-
1
-
-
80055071248
-
A novel bioinformatics pipeline for identification and characterization of f usion transcripts in breast cancer and normal cell lines
-
Asmann YW,Hossain A,Necela BM,Middha S,Kalari KR,Sun Z,Chai HS,Williamson DW,Radisky D,Schroth GP,et al 2011 A novel bioinformatics pipeline for identification and characterization of f usion transcripts in breast cancer and normal cell lines. Nucleic Acids Res 39 e100.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e100
-
-
Asmann, Y.W.1
Hossain, A.2
Necela, B.M.3
Middha, S.4
Kalari, K.R.5
Sun, Z.6
Chai, H.S.7
Williamson, D.W.8
Radisky, D.9
Schroth, G.P.10
-
2
-
-
84860117771
-
De tection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer
-
Asmann YW, Necela BM, Kalari KR, Hossain A, Baker TR, Carr JM, Davis C, Getz JE, Hostetter G, Li X, et al. 2012. De tection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer. Cancer Res 72: 1921- 1928.
-
(2012)
Cancer Res
, vol.72
, pp. 1921-1928
-
-
Asmann, Y.W.1
Necela, B.M.2
Kalari, K.R.3
Hossain, A.4
Baker, T.R.5
Carr, J.M.6
Davis, C.7
Getz, J.E.8
Hostetter, G.9
Li, X.10
-
3
-
-
84902967827
-
Cdna hybrid capture improves transcriptome analysis on low-input and archived samples
-
Cabanski CR, Magrini V, Griffith M, Griffith OL, McGrath S, Zhang J, Walker J, Ly A, Demeter R, Fulton RS, et al. 2014. cDNA hybrid capture improves transcriptome analysis on low-input and archived samples. J Mol Diagn 16: 440-451.
-
(2014)
J Mol Diagn
, vol.16
, pp. 440-451
-
-
Cabanski, C.R.1
Magrini, V.2
Griffith, M.3
Griffith, O.L.4
McGrath, S.5
Zhang, J.6
Walker, J.7
Ly, A.8
Demeter, R.9
Fulton, R.S.10
-
4
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
The Cancer Genome Atlas Network
-
The Cancer Genome Atlas Network. 2012. Comprehensive molecular portraits of human breast tumours. Nature 490: 61-70.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
5
-
-
84874867981
-
State-of-the-Art fusion-fi nder algorithms sensitivity and specificity
-
Carrara M, Beccuti M, Lazzarato F, Cavallo F, Cordero F, Donatelli S, Calogero RA. 2013. State-of-the-Art fusion-fi nder algorithms sensitivity and specificity. BioMed Res Int 2013: 340620.
-
(2013)
BioMed Res Int
, vol.2013
, pp. 340620
-
-
Carrara, M.1
Beccuti, M.2
Lazzarato, F.3
Cavallo, F.4
Cordero, F.5
Donatelli, S.6
Calogero, R.A.7
-
6
-
-
69549116107
-
Breakdancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, et al. 2009. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods 6: 677-681.
-
(2009)
Nat Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
McGrath, S.D.7
Wendl, M.C.8
Zhang, Q.9
Locke, D.P.10
-
7
-
-
84864143346
-
Breakfusion: Targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data
-
Chen K, Wallis JW, Kandoth C, Kalicki-Veizer JM, Mungall KL, Mungall AJ, Jo nes SJ, Marra MA, Ley TJ, Mardis ER, et al. 2012. BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. Bioinformatics 28: 1923 -1924.
-
(2012)
Bioinformatics
, vol.28
, pp. 1923-1924
-
-
Chen, K.1
Wallis, J.W.2
Kandoth, C.3
Kalicki-Veizer, J.M.4
Mungall, K.L.5
Mungall, A.J.6
Jones, S.J.7
Marra, M.A.8
Ley, T.J.9
Mardis, E.R.10
-
8
-
-
84883886534
-
Breaktrans: Uncovering the genomic architecture of gene fusions
-
Chen K, Navin NE, Wang Y, Schmidt HK, Wallis JW, Niu B, Fan X, Zhao H, McLellan MD, Hoadley KA, et al. 2013. BreakTrans: uncovering the genomic architecture of gene fusions. Genome Biol 14: R87.
-
(2013)
Genome Biol
, vol.14
, pp. R87
-
-
Chen, K.1
Navin, N.E.2
Wang, Y.3
Schmidt, H.K.4
Wallis, J.W.5
Niu, B.6
Fan, X.7
Zhao, H.8
McLellan, M.D.9
Hoadley, K.A.10
-
9
-
-
84871809302
-
Star ultrafast universal RNA-seq aligner
-
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. 2013. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29: 15-21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
10
-
-
33845444046
-
Fiveyear follow-up of patients receiving imatinib for chronic myeloid leuke mia
-
Dru ker BJ, Guilhot F, O'Brien SG, Gathmann I, Kantarjian H, Gattermann N, Deininger MW, Silver RT, Goldman JM, Stone RM, et al. 2006. Fiveyear follow-up of patients receiving imatinib for chronic myeloid leuke mia. N Engl J Med 355: 2408-2417.
-
(2006)
N Engl J Med
, vol.355
, pp. 2408-2417
-
-
Dru ker, B.J.1
Guilhot, F.2
O'Brien, S.G.3
Gathmann, I.4
Kantarjian, H.5
Gattermann, N.6
Deininger, M.W.7
Silver, R.T.8
Goldman, J.M.9
Stone, R.M.10
-
11
-
-
78651486046
-
Identificati on of fusion genes in breast cancer by paired-end RNA-sequencing
-
Edgren H, Murumagi A, Kangaspeska S, Nicorici D, Hongisto V, Kleivi K, Rye IH, Nyberg S, Wolf M, Borresen-Dale AL, et al. 2011. Identificati on of fusion genes in breast cancer by paired-end RNA-sequencing. Genome Biol 12: R6.
-
(2011)
Genome Biol
, vol.12
, pp. R6
-
-
Edgren, H.1
Murumagi, A.2
Kangaspeska, S.3
Nicorici, D.4
Hongisto, V.5
Kleivi, K.6
Rye, I.H.7
Nyberg, S.8
Wolf, M.9
Borresen-Dale, A.L.10
-
12
-
-
84939129092
-
Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data
-
Fernandez-Cuesta L, Sun R, Menon R, George J, Lorenz S, Meza-Zepeda LA, Peifer M, Plenker D, Heuckmann JM, Leenders F, et al. 2015. Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data. Genome Biol 16: 7.
-
(2015)
Genome Biol
, vol.16
, pp. 7
-
-
Fernandez-Cuesta, L.1
Sun, R.2
Menon, R.3
George, J.4
Lorenz, S.5
Meza-Zepeda, L.A.6
Peifer, M.7
Plenker, D.8
Heuckmann, J.M.9
Leenders, F.10
-
13
-
-
77954205450
-
Next-generation variationhunter: Combinatorial algorithms for transposon insertion discovery
-
Hormozdiari F, Hajirasouliha I, Dao P, Hach F , Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. 2010. Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics 26: i350-i357.
-
(2010)
Bioinformatics
, vol.26
, pp. i350-i357
-
-
Hormozdiari, F.1
Hajirasouliha, I.2
Dao, P.3
Hach, F.4
Yorukoglu, D.5
Alkan, C.6
Eichler, E.E.7
Sahinalp, S.C.8
-
14
-
-
80054003528
-
Chimerascan: A tool for identifying chimeric transcription in sequencing data
-
Iyer MK, Chinnaiyan AM, Maher CA. 2011. ChimeraScan: a tool for identifying chimeric transcription in sequencing data. Bioinformatics 27: 2903-2904.
-
(2011)
Bioinformatics
, vol.27
, pp. 2903-2904
-
-
Iyer, M.K.1
Chinnaiyan, A.M.2
Maher, C.A.3
-
15
-
-
84870460670
-
P rism: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants
-
Jiang Y, Wang Y, Brudno M. 2012. P RISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants. Bioinformatics 28: 2576-2583.
-
(2012)
Bioinformatics
, vol.28
, pp. 2576-2583
-
-
Jiang, Y.1
Wang, Y.2
Brudno, M.3
-
16
-
-
84865214708
-
Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer
-
Kalyana-Sundaram S, Shankar S, Deroo S, Iyer MK, Palanisamy N, ChinnaiyanAM, Kumar-Sinha C. 2012. Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer. Neoplasia 14: 702-708.
-
(2012)
Neoplasia
, vol.14
, pp. 702-708
-
-
Kalyana-Sundaram, S.1
Shankar, S.2
Deroo, S.3
Iyer, M.K.4
Palanisamy, N.5
Chinnaiyan, A.M.6
Kumar-Sinha, C.7
-
17
-
-
80051507403
-
Top hat-fusion: An algorithm for discovery of novel fusion transcripts
-
Kim D, Salzberg SL. 2011. Top Hat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biol 12: R72.
-
(2011)
Genome Biol
, vol.12
, pp. R72
-
-
Kim, D.1
Salzberg, S.L.2
-
18
-
-
84876996918
-
Tophat2: Accurate alignment of transcri ptomes in the presence of insertions, deletions and gene fusions
-
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. 2013. TopHat2: accurate alignment of transcri ptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14: R36.
-
(2013)
Genome Biol
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
19
-
-
80053370933
-
High-throughput detection of fusion genes in cancer using the sequenom massarray platform
-
Lambros MBK, Wilkerson PM, Natrajan R, Patani N, Pawar V, Vatcheva R, Mansour M, Laschet M, Oelze B, Orr N, et al. 2011. High-throughput detection of fusion genes in cancer using the Sequenom MassARRAY platform. Lab Invest 91: 1491-1501.
-
(2011)
Lab Invest
, vol.91
, pp. 1491-1501
-
-
Lambros, M.B.K.1
Wilkerson, P.M.2
Natrajan, R.3
Patani, N.4
Pawar, V.5
Vatcheva, R.6
Mansour, M.7
Laschet, M.8
Oelze, B.9
Orr, N.10
-
20
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
21
-
-
84884559238
-
Endocrine-therapy-resistant esr1 va riants revealed by genomic characterization of breast-cancer-derived xenografts
-
Li S, Shen D, Shao J, Crowder R, LiuW, Prat A, He X, Liu S, Hoog J, Lu C, et al. 2013. Endocrine-therapy-resistant ESR1 va riants revealed by genomic characterization of breast-cancer-derived xenografts. Cell Rep 4: 1116-1130.
-
(2013)
Cell Rep
, vol.4
, pp. 1116-1130
-
-
Li, S.1
Shen, D.2
Shao, J.3
Crowder, R.4
Liu, W.5
Prat, A.6
He, X.7
Liu, S.8
Hoog, J.9
Lu, C.10
-
22
-
-
62049085786
-
Transcriptome sequencing to detect gene fusions in cancer
-
Maher CA, Kumar-Sinha C, Cao X, Kalyana-Sundaram S, Han B, Jing X, Sam L, Barrette T, Palani samy N, Chinnaiyan AM. 2009. Transcriptome sequencing to detect gene fusions in cancer. Nature 458: 97-101.
-
(2009)
Nature
, vol.458
, pp. 97-101
-
-
Maher, C.A.1
Kumar-Sinha, C.2
Cao, X.3
Kalyana-Sundaram, S.4
Han, B.5
Jing, X.6
Sam, L.7
Barrette, T.8
Palanisamy, N.9
Chinnaiyan, A.M.10
-
23
-
-
70149093912
-
Recurring mutations found by sequencing an acute myeloid leukemia genome
-
Mardis ER,Ding L,Dooling DJ,Larson DE,McLellan MD,Chen K,Koboldt DC,Fulton RS,Delehaunty KD,McGrath SD,et al. 2009 Recurring mutations found by sequencing an acute myeloid leukemia genome New Engl J Med 361 1058-1066.
-
(2009)
New Engl J Med
, vol.361
, pp. 1058-1066
-
-
Mardis, E.R.1
Ding, L.2
Dooling, D.J.3
Larson, D.E.4
McLellan, M.D.5
Chen, K.6
Koboldt, D.C.7
Fulton, R.S.8
Delehaunty, K.D.9
McGrath, S.D.10
-
24
-
-
79957829805
-
Defuse: An algorithm for gene fusion discovery in tumor RNA-seq data
-
McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, et al. 2011a. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Comput Biol 7: e1001138.
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1001138
-
-
McPherson, A.1
Hormozdiari, F.2
Zayed, A.3
Giuliany, R.4
Ha, G.5
Sun, M.G.6
Griffith, M.7
Heravi Moussavi, A.8
Senz, J.9
Melnyk, N.10
-
25
-
-
79957875348
-
Comrad: Detection of expressed rearrangements by integrated analysis of RNA-seq and low co verage genome sequence data
-
McPherson A, Wu C, Hajirasouliha I, Hormozdiari F, Hach F, Lapuk A, Volik S, Shah S, Collins C, Sahinalp SC. 2011b. Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low co verage genome sequence data. Bioinformatics 27: 1481-1488.
-
(2011)
Bioinformatics
, vol.27
, pp. 1481-1488
-
-
McPherson, A.1
Wu, C.2
Hajirasouliha, I.3
Hormozdiari, F.4
Hach, F.5
Lapuk, A.6
Volik, S.7
Shah, S.8
Collins, C.9
Sahinalp, S.C.10
-
26
-
-
84868332770
-
Nfuse: Discovery of complex genomic rearrangements in cancer using high-throug hput sequencing
-
McPherson A, Wu C, Wyatt AW, Shah S, Collins C, Sahinalp SC. 2012. nFuse: discovery of complex genomic rearrangements in cancer using high-throug hput sequencing. Genome Res 22: 2250-2261.
-
(2012)
Genome Res
, vol.22
, pp. 2250-2261
-
-
McPherson, A.1
Wu, C.2
Wyatt, A.W.3
Shah, S.4
Collins, C.5
Sahinalp, S.C.6
-
27
-
-
84895929400
-
Characteri zation of the genomic features and expressed fusion genes in micropapillary carcinomas of the breast
-
Natrajan R, Wilkerson PM, Marchio C, Piscuoglio S, Ng CK, Wai P, Lambros MB, Samartzis EP, Dedes KJ, Frankum J, et al. 2014. Characteri zation of the genomic features and expressed fusion genes in micropapillary carcinomas of the breast. J Pathol 232: 553-565.
-
(2014)
J Pathol
, vol.232
, pp. 553-565
-
-
Natrajan, R.1
Wilkerson, P.M.2
Marchio, C.3
Piscuoglio, S.4
Ng, C.K.5
Wai, P.6
Lambros, M.B.7
Samartzis, E.P.8
Dedes, K.J.9
Frankum, J.10
-
28
-
-
84978021424
-
Fusioncatcher-A tool for finding somatic fusion genes in paired-end RNA-sequencing data
-
Nicorici D, Satalan M, Edgren H, Kangaspeska S, Murumagi A, Kallioniemi O, Virtanen S, Kilkku O. 2014. FusionCatcher-A tool for finding somatic fusion genes in paired-end RNA-sequencing data. bioRxiv doi: http ://dx. doi.org/10.1101/011650.
-
(2014)
BioRxiv Doi
-
-
Nicorici, D.1
Satalan, M.2
Edgren, H.3
Kangaspeska, S.4
Murumagi, A.5
Kallioniemi, O.6
Virtanen, S.7
Kilkku, O.8
-
29
-
-
84894231823
-
Landscape of genomic alterations in cervical ca rcinomas
-
Ojesina AI, Lichtenstein L, Freeman SS, Pedamallu CS, Imaz-Rosshandler I, Pugh TJ, Cherniack AD, Ambrogio L, Cibulskis K, Bertelsen B, et al. 2014. Landscape of genomic alterations in cervical ca rcinomas. Nature 506: 371-375.
-
(2014)
Nature
, vol.506
, pp. 371-375
-
-
Ojesina, A.I.1
Lichtenstein, L.2
Freeman, S.S.3
Pedamallu, C.S.4
Imaz-Rosshandler, I.5
Pugh, T.J.6
Cherniack, A.D.7
Ambrogio, L.8
Cibulskis, K.9
Bertelsen, B.10
-
30
-
-
0024537679
-
The ets family of genes: Mole cular biology and functional implications
-
Papas TS, Fisher RJ, Bhat N, Fujiwara S, Watson DK, Lautenberger J, Seth A, Chen ZQ, Burdett L, Pribyl L, et al. 1989. The ets family of genes: mole cular biology and functional implications. Curr Top Microbiol Immunol 149: 143-147.
-
(1989)
Curr Top Microbiol Immunol
, vol.149
, pp. 143-147
-
-
Papas, T.S.1
Fisher, R.J.2
Bhat, N.3
Fujiwara, S.4
Watson, D.K.5
Lautenberger, J.6
Seth, A.7
Chen, Z.Q.8
Burdett, L.9
Pribyl, L.10
-
31
-
-
84856091317
-
Functionally recurrent rearrangements of the mast kinase and notch gene families in breast cancer
-
Robinson DR, Kalyana-Sundaram S, Wu YM, Shankar S, Cao X, Ateeq B, Asangani IA, Iyer M, Maher CA, Grass o CS, et al. 2011. Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer. Nat Med 17: 1646-1651.
-
(2011)
Nat Med
, vol.17
, pp. 1646-1651
-
-
Robinson, D.R.1
Kalyana-Sundaram, S.2
Wu, Y.M.3
Shankar, S.4
Cao, X.5
Ateeq, B.6
Asangani, I.A.7
Iyer, M.8
Maher, C.A.9
Grass, O.C.S.10
-
32
-
-
84861141246
-
RNA-seq mapping and detection of gene fusions with a suffix array algorithm
-
Sakarya O, Breu H, Radovich M, Chen Y, Wang YN, Barba cioru C, Utiramerur S, Whitley PP, Brockman JP, Vatta P, et al. 2012. RNA-Seq mapping and detection of gene fusions with a suffix array algorithm. PLoS Comput Biol 8: e1002464.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002464
-
-
Sakarya, O.1
Breu, H.2
Radovich, M.3
Chen, Y.4
Wang, Y.N.5
Barbacioru, C.6
Utiramerur, S.7
Whitley, P.P.8
Brockman, J.P.9
Vatta, P.10
-
33
-
-
72949119310
-
Complex landscapes of somatic rearrangement in human breast cancer genomes
-
Stephens PJ, McBr ide DJ, Lin ML, Varela I, Pleasance ED, Simpson JT, Stebbings LA, Leroy C, Edkins S, Mudie LJ, et al. 2009. Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature 462: 1005-1010.
-
(2009)
Nature
, vol.462
, pp. 1005-1010
-
-
Stephens, P.J.1
McBride, D.J.2
Lin, M.L.3
Varela, I.4
Pleasance, E.D.5
Simpson, J.T.6
Stebbings, L.A.7
Leroy, C.8
Edkins, S.9
Mudie, L.J.10
-
35
-
-
84857985225
-
Ret, ros1 and alk fusions in lung cancer
-
Takeuchi K, Soda M, Togashi Y, Suz uki R, Sakata S, Hatano S, Asaka R, Hamanaka W, Ninomiya H, Uehara H, et al. 2012. RET, ROS1 and ALK fusions in lung cancer. Nat Med 18: 378-381.
-
(2012)
Nat Med
, vol.18
, pp. 378-381
-
-
Takeuchi, K.1
Soda, M.2
Togashi, Y.3
Suzuki, R.4
Sakata, S.5
Hatano, S.6
Asaka, R.7
Hamanaka, W.8
Ninomiya, H.9
Uehara, H.10
-
36
-
-
34547642493
-
Distinct classes of chromosomal rearrangements create oncogenic ets gene fusions in prostate cancer
-
Tomlins SA, Laxman B, Dhanasekaran SM, Hel geson BE, Cao X, Morris DS, Menon A, Jing X, Cao Q, Han B, et al. 2007. Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer. Nature 448: 595-599.
-
(2007)
Nature
, vol.448
, pp. 595-599
-
-
Tomlins, S.A.1
Laxman, B.2
Dhanasekaran, S.M.3
Helgeson, B.E.4
Cao, X.5
Morris, D.S.6
Menon, A.7
Jing, X.8
Cao, Q.9
Han, B.10
-
37
-
-
84904994551
-
Prada: Pipeline for RNA sequencing data analysis
-
Torres-GarciaW, Zheng S, Sivachenko A, Vegesna R, Wang Q, Yao R, Berger MF, Weinstein JN, Getz G, Verhaak RG. 2014. PRADA: pipeline for RNA sequencing data analysis. Bioinformatics 30: 2224-2226 .
-
(2014)
Bioinformatics
, vol.30
, pp. 2224-2226
-
-
Torres-Garcia, W.1
Zheng, S.2
Sivachenko, A.3
Vegesna, R.4
Wang, Q.5
Yao, R.6
Berger, M.F.7
Weinstein, J.N.8
Getz, G.9
Verhaak, R.G.10
-
38
-
-
84904102336
-
Recurrent readthrough fusion transcripts in breast cancer
-
Varley KE, Gertz J, Roberts BS, Davis NS, Bowling KM, Kirby MK, Nesmith AS, Oliver PG, Grizzle WE, Forero A, et al. 2014. Recurrent readthrough fusion transcripts in breast cancer. Breast Cancer Res Treat 146: 287-297.
-
(2014)
Breast Cancer Res Treat
, vol.146
, pp. 287-297
-
-
Varley, K.E.1
Gertz, J.2
Roberts, B.S.3
Davis, N.S.4
Bowling, K.M.5
Kirby, M.K.6
Nesmith, A.S.7
Oliver, P.G.8
Grizzle, W.E.9
Forero, A.10
-
39
-
-
84907342217
-
Recurrent esr1-ccdc170 rear rangements in an aggressive subset of oestrogen receptor-positive breast cancers
-
Veeraraghavan J, Tan Y, Cao XX, Kim JA, Wang X, Chamness GC, Maiti SN, Cooper LJ, Edwards DP, Contreras A, et al. 2014. Recurrent ESR1-CCDC170 rear rangements in an aggressive subset of oestrogen receptor-positive breast cancers. Nat Commun 5: 4577.
-
(2014)
Nat Commun
, vol.5
, pp. 4577
-
-
Veeraraghavan, J.1
Tan, Y.2
Cao, X.X.3
Kim, J.A.4
Wang, X.5
Chamness, G.C.6
Maiti, S.N.7
Cooper, L.J.8
Edwards, D.P.9
Contreras, A.10
-
40
-
-
79961007031
-
Crest maps somatic structural variation in cancer genomes with base-pair resolution
-
Wang J, Mullighan CG, Easton J, Roberts S, Heatley SL, Ma J, Rusch MC, Chen K, Harris CC, Ding L, et al. 2011. CREST maps somatic structural variation in cancer genomes with base-pair resolution. Nat Methods 8: 652-654.
-
(2011)
Nat Methods
, vol.8
, pp. 652-654
-
-
Wang, J.1
Mullighan, C.G.2
Easton, J.3
Roberts, S.4
Heatley, S.L.5
Ma, J.6
Rusch, M.C.7
Chen, K.8
Harris, C.C.9
Ding, L.10
-
41
-
-
84871256210
-
New fusion transcripts identified in normal karyotype acute myeloid leukemia
-
Wen H, Li Y, Malek SN, Kim YC, Xu J, Chen P, Xiao F, Huang X, Zhou X, Xuan Z, et al. 2012. New fusion transcripts identified in normal karyotype acute myeloid leukemia. PLoS One 7: e512 03.
-
(2012)
PLoS One
, vol.7
, pp. e51203
-
-
Wen, H.1
Li, Y.2
Malek, S.N.3
Kim, Y.C.4
Xu, J.5
Chen, P.6
Xiao, F.7
Huang, X.8
Zhou, X.9
Xuan, Z.10
-
42
-
-
77951820899
-
Fast and snp-tolerant detection of complex variants and splicing in short reads
-
Wu TD, Nacu S. 2010. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26: 873-881.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
43
-
-
84866313567
-
Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation
-
Zhang Y, Gong M, Yuan H, Park HG, Frierson HF, Li H. 2012. Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation. Cancer Discov 2: 598-607.
-
(2012)
Cancer Discov
, vol.2
, pp. 598-607
-
-
Zhang, Y.1
Gong, M.2
Yuan, H.3
Park, H.G.4
Frierson, H.F.5
Li, H.6
|