-
1
-
-
33746631748
-
Visual cycle: dependence of retinol production and removal on photoproduct decay and cell morphology
-
Ala-Laurila, P., A. V. Kolesnikov, R. K. Crouch, E. Tsina, S. A. Shukolyukov, V. I. Govardovskii, Y. Koutalos, B. Wiggert, M. E. Estevez, and M. C. Cornwall . 2006. Visual cycle: dependence of retinol production and removal on photoproduct decay and cell morphology. J. Gen. Physiol. 128:153-169.
-
(2006)
J. Gen. Physiol.
, vol.128
, pp. 153-169
-
-
Ala-Laurila, P.1
Kolesnikov, A.V.2
Crouch, R.K.3
Tsina, E.4
Shukolyukov, S.A.5
Govardovskii, V.I.6
Koutalos, Y.7
Wiggert, B.8
Estevez, M.E.9
Cornwall, M.C.10
-
2
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova, M., and O. Gascuel . 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst. Biol. 55:539-552.
-
(2006)
Syst. Biol.
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
3
-
-
84946614867
-
Nocturnality in synapsids predates the origin of mammals by over 100 million years
-
Angielczyk, K. D., and L. Schmitz . 2014. Nocturnality in synapsids predates the origin of mammals by over 100 million years. Proc. R. Soc. B. 281:20141642.
-
(2014)
Proc. R. Soc. B.
, vol.281
, pp. 20141642
-
-
Angielczyk, K.D.1
Schmitz, L.2
-
4
-
-
77950923723
-
Nomenclature and placental mammal phylogeny
-
Asher, R. J., and K. M. Helgen . 2010. Nomenclature and placental mammal phylogeny. BMC Evol. Biol. 10:102.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 102
-
-
Asher, R.J.1
Helgen, K.M.2
-
5
-
-
0017724234
-
Regeneration of rhodopsin in frog rod outer segments
-
Azuma, K., M. Azuma, and W. Sickel . 1977. Regeneration of rhodopsin in frog rod outer segments. J. Physiol. 271:747-759.
-
(1977)
J. Physiol.
, vol.271
, pp. 747-759
-
-
Azuma, K.1
Azuma, M.2
Sickel, W.3
-
6
-
-
84948438701
-
Assessing the prediction fidelity of ancestral reconstruction by a library approach
-
Protein Eng. Des. Sel. Advance online publication.
-
Bar-Rogovsky, H., A. Stern, O. Penn, I. Kobl, T. Pupko, and D. S. Tawfik . 2015. Assessing the prediction fidelity of ancestral reconstruction by a library approach. Protein Eng. Des. Sel. Advance online publication. Available at http://peds.oxfordjournals.org/content/early/2015/08/13/protein.gzv038.long
-
(2015)
-
-
Bar-Rogovsky, H.1
Stern, A.2
Penn, O.3
Kobl, I.4
Pupko, T.5
Tawfik, D.S.6
-
7
-
-
0015716256
-
Kinetics of rhodopsin bleaching in the isolated human retina
-
Baumann, C. H., and S. Bender . 1973. Kinetics of rhodopsin bleaching in the isolated human retina. J. Physiol. 235:761-773.
-
(1973)
J. Physiol.
, vol.235
, pp. 761-773
-
-
Baumann, C.H.1
Bender, S.2
-
8
-
-
84870049412
-
Functional characterization of the rod visual pigment of the echidna (Tachyglossus aculeatus), a basal mammal
-
Bickelmann, C., J. M. Morrow, J. Müller, and B. S. W. Chang . 2012. Functional characterization of the rod visual pigment of the echidna (Tachyglossus aculeatus), a basal mammal. Vis. Neurosci. 29:211-217.
-
(2012)
Vis. Neurosci.
, vol.29
, pp. 211-217
-
-
Bickelmann, C.1
Morrow, J.M.2
Müller, J.3
Chang, B.S.W.4
-
9
-
-
34047108602
-
The delayed rise of present-day mammals
-
Bininda-Emonds, O., M. Cardillo, K. E. Jones, R. D. E. MacPhee, R. M. D. Beck, R. Grenyer, S. A. Price, R. A. Vos, J. L. Gittleman, and A. Purvis . 2007. The delayed rise of present-day mammals. Nature 466:507-512.
-
(2007)
Nature
, vol.466
, pp. 507-512
-
-
Bininda-Emonds, O.1
Cardillo, M.2
Jones, K.E.3
MacPhee, R.D.E.4
Beck, R.M.D.5
Grenyer, R.6
Price, S.A.7
Vos, R.A.8
Gittleman, J.L.9
Purvis, A.10
-
10
-
-
0345827474
-
The need for speed
-
Blumer, K. J. 2004. The need for speed. Nature 427:20-21.
-
(2004)
Nature
, vol.427
, pp. 20-21
-
-
Blumer, K.J.1
-
11
-
-
0034917522
-
Activation, deactivation, and adaptation in vertebrate photoreceptor cells
-
Burns, M. E., and D. A. Baylor .2001. Activation, deactivation, and adaptation in vertebrate photoreceptor cells. Ann. Rev. Neurosci. 24:779-805.
-
(2001)
Ann. Rev. Neurosci.
, vol.24
, pp. 779-805
-
-
Burns, M.E.1
Baylor, D.A.2
-
12
-
-
0033860303
-
Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences
-
Chang, B. S. W., and D. L. Campbell . 2000. Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences. Mol. Biol. Evol. 17:1220-1231.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1220-1231
-
-
Chang, B.S.W.1
Campbell, D.L.2
-
13
-
-
84938512853
-
The future of codon models in studies of molecular function: ancestral reconstruction and clade models of functional divergence
-
in G. M., Cannarozzi, and A. Schneider, eds. Oxford Univ. Press, Oxford.
-
Chang, B. S. W., J. Du, C. Weadick, J. Müller, C. Bickelmann, D. Yu, and J. M. Morrow . 2012. The future of codon models in studies of molecular function: ancestral reconstruction and clade models of functional divergence. Pp. 145-163 in G. M., Cannarozzi, and A. Schneider, eds. Codon models in evolution. Oxford Univ. Press, Oxford.
-
(2012)
Codon models in evolution
, pp. 145-163
-
-
Chang, B.S.W.1
Du, J.2
Weadick, C.3
Müller, J.4
Bickelmann, C.5
Yu, D.6
Morrow, J.M.7
-
14
-
-
79953234218
-
Crystal structure of metarhodopsin II
-
Choe, H. W., Y. J. Kim, J. H. Park, T. Morizumi, E. F. Pai, N. Krauss, K. P. Hofmann, P. Scheerer, and O. P. Ernst . 2011. Crystal structure of metarhodopsin II. Nature 471:651-655.
-
(2011)
Nature
, vol.471
, pp. 651-655
-
-
Choe, H.W.1
Kim, Y.J.2
Park, J.H.3
Morizumi, T.4
Pai, E.F.5
Krauss, N.6
Hofmann, K.P.7
Scheerer, P.8
Ernst, O.P.9
-
15
-
-
78049511701
-
Temperature, metabolic power and the evolution of endothermy
-
Clarke, A., and H. O. Pörtner . 2010. Temperature, metabolic power and the evolution of endothermy. Biol. Rev. Camb. Philos. Soc. 85:703-727.
-
(2010)
Biol. Rev. Camb. Philos. Soc.
, vol.85
, pp. 703-727
-
-
Clarke, A.1
Pörtner, H.O.2
-
16
-
-
0023183389
-
Factors affecting the regeneration of rhodopsin in the isolated amphibian retina
-
Cocozza, J. D., and S. E. Ostroy . 1987. Factors affecting the regeneration of rhodopsin in the isolated amphibian retina. Vis. Res. 27:1085-1091.
-
(1987)
Vis. Res.
, vol.27
, pp. 1085-1091
-
-
Cocozza, J.D.1
Ostroy, S.E.2
-
17
-
-
0017813834
-
Evolution of homeothermy in mammals
-
Crompton, A. W., C. R. Taylor, and J. A. Jagger . 1978. Evolution of homeothermy in mammals. Nature 272:333-336.
-
(1978)
Nature
, vol.272
, pp. 333-336
-
-
Crompton, A.W.1
Taylor, C.R.2
Jagger, J.A.3
-
18
-
-
84862773263
-
Molecular ecology and adaptation of visual photopigments in craniates
-
Davies, W. I., S. P. Collin, and D. M. Hunt . 2012. Molecular ecology and adaptation of visual photopigments in craniates. Mol. Ecol. 21:3121-3158.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 3121-3158
-
-
Davies, W.I.1
Collin, S.P.2
Hunt, D.M.3
-
19
-
-
47549097539
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
-
Drummond, D. A., and C. O. Wilke . 2008. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 134:341-352.
-
(2008)
Cell
, vol.134
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
21
-
-
0028957661
-
Structure and function in rhodopsin. Measurement of the rate of metarhodopsin II decay by fluorescence spectroscopy
-
Farrens, D. L., and G. Khorana . 1995. Structure and function in rhodopsin. Measurement of the rate of metarhodopsin II decay by fluorescence spectroscopy. J. Biol. Chem. 270:5073-5076.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 5073-5076
-
-
Farrens, D.L.1
Khorana, G.2
-
22
-
-
0141828152
-
Inferring the paleoenvironment of ancient bacteria on the basis of resurrected proteins
-
Gaucher, E. A., J. M. Thomson, M. F. Burgan, and S. A. Benner . 2003. Inferring the paleoenvironment of ancient bacteria on the basis of resurrected proteins. Nature 425:285-288.
-
(2003)
Nature
, vol.425
, pp. 285-288
-
-
Gaucher, E.A.1
Thomson, J.M.2
Burgan, M.F.3
Benner, S.A.4
-
23
-
-
0033809503
-
In search of the visual pigment template
-
Govardovskii, V. I., N. Fyhrquist, T. Reuter, D. G. Kuzmin, and K. Donner . 2000. In search of the visual pigment template. Vis. Neurosci. 17:509-528.
-
(2000)
Vis. Neurosci.
, vol.17
, pp. 509-528
-
-
Govardovskii, V.I.1
Fyhrquist, N.2
Reuter, T.3
Kuzmin, D.G.4
Donner, K.5
-
24
-
-
0030964078
-
Identification of protein kinase C phosphorylation sites on bovine rhodopsin
-
Greene, N. M., D. S. Williams, and A. C. Newton 1997. Identification of protein kinase C phosphorylation sites on bovine rhodopsin. J. Biol. Chem. 272:10341-10344.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 10341-10344
-
-
Greene, N.M.1
Williams, D.S.2
Newton, A.C.3
-
25
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon, S., J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel . 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59:307-321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
26
-
-
84869100883
-
Eye shape and the nocturnal bottleneck of mammals
-
Hall, M. I., J. M. Kamilar, and E. C. Kirk . 2012. Eye shape and the nocturnal bottleneck of mammals. Proc. R. Soc. B. 279:4962-4968.
-
(2012)
Proc. R. Soc. B.
, vol.279
, pp. 4962-4968
-
-
Hall, M.I.1
Kamilar, J.M.2
Kirk, E.C.3
-
27
-
-
0001335746
-
The influence of light adaptation on the subsequent dark adaptation of the eye
-
Hecht, S., C. Haig, and A. M. Chase . 1937. The influence of light adaptation on the subsequent dark adaptation of the eye. J. Gen. Physiol. 20:831-850.
-
(1937)
J. Gen. Physiol.
, vol.20
, pp. 831-850
-
-
Hecht, S.1
Haig, C.2
Chase, A.M.3
-
28
-
-
0026736042
-
The role of arrestin and retinoids in the regeneration pathway of rhodopsin
-
Hofmann, K. P., A. Pulvermüller, J. Buczytko, P. Van Hooser, and K. Palczewski . 1992. The role of arrestin and retinoids in the regeneration pathway of rhodopsin. J. Biol. Chem. 267:15701-15706.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 15701-15706
-
-
Hofmann, K.P.1
Pulvermüller, A.2
Buczytko, J.3
Van Hooser, P.4
Palczewski, K.5
-
29
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura, T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2:13-34.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
30
-
-
28244436381
-
More on why birds and mammals have big brains
-
Jerison, H. J. 1971. More on why birds and mammals have big brains. Am. Nat. 105:185-189.
-
(1971)
Am. Nat.
, vol.105
, pp. 185-189
-
-
Jerison, H.J.1
-
32
-
-
0141910377
-
-
eds. Columbia Univ. Press, New York.
-
Kielan-Jaworowska, Z., R. L. Cifelli, and Z.-X. Luo, eds. 2004. Mammals from the age of dinosaurs: origins, evolution, and structure. Columbia Univ. Press, New York.
-
(2004)
Mammals from the age of dinosaurs: origins, evolution, and structure
-
-
Kielan-Jaworowska, Z.1
Cifelli, R.L.2
Luo, Z.-X.3
-
33
-
-
0037168497
-
Conserved proline residue at position 189 in cone visual pigments as a determinant of molecular properties different from rhodopsins
-
Kuwayama, S., H. Imai, T. Hirano, A. Terakita, and Y. Shichida . 2002. Conserved proline residue at position 189 in cone visual pigments as a determinant of molecular properties different from rhodopsins. Biochemistry 41:15245-15252.
-
(2002)
Biochemistry
, vol.41
, pp. 15245-15252
-
-
Kuwayama, S.1
Imai, H.2
Hirano, T.3
Terakita, A.4
Shichida, Y.5
-
34
-
-
33846596863
-
Phototransduction, dark adaption, and rhodopsin regeneration
-
Lamb, T., and E. Pugh . 2006. Phototransduction, dark adaption, and rhodopsin regeneration. Invest. Ophthal. Vis. Sci. 47:5138-5153.
-
(2006)
Invest. Ophthal. Vis. Sci.
, vol.47
, pp. 5138-5153
-
-
Lamb, T.1
Pugh, E.2
-
35
-
-
77949627424
-
Relationships among visual cycle retinoids, rhodopsin phosphorylation, and phototransduction in mouse eyes during light and dark adaptation
-
Lee, K. A., M. Nawrot, G. G. Garwin, J. C. Saari, and J. B. Hurley . 2010. Relationships among visual cycle retinoids, rhodopsin phosphorylation, and phototransduction in mouse eyes during light and dark adaptation. Biochemistry 49:2454-2463.
-
(2010)
Biochemistry
, vol.49
, pp. 2454-2463
-
-
Lee, K.A.1
Nawrot, M.2
Garwin, G.G.3
Saari, J.C.4
Hurley, J.B.5
-
36
-
-
0029756165
-
Specific tryptophan UV-absorbance changes are probes of the transition of rhodopsin to its active state
-
Lin, S. W., and T. P. Sakmar . 1996. Specific tryptophan UV-absorbance changes are probes of the transition of rhodopsin to its active state. Biochemistry 35:11149-11159.
-
(1996)
Biochemistry
, vol.35
, pp. 11149-11159
-
-
Lin, S.W.1
Sakmar, T.P.2
-
37
-
-
37249073003
-
Transformation and diversification in early mammal evolution
-
Luo, Z.-X. 2007. Transformation and diversification in early mammal evolution. Nature 450:1011-1019.
-
(2007)
Nature
, vol.450
, pp. 1011-1019
-
-
Luo, Z.-X.1
-
38
-
-
15944402444
-
A late Jurassic digging mammal and early mammalian diversification
-
Luo, Z.-X., and J. R. Wible . 2005. A late Jurassic digging mammal and early mammalian diversification. Science 308:103-107.
-
(2005)
Science
, vol.308
, pp. 103-107
-
-
Luo, Z.-X.1
Wible, J.R.2
-
39
-
-
84923076533
-
Evolutionary development in basal mammaliaforms as revealed by a docodontan
-
Luo, Z.-X., Q.-J. Meng, Q. Ji, D. Liu, Y.-G. Zhang, and A. I. Neander . 2015. Evolutionary development in basal mammaliaforms as revealed by a docodontan. Science 13:760-764.
-
(2015)
Science
, vol.13
, pp. 760-764
-
-
Luo, Z.-X.1
Meng, Q.-J.2
Ji, Q.3
Liu, D.4
Zhang, Y.-G.5
Neander, A.I.6
-
40
-
-
0842279823
-
Recovery of the human photopic electroretinogram after bleaching exposures: estimation of pigment regeneration kinetics
-
Mahroo, O. A., and T. D. Lamb . 2004. Recovery of the human photopic electroretinogram after bleaching exposures: estimation of pigment regeneration kinetics. J. Physiol. 554:417-437.
-
(2004)
J. Physiol.
, vol.554
, pp. 417-437
-
-
Mahroo, O.A.1
Lamb, T.D.2
-
41
-
-
33845874885
-
A mesozoic gliding mammal from northeastern China
-
Meng, J., Y. Hu, Y. Wang, X. Wang, and C. Li . 2006. A mesozoic gliding mammal from northeastern China. Nature 444:889-893.
-
(2006)
Nature
, vol.444
, pp. 889-893
-
-
Meng, J.1
Hu, Y.2
Wang, Y.3
Wang, X.4
Li, C.5
-
42
-
-
84923096533
-
An arboreal docodont from the Jurassic and mammaliaform ecological diversification
-
Meng, Q.-J., Q. Ji, Y.-G. Zhang, D. Liu, D. M. Grossnickle, and Z.-X. Luo . 2015. An arboreal docodont from the Jurassic and mammaliaform ecological diversification. Science 13:764-768.
-
(2015)
Science
, vol.13
, pp. 764-768
-
-
Meng, Q.-J.1
Ji, Q.2
Zhang, Y.-G.3
Liu, D.4
Grossnickle, D.M.5
Luo, Z.-X.6
-
43
-
-
39249084537
-
A phylogeny and timescale for marsupial evolution based on sequences for five nuclear genes
-
Meredith, R. W., M. Westerman, J. A. Case, and M. S. Springer . 2007. A phylogeny and timescale for marsupial evolution based on sequences for five nuclear genes. J. Mamm. Evol. 15:1-36.
-
(2007)
J. Mamm. Evol.
, vol.15
, pp. 1-36
-
-
Meredith, R.W.1
Westerman, M.2
Case, J.A.3
Springer, M.S.4
-
44
-
-
0020713543
-
Monoclonal antibodies to rhodopsin: characterization, cross-reactivity, and application as structural probes
-
Molday, R. S., and D. MacKenzie . 1983. Monoclonal antibodies to rhodopsin: characterization, cross-reactivity, and application as structural probes. Biochemistry 22:653-660.
-
(1983)
Biochemistry
, vol.22
, pp. 653-660
-
-
Molday, R.S.1
MacKenzie, D.2
-
45
-
-
77956886452
-
The p1D4-hrGFP II expression vector: a tool for expressing and purifying visual pigments and other G protein-coupled receptors
-
Morrow, J. M., and B. S. W. Chang . 2010. The p1D4-hrGFP II expression vector: a tool for expressing and purifying visual pigments and other G protein-coupled receptors. Plasmid 64:162-169.
-
(2010)
Plasmid
, vol.64
, pp. 162-169
-
-
Morrow, J.M.1
Chang, B.S.W.2
-
46
-
-
84928357610
-
Comparative mutagenesis studies of retinal release in light-activated zebrafish rhodopsin using fluorescence spectroscopy
-
--. 2015. Comparative mutagenesis studies of retinal release in light-activated zebrafish rhodopsin using fluorescence spectroscopy. Biochemistry 54:4507-4518.
-
(2015)
Biochemistry
, vol.54
, pp. 4507-4518
-
-
-
47
-
-
34147184456
-
Using genomic data to unravel the root of the placental mammal phylogeny
-
Murphy, W. J., T. H. Pringle, T. A. Crider, M. S. Springer, and W. Miller . 2007. Using genomic data to unravel the root of the placental mammal phylogeny. Genome Res. 17:413-421.
-
(2007)
Genome Res
, vol.17
, pp. 413-421
-
-
Murphy, W.J.1
Pringle, T.H.2
Crider, T.A.3
Springer, M.S.4
Miller, W.5
-
48
-
-
0029066872
-
Rhodopsin phosphorylation and dephosphorylation in vivo
-
Ohguro, H., J. P. Van Hooser, A. H. Milam, and K. Palczewski . 1995. Rhodopsin phosphorylation and dephosphorylation in vivo. J. Biol. Chem. 270:14259-14262.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 14259-14262
-
-
Ohguro, H.1
Van Hooser, J.P.2
Milam, A.H.3
Palczewski, K.4
-
49
-
-
0023515308
-
Expression of a synthetic bovine rhodopsin gene in monkey kidney cells
-
Oprian, D. D., R. S. Molday, R. J. Kaufman, and H. G. Khorana . 1987. Expression of a synthetic bovine rhodopsin gene in monkey kidney cells. Proc. Natl. Acad. Sci. USA 84:8874-8878.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 8874-8878
-
-
Oprian, D.D.1
Molday, R.S.2
Kaufman, R.J.3
Khorana, H.G.4
-
50
-
-
84859476070
-
Effect of channel mutations on the uptake and release oft he retinal ligand in opsin
-
Piechnick, R., E. Ritter, P. W. Hildebrand, O. P. Ernst, P. Scheerer, K. P. Hofmann, and M. Heck . 2012. Effect of channel mutations on the uptake and release oft he retinal ligand in opsin. Proc. Natl. Acad. Sci. USA 109:5247-5252.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5247-5252
-
-
Piechnick, R.1
Ritter, E.2
Hildebrand, P.W.3
Ernst, O.P.4
Scheerer, P.5
Hofmann, K.P.6
Heck, M.7
-
51
-
-
36348992886
-
Dealing with uncertainty in ancestral sequence reconstruction: sampling from the posterior distribution
-
D. A. Liberles, ed. Oxford University Press; Oxford.
-
Pollock, D. D., and B. S. W. Chang . 2007. Dealing with uncertainty in ancestral sequence reconstruction: sampling from the posterior distribution. In Ancestral Sequence Reconstruction, D. A. Liberles, ed. Oxford University Press; Oxford. 85-94.
-
(2007)
In Ancestral Sequence Reconstruction
, pp. 85-94
-
-
Pollock, D.D.1
Chang, B.S.W.2
-
52
-
-
0040678011
-
Functional differences in the interaction of arrestin and its splice variant, p44, with rhodopsin
-
Pulvermüller, A., D. Maretzki, M. Rudnicka-Nawrot, W. C. Smith, K. Palczewski, and K. P. Hofmann . 1997. Functional differences in the interaction of arrestin and its splice variant, p44, with rhodopsin. Biochemistry 36:9253-9260.
-
(1997)
Biochemistry
, vol.36
, pp. 9253-9260
-
-
Pulvermüller, A.1
Maretzki, D.2
Rudnicka-Nawrot, M.3
Smith, W.C.4
Palczewski, K.5
Hofmann, K.P.6
-
53
-
-
9144265807
-
Transition of rhodopsin into the active metarhodopsin II state opens a new light-induced pathway linked to Schiff base isomerization
-
Ritter, E., K. Zimmermann, M. Heck, K. P. Hofmann, and F. J. Bartl . 2004. Transition of rhodopsin into the active metarhodopsin II state opens a new light-induced pathway linked to Schiff base isomerization. J. Biol. Chem. 279:48102-48111.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 48102-48111
-
-
Ritter, E.1
Zimmermann, K.2
Heck, M.3
Hofmann, K.P.4
Bartl, F.J.5
-
54
-
-
33846921336
-
Evolution of eye size and shape in primates
-
Ross, C. F., and E. C. Kirk . 2007. Evolution of eye size and shape in primates. J. Hum. Evol. 52:294-313.
-
(2007)
J. Hum. Evol.
, vol.52
, pp. 294-313
-
-
Ross, C.F.1
Kirk, E.C.2
-
55
-
-
78049426172
-
Functional analysis of the second extracellular loop of rhodopsin by characterizing split variants
-
Sakai, K., Y. Imamoto, T. Yamashita, and Y. Shichida . 2010. Functional analysis of the second extracellular loop of rhodopsin by characterizing split variants. Photochem. Photobiol. Sci. 9:1490-1497.
-
(2010)
Photochem. Photobiol. Sci.
, vol.9
, pp. 1490-1497
-
-
Sakai, K.1
Imamoto, Y.2
Yamashita, T.3
Shichida, Y.4
-
56
-
-
33646838978
-
A periodic pattern of mRNA secondary structure created by the genetic code
-
Shabalina, S. A., A. Y. Ogutsov, and N. A. Spiridonov . 2006. A periodic pattern of mRNA secondary structure created by the genetic code. Nucl. Acid. Res. 34:2428-2437.
-
(2006)
Nucl. Acid. Res.
, vol.34
, pp. 2428-2437
-
-
Shabalina, S.A.1
Ogutsov, A.Y.2
Spiridonov, N.A.3
-
57
-
-
77249117674
-
Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation
-
Sugawara, T., H. Imai, M. Nikaido, Y. Imamoto, and N. Okada . 2010. Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation. Mol. Biol. Evol. 27:506-519.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 506-519
-
-
Sugawara, T.1
Imai, H.2
Nikaido, M.3
Imamoto, Y.4
Okada, N.5
-
58
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol
-
Tamura, K., J. Dudley, M. Nei, and S. Kumar . 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
59
-
-
1942531303
-
Resurrecting ancient genes: Experimental analysis of extinct molecules
-
Thornton, J. W. 2004. Resurrecting ancient genes: Experimental analysis of extinct molecules. Nat. Rev. Genet. 5:366-375.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 366-375
-
-
Thornton, J.W.1
-
60
-
-
1842786894
-
Rhodopsin photoproducts in 2D crystals
-
Vogel, R., J. Ruprecht, C. Villa, T. Mielke, G. F. Schertler, and F. Siebert . 2004. Rhodopsin photoproducts in 2D crystals. J. Mol. Biol. 338:597-609.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 597-609
-
-
Vogel, R.1
Ruprecht, J.2
Villa, C.3
Mielke, T.4
Schertler, G.F.5
Siebert, F.6
-
61
-
-
79952125246
-
Retinal release from opsin in molecular dynamics simulations
-
Wang, T., and Y. Duan . 2011. Retinal release from opsin in molecular dynamics simulations. J. Mol. Recognit. 24:350-358.
-
(2011)
J. Mol. Recognit.
, vol.24
, pp. 350-358
-
-
Wang, T.1
Duan, Y.2
-
62
-
-
34250836910
-
Cretaceous eutherians and Laurasian origin for placental mammals near the K/T boundary
-
Wible, J. R., G. W. Rougier, M. J. Novacek, and R. J. Asher . 2007. Cretaceous eutherians and Laurasian origin for placental mammals near the K/T boundary. Nature 447:1003-1006.
-
(2007)
Nature
, vol.447
, pp. 1003-1006
-
-
Wible, J.R.1
Rougier, G.W.2
Novacek, M.J.3
Asher, R.J.4
-
63
-
-
0037133528
-
Function of extracellular loop 2 in rhodopsin: glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II
-
Yan, E. C., M. A. Kazmi, S. De, B. S. Chang, C. Seibert, E. P. Marin, R. A. Mathies, and T. P. Sakmar . 2002. Function of extracellular loop 2 in rhodopsin: glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II. Biochemistry 41:3620-3627.
-
(2002)
Biochemistry
, vol.41
, pp. 3620-3627
-
-
Yan, E.C.1
Kazmi, M.A.2
De, S.3
Chang, B.S.4
Seibert, C.5
Marin, E.P.6
Mathies, R.A.7
Sakmar, T.P.8
-
64
-
-
34547803197
-
PAML 4: phylogenetic analysis using maximum likelihood
-
Yang, Z. 2007. PAML 4: phylogenetic analysis using maximum likelihood. Mol. Biol. Evol. 24:1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
65
-
-
0028820333
-
A new method of inference of ancestral nucleotide and amino acid sequences
-
Yang, Z., S. Kumar, and M. Nei . 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650.
-
(1995)
Genetics
, vol.141
, pp. 1641-1650
-
-
Yang, Z.1
Kumar, S.2
Nei, M.3
-
66
-
-
0028118719
-
Phototransduction mechanism in retinal rods and cones
-
Yau, K.-W. 1994. Phototransduction mechanism in retinal rods and cones. Invest. Ophthalmol. Vis. Sci. 35:9-32.
-
(1994)
Invest. Ophthalmol. Vis. Sci.
, vol.35
, pp. 9-32
-
-
Yau, K.-W.1
-
67
-
-
84856721023
-
Rod-like properties of small single cones: transmutated photoreceptors of garter snakes (Thamnophis proximus)
-
Master Thesis, Department of Cell and System Biology, University of Toronto, Toronto.
-
Yang, C. G. Y. 2010. Rod-like properties of small single cones: transmutated photoreceptors of garter snakes (Thamnophis proximus). Master Thesis, Department of Cell and System Biology, University of Toronto, Toronto.
-
(2010)
-
-
Yang, C.G.Y.1
-
68
-
-
16344378246
-
Bayes empirical Bayes inference of amino acid sites under positive selection
-
Yang, Z., W. S. W. Wong, and R. Nielsen . 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22:1107-1118.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
69
-
-
67049100269
-
The evolution of colour vision in nocturnal mammals
-
Zhao, H., S. J. Rossiter, E. C. Teeling, C. Li, J. A. Cotton, and S. Zhang . 2009a. The evolution of colour vision in nocturnal mammals. Proc. Natl. Acad. Sci. USA 106:8980-8985.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 8980-8985
-
-
Zhao, H.1
Rossiter, S.J.2
Teeling, E.C.3
Li, C.4
Cotton, J.A.5
Zhang, S.6
-
70
-
-
77949497133
-
Rhodopsin molecular evolution in mammals inhabiting low light environments
-
Zhao, H., B. Ru, E. C. Teeling, C. G. Faulkes, S. Zhang, and S. J. Rossiter . 2009b. Rhodopsin molecular evolution in mammals inhabiting low light environments. PloS One 4:e8326.
-
(2009)
PloS One
, vol.4
, pp. e8326
-
-
Zhao, H.1
Ru, B.2
Teeling, E.C.3
Faulkes, C.G.4
Zhang, S.5
Rossiter, S.J.6
|