-
1
-
-
0028032302
-
Alignment and sensitive detection of DNA by a moving interface
-
Bensimon, A. et al. Alignment and sensitive detection of DNA by a moving interface. Science 265, 2096-2098 (1994).
-
(1994)
Science
, vol.265
, pp. 2096-2098
-
-
Bensimon, A.1
-
2
-
-
13044316665
-
Dynamic molecular combing: Stretching the whole human genome for high-resolution studies
-
Michalet, X. et al. Dynamic molecular combing: stretching the whole human genome for high-resolution studies. Science 277, 1518-1523 (1997).
-
(1997)
Science
, vol.277
, pp. 1518-1523
-
-
Michalet, X.1
-
3
-
-
0035907338
-
Aphidicolin triggers a block to replication origin firing in Xenopus egg extracts
-
Marheineke, K. & Hyrien, O. Aphidicolin triggers a block to replication origin firing in Xenopus egg extracts. J Biol Chem 276, 17092-17100, doi:10. 1074/jbc. M100271200 (2001).
-
(2001)
J Biol Chem
, vol.276
, pp. 17092-17100
-
-
Marheineke, K.1
Hyrien, O.2
-
4
-
-
30044438457
-
DNA replication origins fire stochastically in fission yeast
-
Patel, P. K., Arcangioli, B., Baker, S. P., Bensimon, A. & Rhind, N. DNA replication origins fire stochastically in fission yeast. Mol Biol Cell 17, 308-316, doi:10. 1091/mbc. E05-07-0657 (2006).
-
(2006)
Mol Biol Cell
, vol.17
, pp. 308-316
-
-
Patel, P.K.1
Arcangioli, B.2
Baker, S.P.3
Bensimon, A.4
Rhind, N.5
-
5
-
-
36348988518
-
DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI
-
Czajkowsky, D. M., Liu, J., Hamlin, J. L. & Shao, Z. DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI. J Mol Biol 375, 12-19, doi:10. 1016/j. jmb. 2007. 10. 046 (2008).
-
(2008)
J Mol Biol
, vol.375
, pp. 12-19
-
-
Czajkowsky, D.M.1
Liu, J.2
Hamlin, J.L.3
Shao, Z.4
-
6
-
-
34547138714
-
Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules
-
Kim, J. H. & Larson, R. G. Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules. Nucleic Acids Res 35, 3848-3858, doi:10. 1093/nar/gkm332 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3848-3858
-
-
Kim, J.H.1
Larson, R.G.2
-
7
-
-
0037197841
-
Observation by fluorescence microscopy of transcription on single combed DNA
-
Gueroui, Z., Place, C., Freyssingeas, E. & Berge, B. Observation by fluorescence microscopy of transcription on single combed DNA. Proc Natl Acad Sci USA 99, 6005-6010, doi:10. 1073/pnas. 092561399 (2002).
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6005-6010
-
-
Gueroui, Z.1
Place, C.2
Freyssingeas, E.3
Berge, B.4
-
8
-
-
0034979536
-
Identification of a large rearrangement of the BRCA1 gene using colour bar code on combed DNA in an American breast/ovarian cancer family previously studied by direct sequencing
-
Gad, S. et al. Identification of a large rearrangement of the BRCA1 gene using colour bar code on combed DNA in an American breast/ovarian cancer family previously studied by direct sequencing. J Med Genet 38, 388-392 (2001).
-
(2001)
J Med Genet
, vol.38
, pp. 388-392
-
-
Gad, S.1
-
9
-
-
0842285397
-
Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments
-
Koszul, R., Caburet, S., Dujon, B. & Fischer, G. Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments. EMBO J 23, 234-243, doi:10. 1038/sj. emboj. 7600024 (2004).
-
(2004)
EMBO J
, vol.23
, pp. 234-243
-
-
Koszul, R.1
Caburet, S.2
Dujon, B.3
Fischer, G.4
-
10
-
-
0036791653
-
Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus
-
Pasero, P., Bensimon, A. & Schwob, E. Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus. Genes Dev 16, 2479-2484, doi:10. 1101/gad. 232902 (2002).
-
(2002)
Genes Dev
, vol.16
, pp. 2479-2484
-
-
Pasero, P.1
Bensimon, A.2
Schwob, E.3
-
11
-
-
22544454138
-
DNA replication origin plasticity and perturbed fork progression in human inverted repeats
-
Lebofsky, R. & Bensimon, A. DNA replication origin plasticity and perturbed fork progression in human inverted repeats. Mol Cell Biol 25, 6789-6797, doi:10. 1128/MCB. 25. 15. 6789-6797. 2005 (2005).
-
(2005)
Mol Cell Biol
, vol.25
, pp. 6789-6797
-
-
Lebofsky, R.1
Bensimon, A.2
-
12
-
-
84906101503
-
Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork
-
Georgescu, R. E. et al. Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork. Nat Struct Mol Biol 21, 664-670, doi:10. 1038/nsmb. 2851 (2014).
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 664-670
-
-
Georgescu, R.E.1
-
13
-
-
77957168933
-
Eukaryotic DNA replication origins: Many choices for appropriate answers
-
Mechali, M. Eukaryotic DNA replication origins: many choices for appropriate answers. Nat Rev Mol Cell Biol 11, 728-738, doi:10. 1038/nrm2976 (2010).
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 728-738
-
-
Mechali, M.1
-
14
-
-
0035812808
-
Replication dynamics of the yeast genome
-
Raghuraman, M. K. et al. Replication dynamics of the yeast genome. Science 294, 115-121, doi:10. 1126/science. 294. 5540. 115 (2001).
-
(2001)
Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
-
15
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger, C., Penkett, C. J., Bahler, J. & Nurse, P. Genome-wide characterization of fission yeast DNA replication origins. EMBO J 25, 5171-5179, doi:10. 1038/sj. emboj. 7601390 (2006).
-
(2006)
EMBO J
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.J.2
Bahler, J.3
Nurse, P.4
-
16
-
-
3142544855
-
Control of replication origin density and firing time in Xenopus egg extracts: Role of a caffeinesensitive, ATR-dependent checkpoint
-
Marheineke, K. & Hyrien, O. Control of replication origin density and firing time in Xenopus egg extracts: role of a caffeinesensitive, ATR-dependent checkpoint. J Biol Chem 279, 28071-28081, doi:10. 1074/jbc. M401574200 (2004).
-
(2004)
J Biol Chem
, vol.279
, pp. 28071-28081
-
-
Marheineke, K.1
Hyrien, O.2
-
17
-
-
34547814092
-
Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells
-
Conti, C. et al. Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells. Mol Biol Cell 18, 3059-3067, doi:10. 1091/mbc. E06-08-0689 (2007).
-
(2007)
Mol Biol Cell
, vol.18
, pp. 3059-3067
-
-
Conti, C.1
-
18
-
-
0042743766
-
Dynamics of DNA replication in mammalian somatic cells: Nucleotide pool modulates origin choice and interorigin spacing
-
Anglana, M., Apiou, F., Bensimon, A. & Debatisse, M. Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing. Cell 114, 385-394 (2003).
-
(2003)
Cell
, vol.114
, pp. 385-394
-
-
Anglana, M.1
Apiou, F.2
Bensimon, A.3
Debatisse, M.4
-
19
-
-
79251591628
-
PH-and salt-dependent molecular combing of DNA: Experiments and phenomenological model
-
Benke, A., Mertig, M. & Pompe, W. pH-and salt-dependent molecular combing of DNA: experiments and phenomenological model. Nanotechnology 22, 035304, doi:10. 1088/0957-4484/22/3/035304 (2011).
-
(2011)
Nanotechnology
, vol.22
, pp. 035304
-
-
Benke, A.1
Mertig, M.2
Pompe, W.3
-
20
-
-
0030881494
-
PH-dependent specific binding and combing of DNA
-
Allemand, J. F., Bensimon, D., Jullien, L., Bensimon, A. & Croquette, V. pH-dependent specific binding and combing of DNA. Biophys J 73, 2064-2070, doi:10. 1016/S0006-3495(97)78236-5 (1997).
-
(1997)
Biophys J
, vol.73
, pp. 2064-2070
-
-
Allemand, J.F.1
Bensimon, D.2
Jullien, L.3
Bensimon, A.4
Croquette, V.5
-
21
-
-
84865547058
-
Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing
-
Bianco, J. N. et al. Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing. Methods 57, 149-157, doi:10. 1016/j. ymeth. 2012. 04. 007 (2012).
-
(2012)
Methods
, vol.57
, pp. 149-157
-
-
Bianco, J.N.1
-
22
-
-
0023651031
-
An electrophoretic karyotype for Schizosaccharomyces pombe by pulsed field gel electrophoresis
-
Smith, C. L. et al. An electrophoretic karyotype for Schizosaccharomyces pombe by pulsed field gel electrophoresis. Nucleic Acids Res 15, 4481-4489 (1987).
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 4481-4489
-
-
Smith, C.L.1
-
23
-
-
0000734376
-
Stretching DNA with a receding meniscus: Experiments and models
-
Bensimon, D., Simon, A. J., Croquette, V. V. & Bensimon, A. Stretching DNA with a receding meniscus: Experiments and models. Phys Rev Lett 74, 4754-4757 (1995).
-
(1995)
Phys Rev Lett
, vol.74
, pp. 4754-4757
-
-
Bensimon, D.1
Simon, A.J.2
Croquette, V.V.3
Bensimon, A.4
-
24
-
-
0033548611
-
How strong is a covalent bond
-
Grandbois, M., Beyer, M., Rief, M., Clausen-Schaumann, H. & Gaub, H. E. How strong is a covalent bond? Science 283, 1727-1730 (1999).
-
(1999)
Science
, vol.283
, pp. 1727-1730
-
-
Grandbois, M.1
Beyer, M.2
Rief, M.3
Clausen-Schaumann, H.4
Gaub, H.E.5
-
25
-
-
0032919143
-
Sequence-dependent mechanics of single DNA molecules
-
Rief, M., Clausen-Schaumann, H. & Gaub, H. E. Sequence-dependent mechanics of single DNA molecules. Nat Struct Biol 6, 346-349, doi:10. 1038/7582 (1999).
-
(1999)
Nat Struct Biol
, vol.6
, pp. 346-349
-
-
Rief, M.1
Clausen-Schaumann, H.2
Gaub, H.E.3
-
26
-
-
0034069676
-
Mechanical stability of single DNA molecules
-
Clausen-Schaumann, H., Rief, M., Tolksdorf, C. & Gaub, H. E. Mechanical stability of single DNA molecules. Biophys J 78, 1997-2007, doi:10. 1016/S0006-3495(00)76747-6 (2000).
-
(2000)
Biophys J
, vol.78
, pp. 1997-2007
-
-
Clausen-Schaumann, H.1
Rief, M.2
Tolksdorf, C.3
Gaub, H.E.4
-
27
-
-
0035144565
-
Effect of pH on the overstretching transition of double-stranded DNA: Evidence of force-induced DNA melting
-
Williams, M. C., Wenner, J. R., Rouzina, I. & Bloomfield, V. A. Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting. Biophys J 80, 874-881, doi:10. 1016/S0006-3495(01)76066-3 (2001).
-
(2001)
Biophys J
, vol.80
, pp. 874-881
-
-
Williams, M.C.1
Wenner, J.R.2
Rouzina, I.3
Bloomfield, V.A.4
-
28
-
-
18344401166
-
Behavior of DNA fibers stretched by precise meniscus motion control
-
Otobe, K. & Ohtani, T. Behavior of DNA fibers stretched by precise meniscus motion control. Nucleic Acids Res 29, E109 (2001).
-
(2001)
Nucleic Acids Res
, vol.29
, pp. E109
-
-
Otobe, K.1
Ohtani, T.2
-
29
-
-
4644351928
-
Ionic effect on combing of single DNA molecules and observation of their force-induced melting by fluorescence microscopy
-
Liu, Y. Y. et al. Ionic effect on combing of single DNA molecules and observation of their force-induced melting by fluorescence microscopy. J Chem Phys 121, 4302-4309, doi:10. 1063/1. 1777220 (2004).
-
(2004)
J Chem Phys
, vol.121
, pp. 4302-4309
-
-
Liu, Y.Y.1
-
30
-
-
84923920881
-
The spatial and temporal organization of origin firing during the S-phase of fission yeast
-
Kaykov, A. & Nurse, P. The spatial and temporal organization of origin firing during the S-phase of fission yeast. Genome Res 25, 391-401, doi:10. 1101/gr. 180372. 114 (2015).
-
(2015)
Genome Res
, vol.25
, pp. 391-401
-
-
Kaykov, A.1
Nurse, P.2
-
31
-
-
84859927986
-
Genome-wide identification and characterization of replication origins by deep sequencing
-
Xu, J. et al. Genome-wide identification and characterization of replication origins by deep sequencing. Genome Biol 13, R27, doi:10. 1186/gb-2012-13-4-r27 (2012).
-
(2012)
Genome Biol
, vol.13
, pp. R27
-
-
Xu, J.1
-
32
-
-
84855272663
-
Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
-
Guilbaud, G. et al. Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome. PLoS Comput Biol 7, e1002322, doi:10. 1371/journal. pcbi. 1002322 (2011).
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002322
-
-
Guilbaud, G.1
-
33
-
-
0035825156
-
Replication origins in Xenopus egg extract Are 5-15 kilobases apart and are activated in clusters that fire at different times
-
Blow, J. J., Gillespie, P. J., Francis, D. & Jackson, D. A. Replication origins in Xenopus egg extract Are 5-15 kilobases apart and are activated in clusters that fire at different times. J Cell Biol 152, 15-25 (2001).
-
(2001)
J Cell Biol
, vol.152
, pp. 15-25
-
-
Blow, J.J.1
Gillespie, P.J.2
Francis, D.3
Jackson, D.A.4
-
34
-
-
80052523848
-
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
-
Cayrou, C. et al. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res 21, 1438-1449, doi:10. 1101/gr. 121830. 111 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1438-1449
-
-
Cayrou, C.1
-
35
-
-
84887193918
-
General and specific replication profiles are detected in normal human cells by genome-wide and single-locus molecular combing
-
Palumbo, E., Tosoni, E. & Russo, A. General and specific replication profiles are detected in normal human cells by genome-wide and single-locus molecular combing. Exp Cell Res 319, 3081-3093, doi:10. 1016/j. yexcr. 2013. 10. 001 (2013).
-
(2013)
Exp Cell Res
, vol.319
, pp. 3081-3093
-
-
Palumbo, E.1
Tosoni, E.2
Russo, A.3
-
36
-
-
78650724206
-
Chk1 inhibits replication factory activation but allows dormant origin firing in existing factories
-
Ge, X. Q. & Blow, J. J. Chk1 inhibits replication factory activation but allows dormant origin firing in existing factories. J Cell Biol 191, 1285-1297, doi:10. 1083/jcb. 201007074 (2010).
-
(2010)
J Cell Biol
, vol.191
, pp. 1285-1297
-
-
Ge, X.Q.1
Blow, J.J.2
-
37
-
-
77957982422
-
Chk1 promotes replication fork progression by controlling replication initiation
-
Petermann, E., Woodcock, M. & Helleday, T. Chk1 promotes replication fork progression by controlling replication initiation. Proc Natl Acad Sci USA 107, 16090-16095, doi:10. 1073/pnas. 1005031107 (2010).
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 16090-16095
-
-
Petermann, E.1
Woodcock, M.2
Helleday, T.3
-
38
-
-
84887404285
-
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating earlyand late-firing origins
-
Mesner, L. D. et al. Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating earlyand late-firing origins. Genome Res 23, 1774-1788, doi:10. 1101/gr. 155218. 113 (2013).
-
(2013)
Genome Res
, vol.23
, pp. 1774-1788
-
-
Mesner, L.D.1
-
39
-
-
84887408141
-
Replication dynamics: Biases and robustness of DNA fiber analysis
-
Techer, H. et al. Replication dynamics: biases and robustness of DNA fiber analysis. J Mol Biol 425, 4845-4855, doi:10. 1016/j. jmb. 2013. 03. 040 (2013).
-
(2013)
J Mol Biol
, vol.425
, pp. 4845-4855
-
-
Techer, H.1
-
40
-
-
84900971917
-
Methyl-combing: Single-molecule analysis of DNA methylation on stretched DNA fibers
-
Nemeth, A. Methyl-combing: single-molecule analysis of DNA methylation on stretched DNA fibers. Methods Mol Biol 1094, 233-241, doi:10. 1007/978-1-62703-706-8-18 (2014).
-
(2014)
Methods Mol Biol
, vol.1094
, pp. 233-241
-
-
Nemeth, A.1
-
41
-
-
0026025891
-
Molecular genetic analysis of fission yeast Schizosaccharomyces pombe
-
Moreno, S., Klar, A. & Nurse, P. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194, 795-823 (1991).
-
(1991)
Methods Enzymol
, vol.194
, pp. 795-823
-
-
Moreno, S.1
Klar, A.2
Nurse, P.3
-
42
-
-
0024967091
-
Construction of a Not i restriction map of the fission yeast Schizosaccharomyces pombe genome
-
Fan, J. B. et al. Construction of a Not I restriction map of the fission yeast Schizosaccharomyces pombe genome. Nucleic Acids Res 17, 2801-2818 (1989).
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 2801-2818
-
-
Fan, J.B.1
|