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Volumn 98, Issue 1, 2016, Pages 165-184

Genetic Diversity and Association Studies in US Hispanic/Latino Populations: Applications in the Hispanic Community Health Study/Study of Latinos

(37)  Conomos, Matthew P a   Laurie, Cecelia A a   Stilp, Adrienne M a   Gogarten, Stephanie M a   McHugh, Caitlin P a   Nelson, Sarah C a   Sofer, Tamar a   Fernández Rhodes, Lindsay b   Justice, Anne E b   Graff, Mariaelisa b   Young, Kristin L b   Seyerle, Amanda A b   Avery, Christy L b   Taylor, Kent D c   Rotter, Jerome I c   Talavera, Gregory A d   Daviglus, Martha L e   Wassertheil Smoller, Sylvia f   Schneiderman, Neil g   Heiss, Gerardo b   more..


Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; CENTRAL AMERICAN; CUBAN; DOMINICAN (DOMINICA); FEMALE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC TRAIT; GENETIC VARIABILITY; HISPANIC; HUMAN; MAJOR CLINICAL STUDY; MALE; MEXICAN; POPULATION STRUCTURE; PRIORITY JOURNAL; PUERTO RICAN; SOUTH AMERICAN; UNITED STATES; GENETIC VARIATION; GENETICS; GENOME-WIDE ASSOCIATION STUDY;

EID: 84954289580     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2015.12.001     Document Type: Article
Times cited : (232)

References (79)
  • 1
    • 84906081395 scopus 로고    scopus 로고
    • Status of cardiovascular disease and stroke in Hispanics/Latinos in the United States: A science advisory from the American Heart Association
    • American Heart Association Council on Clinical Cardiology American Heart Association Council on Cardiovascular and Stroke Nursing
    • C.J. Rodriguez, M. Allison, M.L. Daviglus, C.R. Isasi, C. Keller, E.C. Leira, L. Palaniappan, I.L. Piña, S.M. Ramirez, B. Rodriguez, M. Sims American Heart Association Council on Epidemiology and Prevention American Heart Association Council on Clinical Cardiology American Heart Association Council on Cardiovascular and Stroke Nursing Status of cardiovascular disease and stroke in Hispanics/Latinos in the United States: a science advisory from the American Heart Association Circulation 130 2014 593 625
    • (2014) Circulation , vol.130 , pp. 593-625
    • Rodriguez, C.J.1    Allison, M.2    Daviglus, M.L.3    Isasi, C.R.4    Keller, C.5    Leira, E.C.6    Palaniappan, L.7    Piña, I.L.8    Ramirez, S.M.9    Rodriguez, B.10    Sims, M.11
  • 7
    • 0037442092 scopus 로고    scopus 로고
    • Population stratification and spurious allelic association
    • L.R. Cardon, and L.J. Palmer Population stratification and spurious allelic association Lancet 361 2003 598 604
    • (2003) Lancet , vol.361 , pp. 598-604
    • Cardon, L.R.1    Palmer, L.J.2
  • 8
    • 77953811255 scopus 로고    scopus 로고
    • New approaches to population stratification in genome-wide association studies
    • A.L. Price, N.A. Zaitlen, D. Reich, and N. Patterson New approaches to population stratification in genome-wide association studies Nat. Rev. Genet. 11 2010 459 463
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 459-463
    • Price, A.L.1    Zaitlen, N.A.2    Reich, D.3    Patterson, N.4
  • 11
    • 84868305308 scopus 로고    scopus 로고
    • Prevalence of major cardiovascular risk factors and cardiovascular diseases among Hispanic/Latino individuals of diverse backgrounds in the United States
    • M.L. Daviglus, G.A. Talavera, M.L. Avilés-Santa, M. Allison, J. Cai, M.H. Criqui, M. Gellman, A.L. Giachello, N. Gouskova, R.C. Kaplan, and et al. Prevalence of major cardiovascular risk factors and cardiovascular diseases among Hispanic/Latino individuals of diverse backgrounds in the United States JAMA 308 2012 1775 1784
    • (2012) JAMA , vol.308 , pp. 1775-1784
    • Daviglus, M.L.1    Talavera, G.A.2    Avilés-Santa, M.L.3    Allison, M.4    Cai, J.5    Criqui, M.H.6    Gellman, M.7    Giachello, A.L.8    Gouskova, N.9    Kaplan, R.C.10
  • 15
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • A.L. Price, N.J. Patterson, R.M. Plenge, M.E. Weinblatt, N.A. Shadick, and D. Reich Principal components analysis corrects for stratification in genome-wide association studies Nat. Genet. 38 2006 904 909
    • (2006) Nat. Genet. , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 17
    • 0032680362 scopus 로고    scopus 로고
    • A fast algorithm for the minimum covariance determinant estimator
    • P.J. Rousseeuw, and K. Van Driessen A fast algorithm for the minimum covariance determinant estimator Technometrics 41 1999 212 223
    • (1999) Technometrics , vol.41 , pp. 212-223
    • Rousseeuw, P.J.1    Van Driessen, K.2
  • 19
    • 84928029504 scopus 로고    scopus 로고
    • Robust inference of population structure for ancestry prediction and correction of stratification in the presence of relatedness
    • M.P. Conomos, M.B. Miller, and T.A. Thornton Robust inference of population structure for ancestry prediction and correction of stratification in the presence of relatedness Genet. Epidemiol. 39 2015 276 293
    • (2015) Genet. Epidemiol. , vol.39 , pp. 276-293
    • Conomos, M.P.1    Miller, M.B.2    Thornton, T.A.3
  • 26
    • 84969321555 scopus 로고    scopus 로고
    • Genetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium
    • N.D. Palmer, M.O. Goodarzi, C.D. Langefeld, N. Wang, X. Guo, K.D. Taylor, T.E. Fingerlin, J.M. Norris, T.A. Buchanan, A.H. Xiang, and et al. Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium Diabetes 64 2015 1853 1866
    • (2015) Diabetes , vol.64 , pp. 1853-1866
    • Palmer, N.D.1    Goodarzi, M.O.2    Langefeld, C.D.3    Wang, N.4    Guo, X.5    Taylor, K.D.6    Fingerlin, T.E.7    Norris, J.M.8    Buchanan, T.A.9    Xiang, A.H.10
  • 27
    • 84894259001 scopus 로고    scopus 로고
    • Genome-wide study of percent emphysema on computed tomography in the general population. The Multi-Ethnic Study of Atherosclerosis Lung/SNP Health Association Resource Study
    • A. Manichaikul, E.A. Hoffman, J. Smolonska, W. Gao, M.H. Cho, H. Baumhauer, M. Budoff, J.H. Austin, G.R. Washko, J.J. Carr, and et al. Genome-wide study of percent emphysema on computed tomography in the general population. The Multi-Ethnic Study of Atherosclerosis Lung/SNP Health Association Resource Study Am. J. Respir. Crit. Care Med. 189 2014 408 418
    • (2014) Am. J. Respir. Crit. Care Med. , vol.189 , pp. 408-418
    • Manichaikul, A.1    Hoffman, E.A.2    Smolonska, J.3    Gao, W.4    Cho, M.H.5    Baumhauer, H.6    Budoff, M.7    Austin, J.H.8    Washko, G.R.9    Carr, J.J.10
  • 28
    • 84871267657 scopus 로고    scopus 로고
    • Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population
    • A.G. Comuzzie, S.A. Cole, S.L. Laston, V.S. Voruganti, K. Haack, R.A. Gibbs, and N.F. Butte Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population PLoS ONE 7 2012 e51954
    • (2012) PLoS ONE , vol.7 , pp. e51954
    • Comuzzie, A.G.1    Cole, S.A.2    Laston, S.L.3    Voruganti, V.S.4    Haack, K.5    Gibbs, R.A.6    Butte, N.F.7
  • 32
    • 77949278812 scopus 로고    scopus 로고
    • Candidate loci for insulin sensitivity and disposition index from a genome-wide association analysis of Hispanic participants in the Insulin Resistance Atherosclerosis (IRAS) Family Study
    • N.D. Palmer, C.D. Langefeld, J.T. Ziegler, F. Hsu, S.M. Haffner, T. Fingerlin, J.M. Norris, Y.I. Chen, S.S. Rich, T. Haritunians, and et al. Candidate loci for insulin sensitivity and disposition index from a genome-wide association analysis of Hispanic participants in the Insulin Resistance Atherosclerosis (IRAS) Family Study Diabetologia 53 2010 281 289
    • (2010) Diabetologia , vol.53 , pp. 281-289
    • Palmer, N.D.1    Langefeld, C.D.2    Ziegler, J.T.3    Hsu, F.4    Haffner, S.M.5    Fingerlin, T.6    Norris, J.M.7    Chen, Y.I.8    Rich, S.S.9    Haritunians, T.10
  • 37
    • 84863003734 scopus 로고    scopus 로고
    • Genome-wide efficient mixed-model analysis for association studies
    • X. Zhou, and M. Stephens Genome-wide efficient mixed-model analysis for association studies Nat. Genet. 44 2012 821 824
    • (2012) Nat. Genet. , vol.44 , pp. 821-824
    • Zhou, X.1    Stephens, M.2
  • 38
    • 84895801913 scopus 로고    scopus 로고
    • Advantages and pitfalls in the application of mixed-model association methods
    • J. Yang, N.A. Zaitlen, M.E. Goddard, P.M. Visscher, and A.L. Price Advantages and pitfalls in the application of mixed-model association methods Nat. Genet. 46 2014 100 106
    • (2014) Nat. Genet. , vol.46 , pp. 100-106
    • Yang, J.1    Zaitlen, N.A.2    Goddard, M.E.3    Visscher, P.M.4    Price, A.L.5
  • 39
    • 79954585465 scopus 로고    scopus 로고
    • A comparison of association methods correcting for population stratification in case-control studies
    • C. Wu, A. DeWan, J. Hoh, and Z. Wang A comparison of association methods correcting for population stratification in case-control studies Ann. Hum. Genet. 75 2011 418 427
    • (2011) Ann. Hum. Genet. , vol.75 , pp. 418-427
    • Wu, C.1    DeWan, A.2    Hoh, J.3    Wang, Z.4
  • 46
    • 84871952176 scopus 로고    scopus 로고
    • Improved whole-chromosome phasing for disease and population genetic studies
    • O. Delaneau, J.F. Zagury, and J. Marchini Improved whole-chromosome phasing for disease and population genetic studies Nat. Methods 10 2013 5 6
    • (2013) Nat. Methods , vol.10 , pp. 5-6
    • Delaneau, O.1    Zagury, J.F.2    Marchini, J.3
  • 47
    • 84863845193 scopus 로고    scopus 로고
    • Genotype imputation with thousands of genomes
    • B. Howie, J. Marchini, and M. Stephens Genotype imputation with thousands of genomes G3 (Bethesda) 1 2011 457 470
    • (2011) G3 (Bethesda) , vol.1 , pp. 457-470
    • Howie, B.1    Marchini, J.2    Stephens, M.3
  • 48
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • B.N. Howie, P. Donnelly, and J. Marchini A flexible and accurate genotype imputation method for the next generation of genome-wide association studies PLoS Genet. 5 2009 e1000529
    • (2009) PLoS Genet. , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 49
    • 78649508578 scopus 로고    scopus 로고
    • Mach: Using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Y. Li, C.J. Willer, J. Ding, P. Scheet, and G.R. Abecasis MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes Genet. Epidemiol. 34 2010 816 834
    • (2010) Genet. Epidemiol. , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 50
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • D.H. Alexander, J. Novembre, and K. Lange Fast model-based estimation of ancestry in unrelated individuals Genome Res. 19 2009 1655 1664
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 51
    • 15944414175 scopus 로고    scopus 로고
    • The Human Genome Diversity Project: Past, present and future
    • L.L. Cavalli-Sforza The Human Genome Diversity Project: past, present and future Nat. Rev. Genet. 6 2005 333 340
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 333-340
    • Cavalli-Sforza, L.L.1
  • 54
    • 84855259178 scopus 로고    scopus 로고
    • Modelling of complex survey data: Why model? Why is it a problem? How can we approach it?
    • D. Pfeffermann Modelling of complex survey data: Why model? Why is it a problem? How can we approach it? Surv. Methodol. 37 2011 115 136
    • (2011) Surv. Methodol. , vol.37 , pp. 115-136
    • Pfeffermann, D.1
  • 55
    • 0029564551 scopus 로고
    • Average Information REML: An efficient algorithm for variance parameter estimation in linear mixed models
    • A.R. Gilmour, R. Thompson, and B.R. Cullis Average Information REML: An efficient algorithm for variance parameter estimation in linear mixed models Biometrics 51 1995 1440 1450
    • (1995) Biometrics , vol.51 , pp. 1440-1450
    • Gilmour, A.R.1    Thompson, R.2    Cullis, B.R.3
  • 56
    • 84870820953 scopus 로고    scopus 로고
    • A high-performance computing toolset for relatedness and principal component analysis of SNP data
    • X. Zheng, D. Levine, J. Shen, S.M. Gogarten, C. Laurie, and B.S. Weir A high-performance computing toolset for relatedness and principal component analysis of SNP data Bioinformatics 28 2012 3326 3328
    • (2012) Bioinformatics , vol.28 , pp. 3326-3328
    • Zheng, X.1    Levine, D.2    Shen, J.3    Gogarten, S.M.4    Laurie, C.5    Weir, B.S.6
  • 60
    • 84883239661 scopus 로고    scopus 로고
    • Ggmap: Spatial visualization with ggplot2
    • D. Kahle, and K. Wickham ggmap: spatial visualization with ggplot2 R J. 5 2013 144 161 http://journal.r-project.org/archive/2013-2011/kahle-wickham.pdf
    • (2013) R J. , vol.5 , pp. 144-161
    • Kahle, D.1    Wickham, K.2
  • 65
    • 84920797739 scopus 로고    scopus 로고
    • The genetic ancestry of African Americans, Latinos, and European Americans across the United States
    • K. Bryc, E.Y. Durand, J.M. Macpherson, D. Reich, and J.L. Mountain The genetic ancestry of African Americans, Latinos, and European Americans across the United States Am. J. Hum. Genet. 96 2015 37 53
    • (2015) Am. J. Hum. Genet. , vol.96 , pp. 37-53
    • Bryc, K.1    Durand, E.Y.2    Macpherson, J.M.3    Reich, D.4    Mountain, J.L.5
  • 66
    • 84950434348 scopus 로고
    • Hyperdimensional data analysis using parallel coordinates
    • E. Wegman Hyperdimensional data analysis using parallel coordinates J. Am. Stat. Assoc. 85 1990 664 675
    • (1990) J. Am. Stat. Assoc. , vol.85 , pp. 664-675
    • Wegman, E.1
  • 67
    • 84927126442 scopus 로고    scopus 로고
    • Relatedness in the post-genomic era: Is it still useful?
    • D. Speed, and D.J. Balding Relatedness in the post-genomic era: is it still useful? Nat. Rev. Genet. 16 2015 33 44
    • (2015) Nat. Rev. Genet. , vol.16 , pp. 33-44
    • Speed, D.1    Balding, D.J.2
  • 68
    • 79960990305 scopus 로고    scopus 로고
    • Variation in actual relationship as a consequence of Mendelian sampling and linkage
    • W.G. Hill, and B.S. Weir Variation in actual relationship as a consequence of Mendelian sampling and linkage Genet. Res. 93 2011 47 64
    • (2011) Genet. Res. , vol.93 , pp. 47-64
    • Hill, W.G.1    Weir, B.S.2
  • 69
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • B. Devlin, and K. Roeder Genomic control for association studies Biometrics 55 1999 997 1004
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 72
    • 84877306707 scopus 로고    scopus 로고
    • EXclusion: Toward integrating the X chromosome in genome-wide association analyses
    • A.L. Wise, L. Gyi, and T.A. Manolio eXclusion: toward integrating the X chromosome in genome-wide association analyses Am. J. Hum. Genet. 92 2013 643 647
    • (2013) Am. J. Hum. Genet. , vol.92 , pp. 643-647
    • Wise, A.L.1    Gyi, L.2    Manolio, T.A.3
  • 73
    • 0030753906 scopus 로고    scopus 로고
    • Modelling expectation and variance for genotype by environment data
    • J.B. Denis, H.P. Piepho, and F.A. Van Eeuwijk Modelling expectation and variance for genotype by environment data Heredity 79 1997 162 171
    • (1997) Heredity , vol.79 , pp. 162-171
    • Denis, J.B.1    Piepho, H.P.2    Van Eeuwijk, F.A.3
  • 74
    • 0034536309 scopus 로고    scopus 로고
    • A mixed-model approach to mapping quantitative trait loci in barley on the basis of multiple environment data
    • H.P. Piepho A mixed-model approach to mapping quantitative trait loci in barley on the basis of multiple environment data Genetics 156 2000 2043 2050
    • (2000) Genetics , vol.156 , pp. 2043-2050
    • Piepho, H.P.1
  • 75
    • 75649083856 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide association studies: No efficiency gain in using individual participant data
    • D.Y. Lin, and D. Zeng Meta-analysis of genome-wide association studies: no efficiency gain in using individual participant data Genet. Epidemiol. 34 2010 60 66
    • (2010) Genet. Epidemiol. , vol.34 , pp. 60-66
    • Lin, D.Y.1    Zeng, D.2
  • 76
    • 78651015947 scopus 로고
    • The comparison of percentages in matched samples
    • W.G. Cochran The comparison of percentages in matched samples Biometrika 37 1950 256 266
    • (1950) Biometrika , vol.37 , pp. 256-266
    • Cochran, W.G.1
  • 77
    • 79951997040 scopus 로고    scopus 로고
    • Adjustment for local ancestry in genetic association analysis of admixed populations
    • X. Wang, X. Zhu, H. Qin, R.S. Cooper, W.J. Ewens, C. Li, and M. Li Adjustment for local ancestry in genetic association analysis of admixed populations Bioinformatics 27 2011 670 677
    • (2011) Bioinformatics , vol.27 , pp. 670-677
    • Wang, X.1    Zhu, X.2    Qin, H.3    Cooper, R.S.4    Ewens, W.J.5    Li, C.6    Li, M.7
  • 78
    • 84873641956 scopus 로고    scopus 로고
    • Confounding and heterogeneity in genetic association studies with admixed populations
    • J. Liu, J.P. Lewinger, F.D. Gilliland, W.J. Gauderman, and D.V. Conti Confounding and heterogeneity in genetic association studies with admixed populations Am. J. Epidemiol. 177 2013 351 360
    • (2013) Am. J. Epidemiol. , vol.177 , pp. 351-360
    • Liu, J.1    Lewinger, J.P.2    Gilliland, F.D.3    Gauderman, W.J.4    Conti, D.V.5


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