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Volumn 31, Issue , 2016, Pages 34-43

Viral metagenomics: Are we missing the giants?

Author keywords

[No Author keywords available]

Indexed keywords

ACANTHAMOEBA CASTELLANII; AMOEBA (LIFE CYCLE STAGE); DNA VIRUS; FAUSTOVIRUS; MARSEILLEVIRIDAE; METAGENOMICS; MIMIVIRIDAE; NONHUMAN; PANDORAVIRIDAE; PHYCODNAVIRIDAE; REVIEW; VIROPHAGE; VIRUS GENOME; VIRUS STRAIN; ANIMAL; CLASSIFICATION; GENETICS; GIANT VIRUS; HUMAN; ISOLATION AND PURIFICATION; PROCEDURES; VIROLOGY;

EID: 84956696379     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2016.01.005     Document Type: Review
Times cited : (23)

References (48)
  • 6
    • 84949657036 scopus 로고    scopus 로고
    • Response of mammalian macrophages to challenge with the chlorovirus acanthocystis turfacea chlorella virus 1
    • Petro T.M., Agarkova I.V., Zhou Y., Yolken R.H., Van Etten J.L., Dunigan D.D. Response of mammalian macrophages to challenge with the chlorovirus acanthocystis turfacea chlorella virus 1. J Virol 2015, 89:12096-12107.
    • (2015) J Virol , vol.89 , pp. 12096-12107
    • Petro, T.M.1    Agarkova, I.V.2    Zhou, Y.3    Yolken, R.H.4    Van Etten, J.L.5    Dunigan, D.D.6
  • 7
    • 48249105419 scopus 로고    scopus 로고
    • Taxonomic distribution of large DNA viruses in the sea
    • Monier A., Claverie J.M., Ogata H. Taxonomic distribution of large DNA viruses in the sea. Genome Biol 2008, 9:R106.
    • (2008) Genome Biol , vol.9 , pp. R106
    • Monier, A.1    Claverie, J.M.2    Ogata, H.3
  • 9
    • 23944516801 scopus 로고    scopus 로고
    • Mimivirus relatives in the Sargasso sea
    • Ghedin E., Claverie J.M. Mimivirus relatives in the Sargasso sea. Virol J 2005, 2:62.
    • (2005) Virol J , vol.2 , pp. 62
    • Ghedin, E.1    Claverie, J.M.2
  • 13
    • 84871399303 scopus 로고    scopus 로고
    • Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals
    • Correa A.M., Welsh R.M., Vega Thurber R.L. Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals. ISME J 2013, 7:13-27.
    • (2013) ISME J , vol.7 , pp. 13-27
    • Correa, A.M.1    Welsh, R.M.2    Vega Thurber, R.L.3
  • 14
    • 84942910954 scopus 로고    scopus 로고
    • Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses
    • Blanc G., Gallot-Lavallee L., Maumus F. Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses. Proc Natl Acad Sci U S A 2015, 112:E5318-E5326.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E5318-E5326
    • Blanc, G.1    Gallot-Lavallee, L.2    Maumus, F.3
  • 15
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - major players in the global ecosystem
    • Suttle C.A. Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 2007, 5:801-812.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 16
    • 84872922002 scopus 로고    scopus 로고
    • Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara
    • Fancello L., Trape S., Robert C., Boyer M., Popgeorgiev N., Raoult D., Desnues C. Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara. ISME J 2013, 7:359-369.
    • (2013) ISME J , vol.7 , pp. 359-369
    • Fancello, L.1    Trape, S.2    Robert, C.3    Boyer, M.4    Popgeorgiev, N.5    Raoult, D.6    Desnues, C.7
  • 19
    • 84908307840 scopus 로고    scopus 로고
    • High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils
    • Zablocki O., van Zyl L., Adriaenssens E.M., Rubagotti E., Tuffin M., Cary S.C., Cowan D. High-level diversity of tailed phages, eukaryote-associated viruses, and virophage-like elements in the metaviromes of antarctic soils. Appl Environ Microbiol 2014, 80:6888-6897.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 6888-6897
    • Zablocki, O.1    van Zyl, L.2    Adriaenssens, E.M.3    Rubagotti, E.4    Tuffin, M.5    Cary, S.C.6    Cowan, D.7
  • 20
    • 35148876440 scopus 로고    scopus 로고
    • Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    • Wegley L., Edwards R., Rodriguez-Brito B., Liu H., Rohwer F. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ Microbiol 2007, 9:2707-2719.
    • (2007) Environ Microbiol , vol.9 , pp. 2707-2719
    • Wegley, L.1    Edwards, R.2    Rodriguez-Brito, B.3    Liu, H.4    Rohwer, F.5
  • 22
    • 83055177100 scopus 로고    scopus 로고
    • Diversity and abundance of single-stranded DNA viruses in human feces
    • Kim M.S., Park E.J., Roh S.W., Bae J.W. Diversity and abundance of single-stranded DNA viruses in human feces. Appl Environ Microbiol 2011, 77:8062-8070.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 8062-8070
    • Kim, M.S.1    Park, E.J.2    Roh, S.W.3    Bae, J.W.4
  • 24
    • 84876274115 scopus 로고    scopus 로고
    • Identification of hepatotropic viruses from plasma using deep sequencing: a next generation diagnostic tool
    • Law J., Jovel J., Patterson J., Ford G., O'Keefe S., Wang W., Meng B., Song D., Zhang Y., Tian Z., et al. Identification of hepatotropic viruses from plasma using deep sequencing: a next generation diagnostic tool. PLoS ONE 2013, 8:e60595.
    • (2013) PLoS ONE , vol.8 , pp. e60595
    • Law, J.1    Jovel, J.2    Patterson, J.3    Ford, G.4    O'Keefe, S.5    Wang, W.6    Meng, B.7    Song, D.8    Zhang, Y.9    Tian, Z.10
  • 28
    • 33646460790 scopus 로고    scopus 로고
    • Laboratory infection of a technician by mimivirus
    • Raoult D., Renesto P., Brouqui P. Laboratory infection of a technician by mimivirus. Ann Intern Med 2006, 144:702-703.
    • (2006) Ann Intern Med , vol.144 , pp. 702-703
    • Raoult, D.1    Renesto, P.2    Brouqui, P.3
  • 30
    • 84928556807 scopus 로고    scopus 로고
    • A new family of hybrid virophages from an animal gut metagenome
    • Yutin N., Kapitonov V.V., Koonin E.V. A new family of hybrid virophages from an animal gut metagenome. Biol Direct 2015, 10:19.
    • (2015) Biol Direct , vol.10 , pp. 19
    • Yutin, N.1    Kapitonov, V.V.2    Koonin, E.V.3
  • 32
    • 84920842319 scopus 로고    scopus 로고
    • Three novel virophage genomes discovered from Yellowstone Lake metagenomes
    • Zhou J., Sun D., Childers A., McDermott T.R., Wang Y., Liles M.R. Three novel virophage genomes discovered from Yellowstone Lake metagenomes. J Virol 2015, 89:1278-1285.
    • (2015) J Virol , vol.89 , pp. 1278-1285
    • Zhou, J.1    Sun, D.2    Childers, A.3    McDermott, T.R.4    Wang, Y.5    Liles, M.R.6
  • 35
    • 84947549860 scopus 로고    scopus 로고
    • The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus
    • Abergel C., Legendre M., Claverie J.M. The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol Rev 2015, 39:779-796.
    • (2015) FEMS Microbiol Rev , vol.39 , pp. 779-796
    • Abergel, C.1    Legendre, M.2    Claverie, J.M.3
  • 36
    • 84887083188 scopus 로고    scopus 로고
    • Alcohol disinfection procedure for isolating giant viruses from contaminated samples
    • Slimani M., Pagnier I., Boughalmi M., Raoult D., La Scola B. Alcohol disinfection procedure for isolating giant viruses from contaminated samples. Intervirology 2013, 56:434-440.
    • (2013) Intervirology , vol.56 , pp. 434-440
    • Slimani, M.1    Pagnier, I.2    Boughalmi, M.3    Raoult, D.4    La Scola, B.5
  • 37
    • 84899471898 scopus 로고    scopus 로고
    • Marine viruses, a genetic reservoir revealed by targeted viromics
    • Martinez Martinez J., Swan B.K., Wilson W.H. Marine viruses, a genetic reservoir revealed by targeted viromics. ISME J 2014, 8:1079-1088.
    • (2014) ISME J , vol.8 , pp. 1079-1088
    • Martinez Martinez, J.1    Swan, B.K.2    Wilson, W.H.3
  • 39
    • 0031721094 scopus 로고    scopus 로고
    • Homology detection via family pairwise search
    • Grundy W.N. Homology detection via family pairwise search. J Comput Biol 1998, 5:479-491.
    • (1998) J Comput Biol , vol.5 , pp. 479-491
    • Grundy, W.N.1
  • 40
    • 74549198854 scopus 로고    scopus 로고
    • Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution
    • Yutin N., Wolf Y.I., Raoult D., Koonin E.V. Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution. Virol J 2009, 6:223.
    • (2009) Virol J , vol.6 , pp. 223
    • Yutin, N.1    Wolf, Y.I.2    Raoult, D.3    Koonin, E.V.4
  • 41
    • 84908399224 scopus 로고    scopus 로고
    • Expanding the Mimiviridae family using asparagine synthase as a sequence bait
    • Mozar M., Claverie J.M. Expanding the Mimiviridae family using asparagine synthase as a sequence bait. Virology 2014, 466-467:112-122.
    • (2014) Virology , pp. 112-122
    • Mozar, M.1    Claverie, J.M.2
  • 42
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy S.R. Profile hidden Markov models. Bioinformatics 1998, 14:755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 43
    • 84856489442 scopus 로고    scopus 로고
    • HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
    • Remmert M., Biegert A., Hauser A., Soding J. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods 2012, 9:173-175.
    • (2012) Nat Methods , vol.9 , pp. 173-175
    • Remmert, M.1    Biegert, A.2    Hauser, A.3    Soding, J.4
  • 45
    • 84908555803 scopus 로고    scopus 로고
    • DNA-dependent RNA polymerase detects hidden giant viruses in published databanks
    • Sharma V., Colson P., Giorgi R., Pontarotti P., Raoult D. DNA-dependent RNA polymerase detects hidden giant viruses in published databanks. Genome Biol Evol 2014, 6:1603-1610.
    • (2014) Genome Biol Evol , vol.6 , pp. 1603-1610
    • Sharma, V.1    Colson, P.2    Giorgi, R.3    Pontarotti, P.4    Raoult, D.5
  • 46
    • 84880032922 scopus 로고    scopus 로고
    • EGN: a wizard for construction of gene and genome similarity networks
    • Halary S., McInerney J.O., Lopez P., Bapteste E. EGN: a wizard for construction of gene and genome similarity networks. BMC Evol Biol 2013, 13:146.
    • (2013) BMC Evol Biol , vol.13 , pp. 146
    • Halary, S.1    McInerney, J.O.2    Lopez, P.3    Bapteste, E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.