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Volumn 30, Issue 15, 2014, Pages 2224-2226

PRADA: Pipeline for RNA sequencing data analysis

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

EID: 84904994551     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu169     Document Type: Article
Times cited : (128)

References (12)
  • 1
    • 77950633122 scopus 로고    scopus 로고
    • Integrative analysis of the melanoma transcriptome
    • Berger, M.F. et al. (2010) Integrative analysis of the melanoma transcriptome. Genome Res. 20, 413-427.
    • (2010) Genome Res. , vol.20 , pp. 413-427
    • Berger, M.F.1
  • 2
    • 84879890360 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of clear cell renal cell carcinoma
    • Cancer Genome Atlas Research Network.
    • Cancer Genome Atlas Research Network. (2013) Comprehensive molecular characterization of clear cell renal cell carcinoma. Nature, 499, 43-49.
    • (2013) Nature , vol.499 , pp. 43-49
  • 3
    • 84861743958 scopus 로고    scopus 로고
    • RNA-SeQC: RNA-seq metrics for quality control and process optimization
    • DeLuca, D.S. et al. (2012) RNA-SeQC: RNA-seq metrics for quality control and process optimization. Bioinformatics, 28, 1530-1532.
    • (2012) Bioinformatics , vol.28 , pp. 1530-1532
    • DeLuca, D.S.1
  • 4
    • 39749197456 scopus 로고    scopus 로고
    • Genotype, haplotype and copy-number variation in worldwide human populations
    • Jakobsson, M. et al. (2008) Genotype, haplotype and copy-number variation in worldwide human populations. Nature, 451, 998-1003.
    • (2008) Nature , vol.451 , pp. 998-1003
    • Jakobsson, M.1
  • 5
    • 80051507403 scopus 로고    scopus 로고
    • TopHat-Fusion: An algorithm for discovery of novel fusion transcripts
    • Kim, D. and Salzberg, S.L. (2012) TopHat-Fusion: An algorithm for discovery of novel fusion transcripts. Genome Biol., 12, R72.
    • (2012) Genome Biol. , vol.12
    • Kim, D.1    Salzberg, S.L.2
  • 6
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with burrows wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 7
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 8
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: AMapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. (2010) The genome analysis toolkit: AMapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 9
    • 79957829805 scopus 로고    scopus 로고
    • DeFuse: An algorithm for gene fusion discovery in tumor RNA-Seq data
    • McPherson, A. et al. (2011) deFuse: An algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Comput. Biol., 7, e1001138.
    • (2011) PLoS Comput. Biol. , vol.7
    • McPherson, A.1
  • 10
    • 84865805666 scopus 로고    scopus 로고
    • Transforming fusions of FGFR and TACC genes in human glioblastoma
    • Singh, D. et al. (2012) Transforming fusions of FGFR and TACC genes in human glioblastoma. Science, 377, 1231-1235.
    • (2012) Science , vol.377 , pp. 1231-1235
    • Singh, D.1
  • 11
    • 73649123907 scopus 로고    scopus 로고
    • Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
    • Verhaak, R.G.W. et al. (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell, 17, 98-110.
    • (2010) Cancer Cell , vol.17 , pp. 98-110
    • Verhaak, R.G.W.1
  • 12
    • 84879764400 scopus 로고    scopus 로고
    • A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival
    • Zheng, S. et al. (2013) A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival. Genes Dev., 27, 1462-1472.
    • (2013) Genes Dev. , vol.27 , pp. 1462-1472
    • Zheng, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.