-
1
-
-
33846951759
-
Biomass recalcitrance: Engineering plants and enzymes for biofuels production
-
Himmel, M. E. et al. Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 315, 804-807 (2007).
-
(2007)
Science
, vol.315
, pp. 804-807
-
-
Himmel, M.E.1
-
2
-
-
84923915273
-
Enzymatic degradation of (ligno)cellulose
-
Bornscheuer, U., Buchholz, K. & Seibel, J. Enzymatic degradation of (ligno)cellulose. Angew. Chem. Int. Ed. 53, 10876-10893 (2014).
-
(2014)
Angew. Chem. Int. Ed.
, vol.53
, pp. 10876-10893
-
-
Bornscheuer, U.1
Buchholz, K.2
Seibel, J.3
-
3
-
-
80053088478
-
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components
-
Quinlan, R. J. et al. Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Proc. Natl Acad. Sci. USA 108, 15079-15084 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 15079-15084
-
-
Quinlan, R.J.1
-
4
-
-
77957727454
-
An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides
-
Vaaje-Kolstad, G. et al. An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides. Science 330, 219-222 (2010).
-
(2010)
Science
, vol.330
, pp. 219-222
-
-
Vaaje-Kolstad, G.1
-
5
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
Lombard, V., Golaconda Ramulu, H., Drula, E., Coutinho, P. M. & Henrissat, B. The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 42, D490-D495 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D490-D495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
6
-
-
84897113991
-
Discovery of a new family of lytic polysaccharide mono-oxygenases
-
Hemsworth, G. R., Henrissat, B., Davies, G. J. & Walton, P. H. Discovery of a new family of lytic polysaccharide mono-oxygenases. Nat. Chem. Biol. 10, 122-126 (2014).
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 122-126
-
-
Hemsworth, G.R.1
Henrissat, B.2
Davies, G.J.3
Walton, P.H.4
-
7
-
-
84875193804
-
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
-
Levasseur, A., Drula, E., Lombard, V., Coutinho, P. M. & Henrissat, B. Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Biotechnol. Biofuels 6, 41 (2013).
-
(2013)
Biotechnol. Biofuels
, vol.6
, pp. 41
-
-
Levasseur, A.1
Drula, E.2
Lombard, V.3
Coutinho, P.M.4
Henrissat, B.5
-
8
-
-
84855912007
-
Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases
-
Beeson, W. T., Phillips, C. M., Cate, J. H. & Marletta, M. A. Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases. J. Am. Chem. Soc. 134, 890-892 (2012).
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 890-892
-
-
Beeson, W.T.1
Phillips, C.M.2
Cate, J.H.3
Marletta, M.A.4
-
9
-
-
77950948151
-
Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: Structure and function of a large, enigmatic family
-
Harris, P. V. et al. Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Biochemistry 49, 3305-3316 (2010).
-
(2010)
Biochemistry
, vol.49
, pp. 3305-3316
-
-
Harris, P.V.1
-
10
-
-
84885472701
-
Recent insights into coppercontaining lytic polysaccharide mono-oxygenases
-
Hemsworth, G. R., Davies, G. J. & Walton, P. H. Recent insights into coppercontaining lytic polysaccharide mono-oxygenases. Curr. Opin. Struct. Biol. 23, 660-668 (2013).
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 660-668
-
-
Hemsworth, G.R.1
Davies, G.J.2
Walton, P.H.3
-
11
-
-
84902578753
-
Spectroscopic and computational insight into the activation of O2 by the mononuclear Cu center in polysaccharide monooxygenases
-
Kjaergaard, C. H. et al. Spectroscopic and computational insight into the activation of O2 by the mononuclear Cu center in polysaccharide monooxygenases. Proc. Natl Acad. Sci. USA 111, 8797-8802 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 8797-8802
-
-
Kjaergaard, C.H.1
-
12
-
-
84897970495
-
Copper active sites in biology
-
Solomon, E. I. et al. Copper active sites in biology. Chem. Rev. 114, 3659-3853 (2014).
-
(2014)
Chem. Rev.
, vol.114
, pp. 3659-3853
-
-
Solomon, E.I.1
-
13
-
-
84892745213
-
Determinants of regioselective hydroxylation in the fungal polysaccharide monooxygenases
-
Vu, V. V., Beeson, W. T., Phillips, C. M., Cate, J. H. D. & Marletta, M. A. Determinants of regioselective hydroxylation in the fungal polysaccharide monooxygenases. J. Am. Chem. Soc. 136, 562-565 (2013).
-
(2013)
J. Am. Chem. Soc.
, vol.136
, pp. 562-565
-
-
Vu, V.V.1
Beeson, W.T.2
Phillips, C.M.3
Cate, J.H.D.4
Marletta, M.A.5
-
14
-
-
84893460463
-
A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides
-
Isaksen, T. et al. A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides. J. Biol. Chem. 289, 2632-2642 (2014).
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 2632-2642
-
-
Isaksen, T.1
-
15
-
-
84876724822
-
The copper active site of CBM33 polysaccharide oxygenases
-
Hemsworth, G. R. et al. The copper active site of CBM33 polysaccharide oxygenases. J. Am. Chem. Soc. 135, 6069-6077 (2013).
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 6069-6077
-
-
Hemsworth, G.R.1
-
16
-
-
84891926133
-
Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism
-
Kim, S., Ståhlberg, J., Sandgren, M., Paton, R. S. & Beckham, G. T. Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism. Proc. Natl Acad. Sci. USA 111, 149-154 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 149-154
-
-
Kim, S.1
Ståhlberg, J.2
Sandgren, M.3
Paton, R.S.4
Beckham, G.T.5
-
17
-
-
77952093872
-
Oxidation of methane by a biological dicopper centre
-
Balasubramanian, R. et al. Oxidation of methane by a biological dicopper centre. Nature 465, 115-119 (2010).
-
(2010)
Nature
, vol.465
, pp. 115-119
-
-
Balasubramanian, R.1
-
18
-
-
84976228345
-
1H, 13C, 15N resonance assignment of the chitin-active lytic polysaccharide monooxygenase BlLPMO10A from Bacillus licheniformis
-
Courtade, G. et al. 1H, 13C, 15N resonance assignment of the chitin-active lytic polysaccharide monooxygenase BlLPMO10A from Bacillus licheniformis. Biomol. NMR Assign. 1-4 (2014).
-
(2014)
Biomol. NMR Assign
, pp. 1-4
-
-
Courtade, G.1
-
19
-
-
84869205445
-
NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions
-
Aachmann, F. L., Sørlie, M., Skjåk-Bræk, G., Eijsink, V. G. H. & Vaaje-Kolstad, G. NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions. Proc. Natl Acad. Sci. USA 109, 18779-18784 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 18779-18784
-
-
Aachmann, F.L.1
Sørlie, M.2
Skjåk-Bræk, G.3
Eijsink, V.G.H.4
Vaaje-Kolstad, G.5
-
21
-
-
84918563784
-
Fungal cellulose degradation by oxidative enzymes: From dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family
-
Morgenstern, I., Powlowski, J. & Tsang, A. Fungal cellulose degradation by oxidative enzymes: from dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family. Brief. Funct. Genomics 13, 471-481 (2014).
-
(2014)
Brief. Funct. Genomics
, vol.13
, pp. 471-481
-
-
Morgenstern, I.1
Powlowski, J.2
Tsang, A.3
-
22
-
-
84902205104
-
Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases
-
Forsberg, Z. et al. Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases. Proc. Natl Acad. Sci. USA 111, 8446-8451 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 8446-8451
-
-
Forsberg, Z.1
-
23
-
-
84899647519
-
Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation
-
Agger, J. W. et al. Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation. Proc. Natl Acad. Sci. USA 111, 6287-6292 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 6287-6292
-
-
Agger, J.W.1
-
24
-
-
84897855544
-
New enzyme insights drive advances in commercial ethanol production
-
Harris, P. V., Xu, F., Kreel, N. E., Kang, C. & Fukuyama, S. New enzyme insights drive advances in commercial ethanol production. Curr. Opin. Chem. Biol. 19, 162-170 (2014).
-
(2014)
Curr. Opin. Chem. Biol.
, vol.19
, pp. 162-170
-
-
Harris, P.V.1
Xu, F.2
Kreel, N.E.3
Kang, C.4
Fukuyama, S.5
-
25
-
-
84902738221
-
Ensiling and hydrothermal pretreatment of grass: Consequences for enzymatic biomass conversion and total monosaccharide yields
-
Ambye-Jensen, M., Johansen, K., Didion, T., Kadar, Z. & Meyer, A. Ensiling and hydrothermal pretreatment of grass: consequences for enzymatic biomass conversion and total monosaccharide yields. Biotechnol. Biofuels 7, 95 (2014).
-
(2014)
Biotechnol. Biofuels
, vol.7
, pp. 95
-
-
Ambye-Jensen, M.1
Johansen, K.2
Didion, T.3
Kadar, Z.4
Meyer, A.5
-
26
-
-
33747050268
-
Resistant starch-a review
-
Sajilata, M. G., Singhal, R. S. & Kulkarni, P. R. Resistant starch-a review. Comp. Rev. Food Sci. Food Safety 5, 1-17 (2006).
-
(2006)
Comp. Rev. Food Sci. Food Safety
, vol.5
, pp. 1-17
-
-
Sajilata, M.G.1
Singhal, R.S.2
Kulkarni, P.R.3
-
28
-
-
84863092120
-
Novel enzymes for the degradation of cellulose
-
Horn, S. J., Vaaje-Kolstad, G., Westereng, B. & Eijsink, V. G. Novel enzymes for the degradation of cellulose. Biotechnol. Biofuels 5, 45 (2012).
-
(2012)
Biotechnol. Biofuels
, vol.5
, pp. 45
-
-
Horn, S.J.1
Vaaje-Kolstad, G.2
Westereng, B.3
Eijsink, V.G.4
-
30
-
-
84907289294
-
A family of starch-active polysaccharide monooxygenases
-
Vu, V. V., Beeson, W. T., Span, E. A., Farquhar, E. R. & Marletta, M. A. A family of starch-active polysaccharide monooxygenases. Proc. Natl Acad. Sci. USA 111, 13822-13827 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 13822-13827
-
-
Vu, V.V.1
Beeson, W.T.2
Span, E.A.3
Farquhar, E.R.4
Marletta, M.A.5
-
31
-
-
84885472019
-
Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydratebinding modules
-
Gilbert, H. J., Knox, J. P. & Boraston, A. B. Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydratebinding modules. Curr. Opin. Struct. Biol. 23, 669-677 (2013).
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 669-677
-
-
Gilbert, H.J.1
Knox, J.P.2
Boraston, A.B.3
-
32
-
-
84905994561
-
Discovery of a eukaryotic pyrroloquinoline quinonedependent oxidoreductase belonging to a new auxiliary activity family in the database of carbohydrate-active enzymes
-
Matsumura, H. et al. Discovery of a eukaryotic pyrroloquinoline quinonedependent oxidoreductase belonging to a new auxiliary activity family in the database of carbohydrate-active enzymes. PLoS ONE 9, e104851 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e104851
-
-
Matsumura, H.1
-
33
-
-
69449083006
-
The carbohydrate-binding module family 20-diversity, structure, and function
-
Christiansen, C. et al. The carbohydrate-binding module family 20-diversity, structure, and function. FEBS J. 276, 5006-5029 (2009).
-
(2009)
FEBS J.
, vol.276
, pp. 5006-5029
-
-
Christiansen, C.1
-
34
-
-
84861987031
-
Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases
-
Li, X., Beeson, 4th W. T., Phillips, C. M., Marletta, M. A. & Cate, J. H. Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases. Structure 20, 1051-1061 (2012).
-
(2012)
Structure
, vol.20
, pp. 1051-1061
-
-
Li, X.1
Beeson, W.T.2
Phillips, C.M.3
Marletta, M.A.4
Cate, J.H.5
-
35
-
-
84903852138
-
Structural and electronic snapshots during the transition from a Cu (II) to Cu (I) metal center of a lytic polysaccharide monooxygenase by X-ray photo-reduction
-
Gudmundsson, M. et al. Structural and electronic snapshots during the transition from a Cu (II) to Cu (I) metal center of a lytic polysaccharide monooxygenase by X-ray photo-reduction. J. Biol. Chem. 289, 18782-18792 (2014).
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 18782-18792
-
-
Gudmundsson, M.1
-
36
-
-
77956377452
-
The molecular structures of starch components and their contribution to the architecture of starch granules: A comprehensive review
-
Pérez, S. & Bertoft, E. The molecular structures of starch components and their contribution to the architecture of starch granules: A comprehensive review. Starch Stärke 62, 389-420 (2010).
-
(2010)
Starch Stärke
, vol.62
, pp. 389-420
-
-
Pérez, S.1
Bertoft, E.2
-
37
-
-
0016369980
-
Structural implications derived from the analysis of electron paramagnetic resonance spectra of natural and artificial copper proteins
-
Peisach, J. & Blumberg, W. E. Structural implications derived from the analysis of electron paramagnetic resonance spectra of natural and artificial copper proteins. Arch. Biochem. Biophys. 165, 691-708 (1974).
-
(1974)
Arch. Biochem. Biophys.
, vol.165
, pp. 691-708
-
-
Peisach, J.1
Blumberg, W.E.2
-
38
-
-
84898944979
-
Comparative study of two chitin-active and two celluloseactive AA10-type lytic polysaccharide monooxygenases
-
Forsberg, Z. et al. Comparative study of two chitin-active and two celluloseactive AA10-type lytic polysaccharide monooxygenases. Biochemistry 53, 1647-1656 (2014).
-
(2014)
Biochemistry
, vol.53
, pp. 1647-1656
-
-
Forsberg, Z.1
-
39
-
-
7444225775
-
Novel buffer systems for macromolecular crystallization
-
Newman, J. Novel buffer systems for macromolecular crystallization. Acta Crystallogr. D Biol. Crystallogr. 60, 610-612 (2004).
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 610-612
-
-
Newman, J.1
-
40
-
-
33947537616
-
An automated microseed matrixscreening method for protein crystallization
-
D'Arcy, A., Frederic, V. A. & Marsh, M. An automated microseed matrixscreening method for protein crystallization. Acta Crystallogr. D Biol. Crystallogr. 63, 550-554 (2007).
-
(2007)
Acta Crystallogr. D Biol. Crystallogr.
, vol.63
, pp. 550-554
-
-
D'Arcy, A.1
Frederic, V.A.2
Marsh, M.3
-
42
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
44
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D Biol. Crystallogr. 67, 235-242 (2011).
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
-
46
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna, R. et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31, 3497-3500 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
-
47
-
-
0035012982
-
STRAP: Editor for structural alignments of proteins
-
Gille, C. & Frommel, C. STRAP: editor for STRuctural Alignments of Proteins. Bioinformatics 17, 377-378 (2001).
-
(2001)
Bioinformatics
, vol.17
, pp. 377-378
-
-
Gille, C.1
Frommel, C.2
-
48
-
-
34447326804
-
A simple and rapid method for the permethylation of carbohydrates
-
Ciucanu, I. & Kerek, F. A simple and rapid method for the permethylation of carbohydrates. Carbohydr. Res. 131, 209-217 (1984).
-
(1984)
Carbohydr. Res.
, vol.131
, pp. 209-217
-
-
Ciucanu, I.1
Kerek, F.2
-
49
-
-
78649329362
-
Carbohydrate structural analysis of wheat flour arabinogalactan protein
-
Tryfona, T. et al. Carbohydrate structural analysis of wheat flour arabinogalactan protein. Carbohydr. Res. 345, 2648-2656 (2010).
-
(2010)
Carbohydr. Res.
, vol.345
, pp. 2648-2656
-
-
Tryfona, T.1
-
50
-
-
84867129575
-
Structural characterization of Arabidopsis leaf arabinogalactan polysaccharides
-
Tryfona, T. et al. Structural characterization of Arabidopsis leaf arabinogalactan polysaccharides. Plant Physiol. 160, 653-666 (2012).
-
(2012)
Plant Physiol.
, vol.160
, pp. 653-666
-
-
Tryfona, T.1
-
51
-
-
79957736765
-
The plant cell wall
-
ed Popper, Z. A Ch. Humana Press 5
-
Goubet, F., Dupree, P. & Johansen, K. in The Plant Cell Wall. Methods in Molecular Biology, Vol. 715 (ed Popper, Z. A.) Ch. 5, 81-92 (Humana Press, 2011).
-
(2011)
Methods in Molecular Biology
, vol.715
, pp. 81-92
-
-
Goubet, F.1
Dupree, P.2
Johansen, K.3
-
52
-
-
0036145787
-
Polysaccharide analysis using carbohydrate gel electrophoresis: A method to study plant cell wall polysaccharides and polysaccharide hydrolases
-
Goubet, F., Jackson, P., Deery, M. J. & Dupree, P. Polysaccharide analysis using carbohydrate gel electrophoresis: A method to study plant cell wall polysaccharides and polysaccharide hydrolases. Anal. Biochem. 300, 53-68 (2002).
-
(2002)
Anal. Biochem.
, vol.300
, pp. 53-68
-
-
Goubet, F.1
Jackson, P.2
Deery, M.J.3
Dupree, P.4
|