메뉴 건너뛰기




Volumn 75, Issue 3, 2011, Pages 418-427

A Comparison of Association Methods Correcting for Population Stratification in Case-Control Studies

Author keywords

Association testing; Population structure; Power; Type I error

Indexed keywords

ARTICLE; CASE CONTROL STUDY; DISEASE MARKER; GENETIC ASSOCIATION; GENETIC SCREENING; INTERMETHOD COMPARISON; LOGISTIC REGRESSION ANALYSIS; POPULATION STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 79954585465     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1469-1809.2010.00639.x     Document Type: Article
Times cited : (68)

References (33)
  • 1
    • 0000937686 scopus 로고
    • Tests for linear trends in proportions and frequencies
    • Armitage, P. (1955) Tests for linear trends in proportions and frequencies. Biometrics 11, 375-386.
    • (1955) Biometrics , vol.11 , pp. 375-386
    • Armitage, P.1
  • 2
    • 77955166399 scopus 로고    scopus 로고
    • Population structure and cryptic relatedness in genetic association studies
    • Astle W. & Balding D. J. 2009 Population structure and cryptic relatedness in genetic association studies. Statistical Science 24, 451-471.
    • (2009) Statistical Science , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.J.2
  • 3
    • 0029199341 scopus 로고
    • A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity
    • Balding, D. & Nichols, R. (1995) A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. Genetica 96, 3-12.
    • (1995) Genetica , vol.96 , pp. 3-12
    • Balding, D.1    Nichols, R.2
  • 5
    • 1542330236 scopus 로고    scopus 로고
    • Qualitative semi-parametric test for genetic associations in case-control designs under structured populations
    • Chen, H. S., Zhu, X., Zhao, H. & Zhang, S. (2003) Qualitative semi-parametric test for genetic associations in case-control designs under structured populations. Ann Hum Genet 67, 250-264.
    • (2003) Ann Hum Genet , vol.67 , pp. 250-264
    • Chen, H.S.1    Zhu, X.2    Zhao, H.3    Zhang, S.4
  • 6
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B. & Roeder, K. (1999) Genomic control for association studies. Biometrics 55, 997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 7
    • 34247585477 scopus 로고    scopus 로고
    • A simple and improved correction for population stratification in case-control studies
    • Epstein, M. P., Allen, A. S. & Satten, G. A. (2007) A simple and improved correction for population stratification in case-control studies. Genet Epidemiol 80, 921-930.
    • (2007) Genet Epidemiol , vol.80 , pp. 921-930
    • Epstein, M.P.1    Allen, A.S.2    Satten, G.A.3
  • 10
    • 35348885443 scopus 로고    scopus 로고
    • A randomization test for controlling population stratification in whole-genome association studies
    • Kimmel, G., Jordan, M. I., Halperin, E., Shamir, R. & Karp, R. M. (2007) A randomization test for controlling population stratification in whole-genome association studies. Am J Hum Genet 81, 895-905.
    • (2007) Am J Hum Genet , vol.81 , pp. 895-905
    • Kimmel, G.1    Jordan, M.I.2    Halperin, E.3    Shamir, R.4    Karp, R.M.5
  • 11
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander, E. S. & Schork, N. J. (1994) Genetic dissection of complex traits. Science 265, 2037-2048.
    • (1994) Science , vol.265 , pp. 2037-2048
    • Lander, E.S.1    Schork, N.J.2
  • 12
    • 75649145930 scopus 로고    scopus 로고
    • Discovering genetic ancestry using spectral graph theory
    • Lee, A. B., Luca, D., Klei, L., Devlin, B. & Roeder, K. (2010) Discovering genetic ancestry using spectral graph theory. Genet Epidemiol 34, 51-59.
    • (2010) Genet Epidemiol , vol.34 , pp. 51-59
    • Lee, A.B.1    Luca, D.2    Klei, L.3    Devlin, B.4    Roeder, K.5
  • 13
    • 42149109325 scopus 로고    scopus 로고
    • Improved correction for population stratification in genome-wide association studies by identifying hidden population structures
    • Li, Q. & Yu, K. (2008) Improved correction for population stratification in genome-wide association studies by identifying hidden population structures. Genet Epidemiol 32, 215-226.
    • (2008) Genet Epidemiol , vol.32 , pp. 215-226
    • Li, Q.1    Yu, K.2
  • 15
    • 2442585696 scopus 로고    scopus 로고
    • The effects of human population structure on large genetic association studies
    • Marchini, J., Cardon, L. R., Phillips, M. S. & Donnelly, P. (2004) The effects of human population structure on large genetic association studies. Nat Genet 36, 512-517.
    • (2004) Nat Genet , vol.36 , pp. 512-517
    • Marchini, J.1    Cardon, L.R.2    Phillips, M.S.3    Donnelly, P.4
  • 17
    • 0018080152 scopus 로고
    • Synthetic maps of human gene frequencies in europeans
    • Menozzi, P., Piazza, A. & Cavalli-Sforza, L. (1978) Synthetic maps of human gene frequencies in europeans. Science 201, 786-792.
    • (1978) Science , vol.201 , pp. 786-792
    • Menozzi, P.1    Piazza, A.2    Cavalli-Sforza, L.3
  • 19
    • 42649093791 scopus 로고    scopus 로고
    • Interpreting principal component analyses of spatial population genetic variation
    • Novembre, J. & Stephens, M. (2008) Interpreting principal component analyses of spatial population genetic variation. Nat Genet 40, 646-649.
    • (2008) Nat Genet , vol.40 , pp. 646-649
    • Novembre, J.1    Stephens, M.2
  • 20
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • Patterson, N., Price, A. L. & Reich, D. (2006) Population structure and eigenanalysis. PLoS Genet 2, e190.
    • (2006) PLoS Genet , vol.2
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 21
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A. & Reich, D. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38, 904-909.
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 22
    • 77953811255 scopus 로고    scopus 로고
    • New approaches to population stratification in genome-wide association studies
    • Price, A. L., Zaitlen, N. A., Reich, D. & Patterson, N. (2010) New approaches to population stratification in genome-wide association studies. Nat Rev Genet 11, 459-463.
    • (2010) Nat Rev Genet , vol.11 , pp. 459-463
    • Price, A.L.1    Zaitlen, N.A.2    Reich, D.3    Patterson, N.4
  • 24
    • 67149093174 scopus 로고    scopus 로고
    • A kinship-based modification of the armitage trend test to address hidden population structure and small differential genotyping errors
    • Rakovski, C. S. & Stram, D. O. (2009) A kinship-based modification of the armitage trend test to address hidden population structure and small differential genotyping errors. PLoS ONE 4, e5825.
    • (2009) PLoS ONE , vol.4
    • Rakovski, C.S.1    Stram, D.O.2
  • 25
    • 42649088044 scopus 로고    scopus 로고
    • Principal component analysis of genetic data
    • Reich, D., Price, A. L. & Patterson, N. (2008) Principal component analysis of genetic data. Nat Genet 40, 491-492.
    • (2008) Nat Genet , vol.40 , pp. 491-492
    • Reich, D.1    Price, A.L.2    Patterson, N.3
  • 26
    • 0035121797 scopus 로고    scopus 로고
    • Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model
    • Satten, G. A., Flanders, W. D. & Yang, Q. (2001) Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model. Am J Hum Genet 68, 466-477.
    • (2001) Am J Hum Genet , vol.68 , pp. 466-477
    • Satten, G.A.1    Flanders, W.D.2    Yang, Q.3
  • 27
    • 76049108917 scopus 로고    scopus 로고
    • Roadtrips: Case-control association testing with partially or completely unknown population and pedigree structure
    • Thornton, T. & McPeek, M. S. (2010) Roadtrips: Case-control association testing with partially or completely unknown population and pedigree structure. Am J Hum Genet 86, 172-184.
    • (2010) Am J Hum Genet , vol.86 , pp. 172-184
    • Thornton, T.1    McPeek, M.S.2
  • 28
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright, S. (1951) The genetical structure of populations. Ann Eugenics 15, 323-354.
    • (1951) Ann Eugenics , vol.15 , pp. 323-354
    • Wright, S.1
  • 30
    • 77954005514 scopus 로고    scopus 로고
    • Laplacian eigenfunctions learn population structure
    • Zhang, J., Niyogi, P. & McPeek, M. S. (2009) Laplacian eigenfunctions learn population structure. PLoS ONE 4, e7928.
    • (2009) PLoS ONE , vol.4
    • Zhang, J.1    Niyogi, P.2    McPeek, M.S.3
  • 31
    • 0037228081 scopus 로고    scopus 로고
    • On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals
    • Zhang, S., Zhu, X. & Zhao, H. (2003) On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals. Genet Epidemiol 24, 44-56.
    • (2003) Genet Epidemiol , vol.24 , pp. 44-56
    • Zhang, S.1    Zhu, X.2    Zhao, H.3
  • 33
    • 0036668723 scopus 로고    scopus 로고
    • Association mapping, using a mixture model for complex traits
    • Zhu, X., Zhang, S., Zhao, H. & Cooper, R. S. (2002) Association mapping, using a mixture model for complex traits. Genet Epidemiol 23, 181-196.
    • (2002) Genet Epidemiol , vol.23 , pp. 181-196
    • Zhu, X.1    Zhang, S.2    Zhao, H.3    Cooper, R.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.