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Volumn 18, Issue 1, 2016, Pages 51-67

Analytical Validation and Application of a Targeted Next-Generation Sequencing Mutation-Detection Assay for Use in Treatment Assignment in the NCI-MPACT Trial

Author keywords

[No Author keywords available]

Indexed keywords

2 ALLYL 1 [6 (1 HYDROXY 1 METHYLETHYL) 2 PYRIDINYL] 6 [4 (4 METHYL 1 PIPERAZINYL)ANILINO] 1H PYRAZOLO[3,4 D]PYRIMIDIN 3(2H) ONE; CARBOPLATIN; DNA; EVEROLIMUS; NUCLEOTIDE; TEMOZOLOMIDE; TRAMETINIB; VELIPARIB;

EID: 84954055993     PISSN: 15251578     EISSN: 19437811     Source Type: Journal    
DOI: 10.1016/j.jmoldx.2015.07.006     Document Type: Article
Times cited : (38)

References (68)
  • 1
    • 79951865370 scopus 로고    scopus 로고
    • Clinical implications of the cancer genome
    • L.E. Macconaill, and L.A. Garraway Clinical implications of the cancer genome J Clin Oncol 28 2010 5219 5228
    • (2010) J Clin Oncol , vol.28 , pp. 5219-5228
    • Macconaill, L.E.1    Garraway, L.A.2
  • 3
    • 0037186924 scopus 로고    scopus 로고
    • Imatinib mesylate - A new oral targeted therapy
    • D.G. Savage, and K.H. Antman Imatinib mesylate - a new oral targeted therapy N Engl J Med 346 2002 683 693
    • (2002) N Engl J Med , vol.346 , pp. 683-693
    • Savage, D.G.1    Antman, K.H.2
  • 7
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • The Cancer Genome Atlas Network Comprehensive genomic characterization defines human glioblastoma genes and core pathways Nature 455 2008 1061 1068
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 8
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • The Cancer Genome Atlas Network Integrated genomic analyses of ovarian carcinoma Nature 474 2011 609 615
    • (2011) Nature , vol.474 , pp. 609-615
  • 9
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • The Cancer Genome Atlas Network Comprehensive genomic characterization of squamous cell lung cancers Nature 489 2012 519 525
    • (2012) Nature , vol.489 , pp. 519-525
  • 10
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • The Cancer Genome Atlas Network Comprehensive molecular portraits of human breast tumours Nature 490 2012 61 70
    • (2012) Nature , vol.490 , pp. 61-70
  • 14
    • 84858210814 scopus 로고    scopus 로고
    • Lessons learned from the investigational device exemption review of Children's Oncology Group trial AAML1031
    • S. Meshinchi, S.P. Hunger, R. Aplenc, P.C. Adamson, and J.M. Jessup Lessons learned from the investigational device exemption review of Children's Oncology Group trial AAML1031 Clin Cancer Res 18 2012 1547 1554
    • (2012) Clin Cancer Res , vol.18 , pp. 1547-1554
    • Meshinchi, S.1    Hunger, S.P.2    Aplenc, R.3    Adamson, P.C.4    Jessup, J.M.5
  • 16
    • 79956018943 scopus 로고    scopus 로고
    • Antitumor activities of JTP-74057 (GSK1120212), a novel MEK1/2 inhibitor, on colorectal cancer cell lines in vitro and in vivo
    • T. Yamaguchi, R. Kakefuda, N. Tajima, Y. Sowa, and T. Sakai Antitumor activities of JTP-74057 (GSK1120212), a novel MEK1/2 inhibitor, on colorectal cancer cell lines in vitro and in vivo Int J Oncol 39 2011 23 31
    • (2011) Int J Oncol , vol.39 , pp. 23-31
    • Yamaguchi, T.1    Kakefuda, R.2    Tajima, N.3    Sowa, Y.4    Sakai, T.5
  • 20
    • 78649237831 scopus 로고    scopus 로고
    • Abrogation of the G2 checkpoint by inhibition of Wee-1 kinase results in sensitization of p53-deficient tumor cells to DNA-damaging agents
    • S. Leijen, J.H. Beijnen, and J.H. Schellens Abrogation of the G2 checkpoint by inhibition of Wee-1 kinase results in sensitization of p53-deficient tumor cells to DNA-damaging agents Curr Clin Pharmacol 5 2010 186 191
    • (2010) Curr Clin Pharmacol , vol.5 , pp. 186-191
    • Leijen, S.1    Beijnen, J.H.2    Schellens, J.H.3
  • 26
    • 51749095471 scopus 로고    scopus 로고
    • FBXW7 targets mTOR for degradation and cooperates with PTEN in tumor suppression
    • J.H. Mao, I.J. Kim, D. Wu, J. Climent, H.C. Kang, R. DelRosario, and A. Balmain FBXW7 targets mTOR for degradation and cooperates with PTEN in tumor suppression Science 321 2008 1499 1502
    • (2008) Science , vol.321 , pp. 1499-1502
    • Mao, J.H.1    Kim, I.J.2    Wu, D.3    Climent, J.4    Kang, H.C.5    DelRosario, R.6    Balmain, A.7
  • 27
    • 0024376173 scopus 로고
    • Ras oncogenes in human cancer: A review
    • J.L. Bos ras oncogenes in human cancer: a review Cancer Res 49 1989 4682 4689
    • (1989) Cancer Res , vol.49 , pp. 4682-4689
    • Bos, J.L.1
  • 29
    • 0037805547 scopus 로고    scopus 로고
    • RAS oncogenes: The first 30 years
    • M. Malumbres, and M. Barbacid RAS oncogenes: the first 30 years Nat Rev Cancer 3 2003 459 465
    • (2003) Nat Rev Cancer , vol.3 , pp. 459-465
    • Malumbres, M.1    Barbacid, M.2
  • 33
    • 33847326819 scopus 로고    scopus 로고
    • Inactive full-length p53 mutants lacking dominant wild-type p53 inhibition highlight loss of heterozygosity as an important aspect of p53 status in human cancers
    • L.R. Dearth, H. Qian, T. Wang, T.E. Baroni, J. Zeng, S.W. Chen, S.Y. Yi, and R.K. Brachmann Inactive full-length p53 mutants lacking dominant wild-type p53 inhibition highlight loss of heterozygosity as an important aspect of p53 status in human cancers Carcinogenesis 28 2007 289 298
    • (2007) Carcinogenesis , vol.28 , pp. 289-298
    • Dearth, L.R.1    Qian, H.2    Wang, T.3    Baroni, T.E.4    Zeng, J.5    Chen, S.W.6    Yi, S.Y.7    Brachmann, R.K.8
  • 37
    • 0033965487 scopus 로고    scopus 로고
    • P53 mutants have selective dominant-negative effects on apoptosis but not growth arrest in human cancer cell lines
    • O.N. Aurelio, X.T. Kong, S. Gupta, and E.J. Stanbridge p53 mutants have selective dominant-negative effects on apoptosis but not growth arrest in human cancer cell lines Mol Cell Biol 20 2000 770 778
    • (2000) Mol Cell Biol , vol.20 , pp. 770-778
    • Aurelio, O.N.1    Kong, X.T.2    Gupta, S.3    Stanbridge, E.J.4
  • 38
    • 0035131701 scopus 로고    scopus 로고
    • A subset of tumor-derived mutant forms of p53 down-regulate p63 and p73 through a direct interaction with the p53 core domain
    • C. Gaiddon, M. Lokshin, J. Ahn, T. Zhang, and C. Prives A subset of tumor-derived mutant forms of p53 down-regulate p63 and p73 through a direct interaction with the p53 core domain Mol Cell Biol 21 2001 1874 1887
    • (2001) Mol Cell Biol , vol.21 , pp. 1874-1887
    • Gaiddon, C.1    Lokshin, M.2    Ahn, J.3    Zhang, T.4    Prives, C.5
  • 39
    • 0027203117 scopus 로고
    • Heterogeneity of transcriptional activity of mutant p53 proteins and p53 DNA target sequences
    • J.Y. Chen, W.D. Funk, W.E. Wright, J.W. Shay, and J.D. Minna Heterogeneity of transcriptional activity of mutant p53 proteins and p53 DNA target sequences Oncogene 8 1993 2159 2166
    • (1993) Oncogene , vol.8 , pp. 2159-2166
    • Chen, J.Y.1    Funk, W.D.2    Wright, W.E.3    Shay, J.W.4    Minna, J.D.5
  • 40
    • 0029911703 scopus 로고    scopus 로고
    • Dominant-negative p53 mutations selected in yeast hit cancer hot spots
    • R.K. Brachmann, M. Vidal, and J.D. Boeke Dominant-negative p53 mutations selected in yeast hit cancer hot spots Proc Natl Acad Sci U S A 93 1996 4091 4095
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 4091-4095
    • Brachmann, R.K.1    Vidal, M.2    Boeke, J.D.3
  • 42
    • 0029027667 scopus 로고
    • Effects of p53 mutants on wild-type p53-mediated transactivation are cell type dependent
    • K. Forrester, S.E. Lupold, V.L. Ott, C.H. Chay, V. Band, X.W. Wang, and C.C. Harris Effects of p53 mutants on wild-type p53-mediated transactivation are cell type dependent Oncogene 10 1995 2103 2111
    • (1995) Oncogene , vol.10 , pp. 2103-2111
    • Forrester, K.1    Lupold, S.E.2    Ott, V.L.3    Chay, C.H.4    Band, V.5    Wang, X.W.6    Harris, C.C.7
  • 44
    • 0035921778 scopus 로고    scopus 로고
    • A "no-hybrids" screen for functional antagonizers of human p53 transactivator function: Dominant negativity in fission yeast
    • S. Waddell, J.R. Jenkins, and T. Proikas-Cezanne A "no-hybrids" screen for functional antagonizers of human p53 transactivator function: dominant negativity in fission yeast Oncogene 20 2001 6001 6008
    • (2001) Oncogene , vol.20 , pp. 6001-6008
    • Waddell, S.1    Jenkins, J.R.2    Proikas-Cezanne, T.3
  • 45
    • 0032560027 scopus 로고    scopus 로고
    • P53 mutations isolated in yeast based on loss of transcription factor activity: Similarities and differences from p53 mutations detected in human tumors
    • C.B. Epstein, E.F. Attiyeh, D.A. Hobson, A.L. Silver, J.R. Broach, and A.J. Levine p53 mutations isolated in yeast based on loss of transcription factor activity: similarities and differences from p53 mutations detected in human tumors Oncogene 16 1998 2115 2122
    • (1998) Oncogene , vol.16 , pp. 2115-2122
    • Epstein, C.B.1    Attiyeh, E.F.2    Hobson, D.A.3    Silver, A.L.4    Broach, J.R.5    Levine, A.J.6
  • 46
    • 0028158620 scopus 로고
    • Activation of the human immunodeficiency virus type 1 long terminal repeat by transforming mutants of human p53
    • M.A. Subler, D.W. Martin, and S. Deb Activation of the human immunodeficiency virus type 1 long terminal repeat by transforming mutants of human p53 J Virol 68 1994 103 110
    • (1994) J Virol , vol.68 , pp. 103-110
    • Subler, M.A.1    Martin, D.W.2    Deb, S.3
  • 48
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
    • P. Cingolani, A. Platts, L. Wang le, M. Coon, T. Nguyen, L. Wang, S.J. Land, X. Lu, and D.M. Ruden A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3 Fly (Austin) 6 2012 80 92
    • (2012) Fly (Austin) , vol.6 , pp. 80-92
    • Cingolani, P.1    Platts, A.2    Wang le, L.3    Coon, M.4    Nguyen, T.5    Wang, L.6    Land, S.J.7    Lu, X.8    Ruden, D.M.9
  • 50
    • 84897387657 scopus 로고    scopus 로고
    • Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
    • J.M. Zook, B. Chapman, J. Wang, D. Mittelman, O. Hofmann, W. Hide, and M. Salit Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls Nat Biotechnol 32 2014 246 251
    • (2014) Nat Biotechnol , vol.32 , pp. 246-251
    • Zook, J.M.1    Chapman, B.2    Wang, J.3    Mittelman, D.4    Hofmann, O.5    Hide, W.6    Salit, M.7
  • 52
    • 0001072895 scopus 로고
    • The use of confidence or fiducial limits illustrated in the case of the binomial
    • C.J. Clopper, and E.S. Pearson The use of confidence or fiducial limits illustrated in the case of the binomial Biometrika 26 1934 404 413
    • (1934) Biometrika , vol.26 , pp. 404-413
    • Clopper, C.J.1    Pearson, E.S.2
  • 54
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • H. Thorvaldsdottir, J.T. Robinson, and J.P. Mesirov Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration Brief Bioinform 14 2013 178 192
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 55
    • 84904063663 scopus 로고    scopus 로고
    • A randomised, double-blind, placebo-controlled trial of trametinib, an oral MEK inhibitor, in combination with gemcitabine for patients with untreated metastatic adenocarcinoma of the pancreas
    • J.R. Infante, B.G. Somer, J.O. Park, C.P. Li, M.E. Scheulen, S.M. Kasubhai, D.Y. Oh, Y. Liu, S. Redhu, K. Steplewski, and N. Le A randomised, double-blind, placebo-controlled trial of trametinib, an oral MEK inhibitor, in combination with gemcitabine for patients with untreated metastatic adenocarcinoma of the pancreas Eur J Cancer 50 2014 2072 2081
    • (2014) Eur J Cancer , vol.50 , pp. 2072-2081
    • Infante, J.R.1    Somer, B.G.2    Park, J.O.3    Li, C.P.4    Scheulen, M.E.5    Kasubhai, S.M.6    Oh, D.Y.7    Liu, Y.8    Redhu, S.9    Steplewski, K.10    Le, N.11
  • 56
    • 84864346162 scopus 로고    scopus 로고
    • A phase II open-label randomized study to assess the efficacy and safety of selumetinib (AZD6244 [ARRY-142886]) versus capecitabine in patients with advanced or metastatic pancreatic cancer who have failed first-line gemcitabine therapy
    • G. Bodoky, C. Timcheva, D.R. Spigel, P.J. La Stella, T.E. Ciuleanu, G. Pover, and N.C. Tebbutt A phase II open-label randomized study to assess the efficacy and safety of selumetinib (AZD6244 [ARRY-142886]) versus capecitabine in patients with advanced or metastatic pancreatic cancer who have failed first-line gemcitabine therapy Invest New Drugs 30 2012 1216 1223
    • (2012) Invest New Drugs , vol.30 , pp. 1216-1223
    • Bodoky, G.1    Timcheva, C.2    Spigel, D.R.3    La Stella, P.J.4    Ciuleanu, T.E.5    Pover, G.6    Tebbutt, N.C.7
  • 60
    • 84886614002 scopus 로고
    • Computer-based consultations in clinical therapeutics: Explanation and rule acquisition capabilities of the MYCIN system
    • E.H. Shortliffe, R. Davis, S.G. Axline, B.G. Buchanan, C.C. Green, and S.N. Cohen Computer-based consultations in clinical therapeutics: explanation and rule acquisition capabilities of the MYCIN system Comput Biomed Res 8 1975 303 320
    • (1975) Comput Biomed Res , vol.8 , pp. 303-320
    • Shortliffe, E.H.1    Davis, R.2    Axline, S.G.3    Buchanan, B.G.4    Green, C.C.5    Cohen, S.N.6
  • 61
    • 0020001973 scopus 로고
    • Internist-1, an experimental computer-based diagnostic consultant for general internal medicine
    • R.A. Miller, H.E. Pople Jr., and J.D. Myers Internist-1, an experimental computer-based diagnostic consultant for general internal medicine N Engl J Med 307 1982 468 476
    • (1982) N Engl J Med , vol.307 , pp. 468-476
    • Miller, R.A.1    Pople, H.E.2    Myers, J.D.3
  • 62
    • 0037133249 scopus 로고    scopus 로고
    • Analysis of DNA microarrays using algorithms that employ rule-based expert knowledge
    • K.H. Pan, C.J. Lih, and S.N. Cohen Analysis of DNA microarrays using algorithms that employ rule-based expert knowledge Proc Natl Acad Sci U S A 99 2002 2118 2123
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 2118-2123
    • Pan, K.H.1    Lih, C.J.2    Cohen, S.N.3
  • 63
    • 21144455401 scopus 로고    scopus 로고
    • Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays
    • K.H. Pan, C.J. Lih, and S.N. Cohen Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays Proc Natl Acad Sci U S A 102 2005 8961 8965
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 8961-8965
    • Pan, K.H.1    Lih, C.J.2    Cohen, S.N.3
  • 67
    • 84876933570 scopus 로고    scopus 로고
    • Shining a light on dark sequencing: Characterising errors in Ion Torrent PGM data
    • L.M. Bragg, G. Stone, M.K. Butler, P. Hugenholtz, and G.W. Tyson Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data PLoS Comput Biol 9 2013 e1003031
    • (2013) PLoS Comput Biol , vol.9 , pp. e1003031
    • Bragg, L.M.1    Stone, G.2    Butler, M.K.3    Hugenholtz, P.4    Tyson, G.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.