메뉴 건너뛰기




Volumn 22, Issue 3, 2016, Pages 298-305

Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer

(19)  Beltran, Himisha a,b   Prandi, Davide c   Mosquera, Juan Miguel a,b   Benelli, Matteo c   Puca, Loredana a   Cyrta, Joanna a   Marotz, Clarisse a   Giannopoulou, Eugenia b   Chakravarthi, Balabhadrapatruni V S K d   Varambally, Sooryanarayana d   Tomlins, Scott A e   Nanus, David M b   Tagawa, Scott T b   Van Allen, Eliezer M f,g   Elemento, Olivier a,b   Sboner, Andrea a,b   Garraway, Levi A f,g,h   Rubin, Mark A a,b   Demichelis, Francesca a,b,c  


Author keywords

[No Author keywords available]

Indexed keywords

ANDROGEN RECEPTOR; BRCA2 PROTEIN; DNA; MESSENGER RNA; PROTEIN MYB; PROTEIN P53; RETINOBLASTOMA PROTEIN; TUMOR SUPPRESSOR PROTEIN;

EID: 84957623685     PISSN: 10788956     EISSN: 1546170X     Source Type: Journal    
DOI: 10.1038/nm.4045     Document Type: Article
Times cited : (1188)

References (68)
  • 2
    • 0036636871 scopus 로고    scopus 로고
    • Studies on prostatic cancer: I. The effect of castration, of estrogen and of androgen injection on serum phosphatases in metastatic carcinoma of the prostate. 1941
    • Huggins, C. & Hodges, C.V. Studies on prostatic cancer: I. the effect of castration, of estrogen and of androgen injection on serum phosphatases in metastatic carcinoma of the prostate. 1941. J. Urol. 168, 9-12 (2002).
    • (2002) J. Urol. , vol.168 , pp. 9-12
    • Huggins, C.1    Hodges, C.V.2
  • 3
    • 1842612441 scopus 로고    scopus 로고
    • Molecular determinants of resistance to antiandrogen therapy
    • Chen, C.D. et al. Molecular determinants of resistance to antiandrogen therapy. Nat. Med. 10, 33-39 (2004).
    • (2004) Nat. Med. , vol.10 , pp. 33-39
    • Chen, C.D.1
  • 4
    • 68049140791 scopus 로고    scopus 로고
    • Starving the addiction: New opportunities for durable suppression of AR signaling in prostate cancer
    • Knudsen, K.E. & Scher, H.I. Starving the addiction: new opportunities for durable suppression of AR signaling in prostate cancer. Clin. Cancer Res. 15, 4792-4798 (2009).
    • (2009) Clin. Cancer Res. , vol.15 , pp. 4792-4798
    • Knudsen, K.E.1    Scher, H.I.2
  • 5
    • 84866770294 scopus 로고    scopus 로고
    • Increased survival with enzalutamide in prostate cancer after chemotherapy
    • Scher, H.I. et al.; AFFIRM Investigators. Increased survival with enzalutamide in prostate cancer after chemotherapy. N. Engl. J. Med. 367, 1187-1197 (2012).
    • (2012) N. Engl. J. Med. , vol.367 , pp. 1187-1197
    • Scher, H.I.1
  • 6
    • 79957443342 scopus 로고    scopus 로고
    • Abiraterone and increased survival in metastatic prostate cancer
    • de Bono, J.S. et al.; COU-AA-301 Investigators. Abiraterone and increased survival in metastatic prostate cancer. N. Engl. J. Med. 364, 1995-2005 (2011).
    • (2011) N. Engl. J. Med. , vol.364 , pp. 1995-2005
    • De Bono, J.S.1
  • 7
    • 84948717393 scopus 로고    scopus 로고
    • Emerging mechanisms of resistance to androgen receptor inhibitors in prostate cancer
    • Watson, P.A. et al. Emerging mechanisms of resistance to androgen receptor inhibitors in prostate cancer. Nat. Rev. Cancer 15, 701-711 (2015).
    • (2015) Nat. Rev. Cancer , vol.15 , pp. 701-711
    • Watson, P.A.1
  • 8
    • 84900836746 scopus 로고    scopus 로고
    • Proposed morphologic classification of prostate cancer with neuroendocrine differentiation
    • Epstein, J.I. et al. Proposed morphologic classification of prostate cancer with neuroendocrine differentiation. Am. J. Surg. Pathol. 38, 756-767 (2014).
    • (2014) Am. J. Surg. Pathol , vol.38 , pp. 756-767
    • Epstein, J.I.1
  • 9
    • 84860168795 scopus 로고    scopus 로고
    • Molecular characterization of neuroendocrine prostate cancer and identification of new drug targets
    • Beltran, H. et al. Molecular characterization of neuroendocrine prostate cancer and identification of new drug targets. Cancer Discov. 1, 487-495 (2011).
    • (2011) Cancer Discov. , vol.1 , pp. 487-495
    • Beltran, H.1
  • 10
    • 33745890595 scopus 로고    scopus 로고
    • Small-cell carcinoma of the prostate: An immunohistochemical study
    • Yao, J.L. et al. Small-cell carcinoma of the prostate: an immunohistochemical study. Am. J. Surg. Pathol. 30, 705-712 (2006).
    • (2006) Am. J. Surg. Pathol , vol.30 , pp. 705-712
    • Yao, J.L.1
  • 11
    • 84871610394 scopus 로고    scopus 로고
    • Challenges in recognizing treatment-related neuroendocrine prostate cancer
    • Beltran, H. et al. Challenges in recognizing treatment-related neuroendocrine prostate cancer. J. Clin. Oncol. 30, e386-e389 (2012).
    • (2012) J. Clin. Oncol. , vol.30 , pp. e386-e389
    • Beltran, H.1
  • 12
    • 84910068141 scopus 로고    scopus 로고
    • Neuroendocrine (small-cell) carcinomas: Why they teach us essential lessons about prostate cancer
    • Aparicio, A. & Tzelepi, V. Neuroendocrine (small-cell) carcinomas: why they teach us essential lessons about prostate cancer. Oncology 28, 831-838 (2014).
    • (2014) Oncology , vol.28 , pp. 831-838
    • Aparicio, A.1    Tzelepi, V.2
  • 13
    • 84894275509 scopus 로고    scopus 로고
    • High-fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development
    • Lin, D. et al. High-fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development. Cancer Res. 74, 1272-1283 (2014).
    • (2014) Cancer Res. , vol.74 , pp. 1272-1283
    • Lin, D.1
  • 14
    • 84908320059 scopus 로고    scopus 로고
    • Neuroendocrine prostate cancer (NEPC) progressing from conventional prostatic adenocarcinoma: Factors associated with time to development of NEPC and survival from NEPC diagnosis-A systematic review and pooled analysis
    • Wang, H.T. et al. Neuroendocrine prostate cancer (NEPC) progressing from conventional prostatic adenocarcinoma: factors associated with time to development of NEPC and survival from NEPC diagnosis-a systematic review and pooled analysis. J. Clin. Oncol. 32, 3383-3390 (2014).
    • (2014) J. Clin. Oncol. , vol.32 , pp. 3383-3390
    • Wang, H.T.1
  • 15
    • 33749433916 scopus 로고    scopus 로고
    • Gene expression signature-based chemical genomic prediction identifies a novel class of HSP90 pathway modulators
    • Hieronymus, H. et al. Gene expression signature-based chemical genomic prediction identifies a novel class of HSP90 pathway modulators. Cancer Cell 10, 321-330 (2006).
    • (2006) Cancer Cell , vol.10 , pp. 321-330
    • Hieronymus, H.1
  • 16
    • 84862650290 scopus 로고    scopus 로고
    • Pathogenesis of prostatic small-cell carcinoma involves the inactivation of the p53 pathway
    • Chen, H. et al. Pathogenesis of prostatic small-cell carcinoma involves the inactivation of the p53 pathway. Endocr. Relat. Cancer 19, 321-331 (2012).
    • (2012) Endocr. Relat. Cancer , vol.19 , pp. 321-331
    • Chen, H.1
  • 17
    • 33748078111 scopus 로고    scopus 로고
    • Synergy of p53 and Rb deficiency in a conditional mouse model for metastatic prostate cancer
    • Zhou, Z. et al. Synergy of p53 and Rb deficiency in a conditional mouse model for metastatic prostate cancer. Cancer Res. 66, 7889-7898 (2006).
    • (2006) Cancer Res. , vol.66 , pp. 7889-7898
    • Zhou, Z.1
  • 18
    • 84896715260 scopus 로고    scopus 로고
    • Rb loss is characteristic of prostatic small-cell neuroendocrine carcinoma
    • Tan, H.L. et al. Rb loss is characteristic of prostatic small-cell neuroendocrine carcinoma. Clin. Cancer Res. 20, 890-903 (2014).
    • (2014) Clin. Cancer Res. , vol.20 , pp. 890-903
    • Tan, H.L.1
  • 19
    • 84863723010 scopus 로고    scopus 로고
    • The mutational landscape of lethal castration-resistant prostate cancer
    • Grasso, C.S. et al. The mutational landscape of lethal castration-resistant prostate cancer. Nature 487, 239-243 (2012).
    • (2012) Nature , vol.487 , pp. 239-243
    • Grasso, C.S.1
  • 20
    • 84930225081 scopus 로고    scopus 로고
    • Integrative clinical genomics of advanced prostate cancer
    • Robinson, D. et al. Integrative clinical genomics of advanced prostate cancer. Cell 161, 1215-1228 (2015).
    • (2015) Cell , vol.161 , pp. 1215-1228
    • Robinson, D.1
  • 21
    • 58249110391 scopus 로고    scopus 로고
    • Ligand-independent androgen receptor variants derived from splicing of cryptic exons signify hormone-refractory prostate cancer
    • Hu, R. et al. Ligand-independent androgen receptor variants derived from splicing of cryptic exons signify hormone-refractory prostate cancer. Cancer Res. 69, 16-22 (2009).
    • (2009) Cancer Res. , vol.69 , pp. 16-22
    • Hu, R.1
  • 22
    • 84907057471 scopus 로고    scopus 로고
    • AR-V7 and resistance to enzalutamide and abiraterone in prostate cancer
    • Antonarakis, E. et al. AR-V7 and resistance to enzalutamide and abiraterone in prostate cancer. N. Engl. J. Med. 371, 1028-1038 (2014).
    • (2014) N. Engl. J. Med. , vol.371 , pp. 1028-1038
    • Antonarakis, E.1
  • 23
    • 84875757638 scopus 로고    scopus 로고
    • Punctuated evolution of prostate cancer genomes
    • Baca, S.C. et al. Punctuated evolution of prostate cancer genomes. Cell 153, 666-677 (2013).
    • (2013) Cell , vol.153 , pp. 666-677
    • Baca, S.C.1
  • 24
    • 84861581164 scopus 로고    scopus 로고
    • Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
    • Barbieri, C.E. et al. Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer. Nat. Genet. 44, 685-689 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 685-689
    • Barbieri, C.E.1
  • 25
    • 84923354398 scopus 로고    scopus 로고
    • Complex MSH2 and MSH6 mutations in hypermutated microsatellite-unstable advanced prostate cancer
    • Pritchard, C.C. et al. Complex MSH2 and MSH6 mutations in hypermutated microsatellite-unstable advanced prostate cancer. Nat. Commun. 25, 4988 (2014).
    • (2014) Nat. Commun. , vol.25 , pp. 4988
    • Pritchard, C.C.1
  • 26
    • 84964314022 scopus 로고    scopus 로고
    • Unraveling the clonal hierarchy of somatic genomic aberrations
    • Prandi, D. et al. Unraveling the clonal hierarchy of somatic genomic aberrations. Genome Biol. 15, 439 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 439
    • Prandi, D.1
  • 27
    • 84946040120 scopus 로고    scopus 로고
    • COSMIC: Exploring the World's knowledge of somatic mutations in human cancer
    • Forbes, S.A. et al. COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res. 43, D805-D811 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D805-D811
    • Forbes, S.A.1
  • 28
    • 84919969091 scopus 로고    scopus 로고
    • The cylindromatosis gene product, CYLD, interacts with MIB2 to regulate notch signaling
    • Rajan, N. et al. The cylindromatosis gene product, CYLD, interacts with MIB2 to regulate Notch signaling. Oncotarget 5, 12126-12140 (2014).
    • (2014) Oncotarget , vol.5 , pp. 12126-12140
    • Rajan, N.1
  • 29
    • 84860284249 scopus 로고    scopus 로고
    • CYLD negatively regulates transforming growth factor-β-signaling via deubiquitinating akt
    • Lim, J.H. et al. CYLD negatively regulates transforming growth factor-β-signaling via deubiquitinating Akt. Nat. Commun. 3, 771 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 771
    • Lim, J.H.1
  • 30
    • 84907485595 scopus 로고    scopus 로고
    • Prostate cancer. Ubiquitylome analysis identifies dysregulation of effector substrates in SPOP-mutant prostate cancer
    • Theurillat, J.P. et al. Prostate cancer. Ubiquitylome analysis identifies dysregulation of effector substrates in SPOP-mutant prostate cancer. Science 346, 85-89 (2014).
    • (2014) Science , vol.346 , pp. 85-89
    • Theurillat, J.P.1
  • 31
    • 84908577858 scopus 로고    scopus 로고
    • Mechanisms underlying cancer growth and apoptosis by DEK overexpression in colorectal cancer
    • Lin, L. et al. Mechanisms underlying cancer growth and apoptosis by DEK overexpression in colorectal cancer. PLoS One 9, e111260 (2014).
    • (2014) PLoS One , vol.9 , pp. e111260
    • Lin, L.1
  • 32
    • 0017167185 scopus 로고
    • The clonal evolution of tumor cell populations
    • Nowell, P.C. The clonal evolution of tumor cell populations. Science 194, 23-28 (1976).
    • (1976) Science , vol.194 , pp. 23-28
    • Nowell, P.C.1
  • 33
    • 33645396945 scopus 로고    scopus 로고
    • Genetic clonal diversity predicts progression to esophageal adenocarcinoma
    • Maley, C.C. et al. Genetic clonal diversity predicts progression to esophageal adenocarcinoma. Nat. Genet. 38, 468-473 (2006).
    • (2006) Nat. Genet. , vol.38 , pp. 468-473
    • Maley, C.C.1
  • 34
    • 65549118291 scopus 로고    scopus 로고
    • Shared TP53 gene mutation in morphologically and phenotypically distinct concurrent primary small-cell neuroendocrine carcinoma and adenocarcinoma of the prostate
    • Hansel, D.E. et al. Shared TP53 gene mutation in morphologically and phenotypically distinct concurrent primary small-cell neuroendocrine carcinoma and adenocarcinoma of the prostate. Prostate 69, 603-609 (2009).
    • (2009) Prostate , vol.69 , pp. 603-609
    • Hansel, D.E.1
  • 35
    • 84928405167 scopus 로고    scopus 로고
    • The evolutionary history of lethal metastatic prostate cancer
    • Gundem, G. et al. The evolutionary history of lethal metastatic prostate cancer. Nature 520, 353-357 (2015).
    • (2015) Nature , vol.520 , pp. 353-357
    • Gundem, G.1
  • 36
    • 84948168577 scopus 로고    scopus 로고
    • A basal stem cell signature identifies aggressive prostate cancer phenotypes
    • Smith, B.A. et al. A basal stem cell signature identifies aggressive prostate cancer phenotypes. Proc. Natl. Acad. Sci. USA 112, E6544-E6552 (2015).
    • (2015) Proc. Natl. Acad. Sci. USA , vol.112 , pp. E6544-E6552
    • Smith, B.A.1
  • 37
    • 84865451304 scopus 로고    scopus 로고
    • The transcription factor SPDEF suppresses prostate tumor metastasis
    • Steffan, J.J. et al. The transcription factor SPDEF suppresses prostate tumor metastasis. J. Biol. Chem. 287, 29968-29978 (2012).
    • (2012) J. Biol. Chem. , vol.287 , pp. 29968-29978
    • Steffan, J.J.1
  • 38
    • 84869992095 scopus 로고    scopus 로고
    • Genome-wide DNA methylation events in TMPRSS2-ERG fusion-negative prostate cancers implicate an EZH2-dependent mechanism with miR-26a hypermethylation
    • Börno, S.T. et al. Genome-wide DNA methylation events in TMPRSS2-ERG fusion-negative prostate cancers implicate an EZH2-dependent mechanism with miR-26a hypermethylation. Cancer Discov. 2, 1024-1035 (2012).
    • (2012) Cancer Discov. , vol.2 , pp. 1024-1035
    • Börno, S.T.1
  • 39
    • 58149239686 scopus 로고    scopus 로고
    • Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer
    • Varambally, S. et al. Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer. Science 322, 1695-1699 (2008).
    • (2008) Science , vol.322 , pp. 1695-1699
    • Varambally, S.1
  • 40
    • 36349017912 scopus 로고    scopus 로고
    • A polycomb repression signature in metastatic prostate cancer predicts cancer outcome
    • Yu, J. et al. A polycomb repression signature in metastatic prostate cancer predicts cancer outcome. Cancer Res. 67, 10657-10663 (2007).
    • (2007) Cancer Res. , vol.67 , pp. 10657-10663
    • Yu, J.1
  • 41
    • 77950874502 scopus 로고    scopus 로고
    • Comprehensive evaluation of the role of EZH2 in the growth, invasion and aggression of a panel of prostate cancer cell lines
    • Karanikolas, B.D., Figueiredo, M.L. & Wu, L. Comprehensive evaluation of the role of EZH2 in the growth, invasion and aggression of a panel of prostate cancer cell lines. Prostate 70, 675-688 (2010).
    • (2010) Prostate , vol.70 , pp. 675-688
    • Karanikolas, B.D.1    Figueiredo, M.L.2    Wu, L.3
  • 42
    • 84983065014 scopus 로고    scopus 로고
    • Polycomb-mediated silencing in neuroendocrine prostate cancer
    • Clermont, P.L. et al. Polycomb-mediated silencing in neuroendocrine prostate cancer. Clin. Epigenetics 7, 40 (2015).
    • (2015) Clin. Epigenetics , vol.7 , pp. 40
    • Clermont, P.L.1
  • 43
    • 79957912993 scopus 로고    scopus 로고
    • EZH2-mediated concordant repression of wnt antagonists promotes β-catenin-dependent hepatocarcinogenesis
    • Cheng, A.S. et al. EZH2-mediated concordant repression of Wnt antagonists promotes β-catenin-dependent hepatocarcinogenesis. Cancer Res. 71, 4028-4039 (2011).
    • (2011) Cancer Res. , vol.71 , pp. 4028-4039
    • Cheng, A.S.1
  • 44
    • 84888803072 scopus 로고    scopus 로고
    • A key role for EZH2 in epigenetic silencing of HOX genes in mantle-cell lymphoma
    • Kanduri, M. et al. A key role for EZH2 in epigenetic silencing of HOX genes in mantle-cell lymphoma. Epigenetics 8, 1280-1288 (2013).
    • (2013) Epigenetics , vol.8 , pp. 1280-1288
    • Kanduri, M.1
  • 45
    • 84947045416 scopus 로고    scopus 로고
    • The placental gene PEG10 promotes progression of neuroendocrine prostate cancer
    • Akamatsu, S. et al. The placental gene PEG10 promotes progression of neuroendocrine prostate cancer. Cell Rep. 12, 922-936 (2015).
    • (2015) Cell Rep. , vol.12 , pp. 922-936
    • Akamatsu, S.1
  • 46
    • 84946195510 scopus 로고    scopus 로고
    • The molecular taxonomy of primary prostate cancer
    • Cancer Genome Atlas Research Network. The molecular taxonomy of primary prostate cancer. Cell 163, 1011-1025 (2015).
    • (2015) Cell , vol.163 , pp. 1011-1025
  • 47
    • 84923284989 scopus 로고    scopus 로고
    • The estrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer
    • Chakravarty, D. et al. The estrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer. Nat. Commun. 5, 5383 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 5383
    • Chakravarty, D.1
  • 48
    • 84907285681 scopus 로고    scopus 로고
    • Tumor clone dynamics in lethal prostate cancer
    • Carreira, S. et al. Tumor clone dynamics in lethal prostate cancer. Sci. Transl. Med. 6, 254ra125 (2014).
    • (2014) Sci. Transl. Med. , vol.6 , pp. 254ra125
    • Carreira, S.1
  • 49
    • 84994777514 scopus 로고    scopus 로고
    • Whole-exome sequencing of metastatic cancer and biomarkers of treatment response
    • Beltran, H. et al. Whole-exome sequencing of metastatic cancer and biomarkers of treatment response. JAMA Oncol. 1, 466-474 (2015).
    • (2015) JAMA Oncol. , vol.1 , pp. 466-474
    • Beltran, H.1
  • 50
    • 84861233447 scopus 로고    scopus 로고
    • Next-generation prostate cancer biobanking: Toward a processing protocol amenable for the international cancer genome consortium
    • Esgueva, R. et al. Next-generation prostate cancer biobanking: toward a processing protocol amenable for the International Cancer Genome Consortium. Diagn. Mol. Pathol. 21, 61-68 (2012).
    • (2012) Diagn. Mol. Pathol. , vol.21 , pp. 61-68
    • Esgueva, R.1
  • 51
    • 84902148239 scopus 로고    scopus 로고
    • Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine
    • Van Allen, E.M. et al. Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. Nat. Med. 20, 682-688 (2014).
    • (2014) Nat. Med. , vol.20 , pp. 682-688
    • Van Allen, E.M.1
  • 52
    • 80052707308 scopus 로고    scopus 로고
    • ContEst: Estimating cross-contamination of human samples in next-generation sequencing data
    • Cibulskis, K. et al. ContEst: estimating cross-contamination of human samples in next-generation sequencing data. Bioinformatics 27, 2601-2602 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2601-2602
    • Cibulskis, K.1
  • 53
    • 42449121422 scopus 로고    scopus 로고
    • SNP panel identification assay (SPIA): A genetic-based assay for the identification of cell lines
    • Demichelis, F. et al. SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines. Nucleic Acids Res. 36, 2446-2456 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2446-2456
    • Demichelis, F.1
  • 54
    • 84874025843 scopus 로고    scopus 로고
    • Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
    • Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 213-219
    • Cibulskis, K.1
  • 55
    • 84925965197 scopus 로고    scopus 로고
    • Oncotator: Cancer variant annotation tool
    • Ramos, A.H. et al. Oncotator: cancer variant annotation tool. Hum. Mutat. 36, E2423-E2429 (2015).
    • (2015) Hum. Mutat. , vol.36 , pp. E2423-E2429
    • Ramos, A.H.1
  • 56
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M.S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 57
  • 58
    • 84871809302 scopus 로고    scopus 로고
    • STAR: Ultrafast universal RNA-seq aligner
    • Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 15-21
    • Dobin, A.1
  • 59
    • 78651426148 scopus 로고    scopus 로고
    • RSEQtools: A modular framework to analyze RNA-seq data using compact, anonymized data summaries
    • Habegger, L. et al. RSEQtools: a modular framework to analyze RNA-seq data using compact, anonymized data summaries. Bioinformatics 27, 281-283 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 281-283
    • Habegger, L.1
  • 60
    • 77954997528 scopus 로고    scopus 로고
    • Antibody-based detection of ERG rearrangement-positive prostate cancer
    • Park, K. et al. Antibody-based detection of ERG rearrangement-positive prostate cancer. Neoplasia 12, 590-598 (2010).
    • (2010) Neoplasia , vol.12 , pp. 590-598
    • Park, K.1
  • 61
    • 77958040520 scopus 로고    scopus 로고
    • FusionSeq: A modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data
    • Sboner, A. et al. FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data. Genome Biol. 11, R104 (2010).
    • (2010) Genome Biol. , vol.11 , pp. R104
    • Sboner, A.1
  • 62
    • 84873048485 scopus 로고    scopus 로고
    • Concurrent AURKA and MYCN gene amplifications are harbingers of lethal treatment-related neuroendocrine prostate cancer
    • Mosquera, J.M. et al. Concurrent AURKA and MYCN gene amplifications are harbingers of lethal treatment-related neuroendocrine prostate cancer. Neoplasia 15, 1-10 (2013).
    • (2013) Neoplasia , vol.15 , pp. 1-10
    • Mosquera, J.M.1
  • 63
    • 84875675666 scopus 로고    scopus 로고
    • Epigenomic alterations in localized and advanced prostate cancer
    • Lin, P.C. et al. Epigenomic alterations in localized and advanced prostate cancer. Neoplasia 15, 373-383 (2013).
    • (2013) Neoplasia , vol.15 , pp. 373-383
    • Lin, P.C.1
  • 64
    • 84866860221 scopus 로고    scopus 로고
    • MethylKit: A comprehensive R package for the analysis of genome-wide DNA methylation profiles
    • Akalin, A. et al. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biol. 13, R87 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R87
    • Akalin, A.1
  • 65
    • 83355177243 scopus 로고    scopus 로고
    • Pybedtools: A flexible python library for manipulating genomic datasets and annotations
    • Dale, R.K., Pedersen, B.S. & Quinlan, A.R. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinformatics 27, 3423-3424 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 3423-3424
    • Dale, R.K.1    Pedersen, B.S.2    Quinlan, A.R.3
  • 66
    • 67849130563 scopus 로고    scopus 로고
    • ToppGene suite for gene list enrichment analysis and candidate gene prioritization
    • Chen, J., Bardes, E.E., Aronow, B.J. & Jegga, A.G. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res. 37, W305-W311 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. W305-W311
    • Chen, J.1    Bardes, E.E.2    Aronow, B.J.3    Jegga, A.G.4
  • 67
    • 32844459336 scopus 로고    scopus 로고
    • The polycomb group protein EZH2 directly controls DNA methylation
    • Viré, E. et al. The Polycomb group protein EZH2 directly controls DNA methylation. Nature 439, 871-874 (2006).
    • (2006) Nature , vol.439 , pp. 871-874
    • Viré, E.1
  • 68
    • 84866002291 scopus 로고    scopus 로고
    • The cBio cancer genomics portal: An open platform for exploring multidimensional cancer genomics data
    • Cerami, E. et al. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2, 401-404 (2012).
    • (2012) Cancer Discov. , vol.2 , pp. 401-404
    • Cerami, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.