol.13 , pp. 53-55
    • Ucar, B.1    Kilic, Z.2    Dinleyici, E.C.3    Yakut, A.4    Dogruel, N.5
  • 32
    • 0027161887 scopus 로고
    • Cardiac symptoms in 2 patients with Seckel syndrome
    • Rappen U, von Brenndorff AI. [Cardiac symptoms in 2 patients with Seckel syndrome]. Monatsschr Kinderheilkd 1993; 141: 584-586
    • (1993) Monatsschr Kinderheilkd , vol.141 , pp. 584-586
    • Rappen, U.1    Von Brenndorff, A.I.2
  • 33
    • 84857190189 scopus 로고    scopus 로고
    • BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome
    • Breckpot J, Tranchevent LC, Thienpont B., et al. BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome. Eur J Med Genet 2012; 55: 12-16
    • (2012) Eur J Med Genet , Issue.55 , pp. 12-16
    • Breckpot, J.1    Tranchevent, L.C.2    Thienpont, B.3
  • 34
    • 0033514433 scopus 로고    scopus 로고
    • Molecular cloning of FOG-2: A modulator of transcription factor GATA-4 in cardiomyocytes
    • Svensson EC, Tufts RL, Polk CE, Leiden JM. Molecular cloning of FOG-2: a modulator of transcription factor GATA-4 in cardiomyocytes. Proc Natl Acad Sci USA 1999; 96: 956-961
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 956-961
    • Svensson, E.C.1    Tufts, R.L.2    Polk, C.E.3    Leiden, J.M.4
  • 35
    • 0034705318 scopus 로고    scopus 로고
    • FOG-2, a cofactor for GATA transcription factors, is essential for heart morphogenesis and development of coronary vessels from epicardium
    • Tevosian SG, Deconinck AE, Tanaka M., et al. FOG-2, a cofactor for GATA transcription factors, is essential for heart morphogenesis and development of coronary vessels from epicardium. Cell 2000; 101: 729-739
    • (2000) Cell , vol.101 , pp. 729-739
    • Tevosian, S.G.1    Deconinck, A.E.2    Tanaka, M.3
  • 36
    • 0344198634 scopus 로고    scopus 로고
    • Endothelial lineage-mediated loss of the GATA cofactor Friend of GATA 1 impairs cardiac development
    • Katz SG, Williams A, Yang J., et al. Endothelial lineage-mediated loss of the GATA cofactor Friend of GATA 1 impairs cardiac development. Proc Natl Acad Sci USA 2003; 100: 14030-14035
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 14030-14035
    • Katz, S.G.1    Williams, A.2    Yang, J.3
  • 37
    • 84897492341 scopus 로고    scopus 로고
    • Identification of novel significant variants of ZFPM2/FOG2 in non-syndromic Tetralogy of Fallot and double outlet right ventricle in a Chinese Han population
    • Huang X, Niu W, Zhang Z., et al. Identification of novel significant variants of ZFPM2/FOG2 in non-syndromic Tetralogy of Fallot and double outlet right ventricle in a Chinese Han population. Mol Biol Rep 2014; 41: 2671-2677
    • (2014) Mol Biol Rep , Issue.41 , pp. 2671-2677
    • Huang, X.1    Niu, W.2    Zhang, Z.3
  • 38
    • 79960209628 scopus 로고    scopus 로고
    • New mutations in ZFPM2/FOG2 gene in tetralogy of Fallot and double outlet right ventricle
    • De Luca A, Sarkozy A, Ferese R., et al. New mutations in ZFPM2/FOG2 gene in tetralogy of Fallot and double outlet right ventricle. Clin Genet 2011; 80: 184-190
    • (2011) Clin Genet , Issue.80 , pp. 184-190
    • De Luca, A.1    Sarkozy, A.2    Ferese, R.3
  • 39
    • 10744226877 scopus 로고    scopus 로고
    • Mutations of ZFPM2/FOG2 gene in sporadic cases of tetralogy of Fallot
    • Pizzuti A, Sarkozy A, Newton AL., et al. Mutations of ZFPM2/FOG2 gene in sporadic cases of tetralogy of Fallot. Hum Mutat 2003; 22: 372-377
    • (2003) Hum Mutat , vol.22 , pp. 372-377
    • Pizzuti, A.1    Sarkozy, A.2    Newton, A.L.3
  • 40
    • 84867578507 scopus 로고    scopus 로고
    • Synergistic regulation of p53 by Mdm2 and Mdm4 is critical in cardiac endocardial cushion morphogenesis during heart development
    • Zhang Q, He X, Chen L., et al. Synergistic regulation of p53 by Mdm2 and Mdm4 is critical in cardiac endocardial cushion morphogenesis during heart development. J Pathol 2012; 228: 416-428
    • (2012) J Pathol , Issue.228 , pp. 416-428
    • Zhang, Q.1    He, X.2    Chen, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.