-
1
-
-
84901925216
-
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum
-
Almeida P, Gonçalves C, Teixeira S, Libkind D, Bontrager M, Masneuf-Pomarède I, Albertin W, Durrens P, Sherman DJ, Marullo P, Hittinger CT, Gonçalves P, Sampaio JP (2014) A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nat Commun. 2(5):4044. doi:10.1038/ncomms5044
-
(2014)
Nat Commun.
, vol.2
, Issue.5
, pp. 4044
-
-
Almeida, P.1
Gonçalves, C.2
Teixeira, S.3
Libkind, D.4
Bontrager, M.5
Masneuf-Pomarède, I.6
Albertin, W.7
Durrens, P.8
Sherman, D.J.9
Marullo, P.10
Hittinger, C.T.11
Gonçalves, P.12
Sampaio, J.P.13
-
2
-
-
59149093200
-
Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana
-
COI: 1:CAS:528:DC%2BD1MXhtVOgu70%3D, PID: 1917952
-
Bikard D, Patel D, Le Mette C, Giorgi V, Camilleri C, Bennett MJ, Loudet O (2009) Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science 323:623–626. doi:10.1126/science.1165917
-
(2009)
Science
, vol.323
, pp. 623-626
-
-
Bikard, D.1
Patel, D.2
Le Mette, C.3
Giorgi, V.4
Camilleri, C.5
Bennett, M.J.6
Loudet, O.7
-
3
-
-
84873722165
-
Finding the sources of missing heritability in a yeast cross
-
COI: 1:CAS:528:DC%2BC3sXis1aisb4%3D, PID: 2337695
-
Bloom JS, Ehrenreich IM, Loo WT, Lite TL, Kruglyak L (2013) Finding the sources of missing heritability in a yeast cross. Nature 494:234–237. doi:10.1038/nature11867
-
(2013)
Nature
, vol.494
, pp. 234-237
-
-
Bloom, J.S.1
Ehrenreich, I.M.2
Loo, W.T.3
Lite, T.L.4
Kruglyak, L.5
-
4
-
-
84955452392
-
-
Kruglyak L: The role of genetic interactions in yeast quantitative traits. Biorxi
-
Bloom JS, Kotenko I, Sadhu M, Treusch S, Albert FW, Kruglyak L (2015) The role of genetic interactions in yeast quantitative traits. Biorxiv. doi:10.1101/019513
-
(2015)
Albert FW
-
-
Bloom, J.S.1
Kotenko, I.2
Sadhu, M.3
Treusch, S.4
-
5
-
-
77953603154
-
Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities
-
Bomblies K, Weigel D (2010) Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities. Philos Trans R Soc Lond B 365:1815–1823. doi:10.1098/rstb.2009.0304
-
(2010)
Philos Trans R Soc Lond B
, vol.365
, pp. 1815-1823
-
-
Bomblies, K.1
Weigel, D.2
-
6
-
-
84920268654
-
Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis
-
COI: 1:CAS:528:DC%2BC2cXitFOrt7nJ, PID: 2546744
-
Chae E, Bomblies K, Kim ST, Karelina D, Zaidem M, Ossowski S, Martin-Pizarro C, Laitinen RA, Rowan BA, Tenenboim H, Lechner S, Demar M, Habring-Muller A, Lanz C, Ratsch G, Weigel D (2014) Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis. Cell 159:1341–1351. doi:10.1016/j.cell.2014.10.049
-
(2014)
Cell
, vol.159
, pp. 1341-1351
-
-
Chae, E.1
Bomblies, K.2
Kim, S.T.3
Karelina, D.4
Zaidem, M.5
Ossowski, S.6
Martin-Pizarro, C.7
Laitinen, R.A.8
Rowan, B.A.9
Tenenboim, H.10
Lechner, S.11
Demar, M.12
Habring-Muller, A.13
Lanz, C.14
Ratsch, G.15
Weigel, D.16
-
7
-
-
84906718090
-
Chromosomal variation segregates within incipient species and correlates with reproductive isolation
-
PID: 2503997
-
Charron G, Leducq JB, Landry CR (2014) Chromosomal variation segregates within incipient species and correlates with reproductive isolation. Mol Ecol 23:4362–4372. doi:10.1111/mec.12864
-
(2014)
Mol Ecol
, vol.23
, pp. 4362-4372
-
-
Charron, G.1
Leducq, J.B.2
Landry, C.R.3
-
8
-
-
77955041686
-
Multiple molecular mechanisms cause reproductive isolation between three yeast species
-
PID: 2065201
-
Chou JY, Hung YS, Lin KH, Lee HY, Leu JY (2010) Multiple molecular mechanisms cause reproductive isolation between three yeast species. PLoS Biol 8:e1000432. doi:10.1371/journal.pbio.1000432
-
(2010)
PLoS Biol
, vol.8
, pp. e1000432
-
-
Chou, J.Y.1
Hung, Y.S.2
Lin, K.H.3
Lee, H.Y.4
Leu, J.Y.5
-
9
-
-
84945289705
-
Ecological and genetic barriers differentiate natural populations of Saccharomyces cerevisiae
-
PID: 2595328
-
Clowers KJ, Heilberger J, Piotrowski JS, Will JL, Gasch AP (2015) Ecological and genetic barriers differentiate natural populations of Saccharomyces cerevisiae. Mol Biol Evol. doi:10.1093/molbev/msv112
-
(2015)
Mol Biol Evol
-
-
Clowers, K.J.1
Heilberger, J.2
Piotrowski, J.S.3
Will, J.L.4
Gasch, A.P.5
-
10
-
-
75649111192
-
The genetic landscape of a cell
-
COI: 1:CAS:528:DC%2BC3cXnt1ahug%3D%3D, PID: 2009346
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pal C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C (2010) The genetic landscape of a cell. Science 327:425–431. doi:10.1126/science.1180823
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.8
Toufighi, K.9
Mostafavi, S.10
Prinz, J.11
St Onge, R.P.12
VanderSluis, B.13
Makhnevych, T.14
Vizeacoumar, F.J.15
Alizadeh, S.16
Bahr, S.17
Brost, R.L.18
Chen, Y.19
Cokol, M.20
Deshpande, R.21
Li, Z.22
Lin, Z.Y.23
Liang, W.24
Marback, M.25
Paw, J.26
San Luis, B.J.27
Shuteriqi, E.28
Tong, A.H.29
van Dyk, N.30
Wallace, I.M.31
Whitney, J.A.32
Weirauch, M.T.33
Zhong, G.34
Zhu, H.35
Houry, W.A.36
Brudno, M.37
Ragibizadeh, S.38
Papp, B.39
Pal, C.40
Roth, F.P.41
Giaever, G.42
Nislow, C.43
Troyanskaya, O.G.44
Bussey, H.45
Bader, G.D.46
Gingras, A.C.47
Morris, Q.D.48
Kim, P.M.49
Kaiser, C.A.50
Myers, C.L.51
Andrews, B.J.52
Boone, C.53
more..
-
11
-
-
84947550590
-
-
Speciation Sinauer Associates, Sunderlan
-
Coyne JA, Orr HA (2004) Speciation Sinauer Associates, Sunderland
-
(2004)
Orr HA
-
-
Coyne, J.A.1
-
12
-
-
0037422132
-
Engineering evolution to study speciation in yeasts
-
COI: 1:CAS:528:DC%2BD3sXhs1yit74%3D, PID: 1262143
-
Delneri D, Colson I, Grammenoudi S, Roberts IN, Louis EJ, Oliver SG (2003) Engineering evolution to study speciation in yeasts. Nature 422:68–72. doi:10.1038/nature01418
-
(2003)
Nature
, vol.422
, pp. 68-72
-
-
Delneri, D.1
Colson, I.2
Grammenoudi, S.3
Roberts, I.N.4
Louis, E.J.5
Oliver, S.G.6
-
13
-
-
84905823992
-
Population genomics of the fission yeast Schizosaccharomyces pombe
-
PID: 2511139
-
Fawcett JA, Iida T, Takuno S, Sugino RP, Kado T, Kugou K, Mura S, Kobayashi T, Ohta K, Nakayama J, Innan H (2014) Population genomics of the fission yeast Schizosaccharomyces pombe. PLoS ONE 9:e104241. doi:10.1371/journal.pone.0104241
-
(2014)
PLoS ONE
, vol.9
, pp. e104241
-
-
Fawcett, J.A.1
Iida, T.2
Takuno, S.3
Sugino, R.P.4
Kado, T.5
Kugou, K.6
Mura, S.7
Kobayashi, T.8
Ohta, K.9
Nakayama, J.10
Innan, H.11
-
14
-
-
0034713383
-
Chromosomal evolution in Saccharomyces
-
COI: 1:CAS:528:DC%2BD3cXjslylt7s%3D, PID: 1083953
-
Fischer G, James SA, Roberts IN, Oliver SG, Louis EJ (2000) Chromosomal evolution in Saccharomyces. Nature 405:451–454. doi:10.1038/35013058
-
(2000)
Nature
, vol.405
, pp. 451-454
-
-
Fischer, G.1
James, S.A.2
Roberts, I.N.3
Oliver, S.G.4
Louis, E.J.5
-
15
-
-
84964695807
-
The evolution of drug resistance in clinical isolates of Candida albicans
-
PID: 2564656
-
Ford CB, Funt JM, Abbey D, Issi L, Guiducci C, Martinez DA, Delorey T, Li BY, White TC, Cuomo C, Rao RP, Berman J, Thompson DA, Regev A (2015) The evolution of drug resistance in clinical isolates of Candida albicans. Elife 4:e00662. doi:10.7554/eLife.00662
-
(2015)
Elife
, vol.4
, pp. e00662
-
-
Ford, C.B.1
Funt, J.M.2
Abbey, D.3
Issi, L.4
Guiducci, C.5
Martinez, D.A.6
Delorey, T.7
Li, B.Y.8
White, T.C.9
Cuomo, C.10
Rao, R.P.11
Berman, J.12
Thompson, D.A.13
Regev, A.14
-
16
-
-
84922373440
-
Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast
-
COI: 1:CAS:528:DC%2BC2MXivFGlsbk%3D, PID: 2534928
-
Friedrich A, Jung P, Reisser C, Fischer G, Schacherer J (2015) Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast. Mol Biol Evol 32:184–192. doi:10.1093/molbev/msu295
-
(2015)
Mol Biol Evol
, vol.32
, pp. 184-192
-
-
Friedrich, A.1
Jung, P.2
Reisser, C.3
Fischer, G.4
Schacherer, J.5
-
17
-
-
33644770200
-
Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair
-
COI: 1:CAS:528:DC%2BD28XksF2ktL8%3D, PID: 1649277
-
Heck JA, Argueso JL, Gemici Z, Reeves RG, Bernard A, Aquadro CF, Alani E (2006) Negative epistasis between natural variants of the SaccharomycescerevisiaeMLH1 and PMS1 genes results in a defect in mismatch repair. Proc Natl Acad Sci USA 103:3256–3261. doi:10.1073/Pnas.0510998103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 3256-3261
-
-
Heck, J.A.1
Argueso, J.L.2
Gemici, Z.3
Reeves, R.G.4
Bernard, A.5
Aquadro, C.F.6
Alani, E.7
-
18
-
-
84923925533
-
Genetic and phenotypic intra-species variation in Candida albicans
-
Hirakawa MP, Martinez DA, Sakthikumar S, Anderson MZ, Berlin A, Gujja S, Zeng Q, Zisson E, Wang JM, Greenberg JM, Berman J, Bennett RJ, Cuomo CA (2014) Genetic and phenotypic intra-species variation in Candida albicans. Genome Res 225:413–425. doi:10.1101/gr.174623.114
-
(2014)
Genome Res
, vol.225
, pp. 413-425
-
-
Hirakawa, M.P.1
Martinez, D.A.2
Sakthikumar, S.3
Anderson, M.Z.4
Berlin, A.5
Gujja, S.6
Zeng, Q.7
Zisson, E.8
Wang, J.M.9
Greenberg, J.M.10
Berman, J.11
Bennett, R.J.12
Cuomo, C.A.13
-
19
-
-
84944515047
-
Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling
-
PID: 2595750
-
Ho Y, Gasch AP (2015) Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling. Curr Genet. doi:10.1007/s00294-015-0491-0
-
(2015)
Curr Genet
-
-
Ho, Y.1
Gasch, A.P.2
-
20
-
-
84901239093
-
Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BC2cXnslGntL0%3D, PID: 2481414
-
Hou J, Friedrich A, de Montigny J, Schacherer J (2014) Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomycescerevisiae. Curr Biol 24:1153–1159. doi:10.1016/j.cub.2014.03.063
-
(2014)
Curr Biol
, vol.24
, pp. 1153-1159
-
-
Hou, J.1
Friedrich, A.2
de Montigny, J.3
Schacherer, J.4
-
21
-
-
84930227166
-
Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast
-
PID: 2600813
-
Hou J, Friedrich A, Gounot JS, Schacherer J (2015) Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast. Nat Commun 6:7214. doi:10.1038/ncomms8214
-
(2015)
Nat Commun
, vol.6
, pp. 7214
-
-
Hou, J.1
Friedrich, A.2
Gounot, J.S.3
Schacherer, J.4
-
22
-
-
84924074129
-
The genomic and phenotypic diversity of Schizosaccharomyces pombe
-
COI: 1:CAS:528:DC%2BC2MXhvFCntbg%3D, PID: 2566500
-
Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O’Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J (2015) The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat Genet 47:235–241. doi:10.1038/ng.3215
-
(2015)
Nat Genet
, vol.47
, pp. 235-241
-
-
Jeffares, D.C.1
Rallis, C.2
Rieux, A.3
Speed, D.4
Převorovský, M.5
Mourier, T.6
Marsellach, F.X.7
Iqbal, Z.8
Lau, W.9
Cheng, T.M.10
Pracana, R.11
Mülleder, M.12
Lawson, J.L.13
Chessel, A.14
Bala, S.15
Hellenthal, G.16
O’Fallon, B.17
Keane, T.18
Simpson, J.T.19
Bischof, L.20
Tomiczek, B.21
Bitton, D.A.22
Sideri, T.23
Codlin, S.24
Hellberg, J.E.25
van Trigt, L.26
Jeffery, L.27
Li, J.J.28
Atkinson, S.29
Thodberg, M.30
Febrer, M.31
McLay, K.32
Drou, N.33
Brown, W.34
Hayles, J.35
Carazo Salas, R.E.36
Ralser, M.37
Maniatis, N.38
Balding, D.J.39
Balloux, F.40
Durbin, R.41
Bähler, J.42
more..
-
23
-
-
79961167522
-
The rise of yeast population genomics
-
COI: 1:CAS:528:DC%2BC3MXpvFCgs7k%3D, PID: 2181994
-
Liti G, Schacherer J (2011) The rise of yeast population genomics. C R Biol 334:612–619. doi:10.1016/j.crvi.2011.05.009
-
(2011)
C R Biol
, vol.334
, pp. 612-619
-
-
Liti, G.1
Schacherer, J.2
-
24
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
COI: 1:CAS:528:DC%2BD1MXhvFKisrc%3D, PID: 1921232
-
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O’Kelly MJ, van Oudenaarden A, Barton DB, Bailes E, Nguyen AN, Jones M, Quail MA, Goodhead I, Sims S, Smith F, Blomberg A, Durbin R, Louis EJ (2009) Population genomics of domestic and wild yeasts. Nature 458:337–341. doi:10.1038/nature07743
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
James, S.A.6
Davey, R.P.7
Roberts, I.N.8
Burt, A.9
Koufopanou, V.10
Tsai, I.J.11
Bergman, C.M.12
Bensasson, D.13
O’Kelly, M.J.14
van Oudenaarden, A.15
Barton, D.B.16
Bailes, E.17
Nguyen, A.N.18
Jones, M.19
Quail, M.A.20
Goodhead, I.21
Sims, S.22
Smith, F.23
Blomberg, A.24
Durbin, R.25
Louis, E.J.26
more..
-
25
-
-
84908632089
-
Mitochondrial-nuclear epistasis contributes to phenotypic variation and coadaptation in natural isolates of Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BC2MXhtlehu7s%3D, PID: 2516488
-
Paliwal S, Fiumera AC, Fiumera HL (2014) Mitochondrial-nuclear epistasis contributes to phenotypic variation and coadaptation in natural isolates of Saccharomycescerevisiae. Genetics 198:1251–1265. doi:10.1534/genetics.114.168575
-
(2014)
Genetics
, vol.198
, pp. 1251-1265
-
-
Paliwal, S.1
Fiumera, A.C.2
Fiumera, H.L.3
-
26
-
-
0036796474
-
Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains
-
COI: 1:CAS:528:DC%2BD38XotVKgtLc%3D, PID: 1236824
-
Perez-Ortin JE, Querol A, Puig S, Barrio E (2002) Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 12:1533–1539. doi:10.1101/gr.436602
-
(2002)
Genome Res
, vol.12
, pp. 1533-1539
-
-
Perez-Ortin, J.E.1
Querol, A.2
Puig, S.3
Barrio, E.4
-
27
-
-
84939882562
-
Purifying selection against gene conversions between the polyamine transport (TPO) genes of Saccharomyces species
-
Sampathkumar G, Drouin G (2015) Purifying selection against gene conversions between the polyamine transport (TPO) genes of Saccharomyces species. Curr Genet 2015(61):67–72. doi:10.1007/s00294-014-0445-y
-
(2015)
Curr Genet
, vol.2015
, Issue.61
, pp. 67-72
-
-
Sampathkumar, G.1
Drouin, G.2
-
28
-
-
62649126517
-
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BD1MXhvFKjtrk%3D, PID: 1921232
-
Schacherer J, Shapiro JA, Ruderfer DM, Kruglyak L (2009) Comprehensive polymorphism survey elucidates population structure of Saccharomycescerevisiae. Nature 458:342–345. doi:10.1038/nature07670
-
(2009)
Nature
, vol.458
, pp. 342-345
-
-
Schacherer, J.1
Shapiro, J.A.2
Ruderfer, D.M.3
Kruglyak, L.4
-
29
-
-
38849199286
-
Widespread genetic incompatibility in C. elegans maintained by balancing selection
-
COI: 1:CAS:528:DC%2BD1cXht1Knt7Y%3D, PID: 1818762
-
Seidel HS, Rockman MV, Kruglyak L (2008) Widespread genetic incompatibility in C. elegans maintained by balancing selection. Science 319:589–594. doi:10.1126/science.1151107
-
(2008)
Science
, vol.319
, pp. 589-594
-
-
Seidel, H.S.1
Rockman, M.V.2
Kruglyak, L.3
-
30
-
-
84883698933
-
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
-
COI: 1:CAS:528:DC%2BC3sXhsVOls7bF, PID: 2372045
-
Skelly DA, Merrihew GE, Riffle M, Connelly CF, Kerr EO, Johansson M, Jaschob D, Graczyk B, Shulman NJ, Wakefield J, Cooper SJ, Fields S, Noble WS, Muller EG, Davis TN, Dunham MJ, Maccoss MJ, Akey JM (2013) Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast. Genome Res 23:1496–1504. doi:10.1101/gr.155762.113
-
(2013)
Genome Res
, vol.23
, pp. 1496-1504
-
-
Skelly, D.A.1
Merrihew, G.E.2
Riffle, M.3
Connelly, C.F.4
Kerr, E.O.5
Johansson, M.6
Jaschob, D.7
Graczyk, B.8
Shulman, N.J.9
Wakefield, J.10
Cooper, S.J.11
Fields, S.12
Noble, W.S.13
Muller, E.G.14
Davis, T.N.15
Dunham, M.J.16
Maccoss, M.J.17
Akey, J.M.18
-
31
-
-
84929658508
-
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
-
COI: 1:CAS:528:DC%2BC2MXptlGqs74%3D, PID: 2584085
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Strope PK, Skelly DA, Kozmin SG, Mahadevan G, Stone EA, Magwene PM, Dietrich FS, McCusker JH (2015) The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen. Genome Res 25:762–774. doi:10.1101/gr.185538.114
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(2015)
Genome Res
, vol.25
, pp. 762-774
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Strope, P.K.1
Skelly, D.A.2
Kozmin, S.G.3
Mahadevan, G.4
Stone, E.A.5
Magwene, P.M.6
Dietrich, F.S.7
McCusker, J.H.8
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